Tasks
Actions
Resume
To resume this run, resubmit with same or fixed code. You can also change other parameters but that will affect caching behavior.
-resume c6d0384e-c312-43ea-8eaa-636a269a7756 -name small_easley
Error Report
Error executing process > 'BWAMEM2_MEM (1)'
Caused by:
No such variable: id -- Check script 'modules/local/bwamem2/main.nf' at line: 43
Source block:
def prefix = task.ext.prefix ?: "${meta.id}"
def ext = params.output_cram ? 'cram' : 'bam'
"""
touch ${prefix}.${ext}
cat <<-END_VERSIONS > versions.yml
"${task.process}":
bwamem2: 2.2.1
samtools: 1.21
END_VERSIONS
"""
Tip: you can try to figure out what's wrong by changing to the process work dir and showing the script file named `.command.sh`
Workflow
- Language / Cluster
- Nextflow / pltf-dev
- Session ID
- c6d0384e-c312-43ea-8eaa-636a269a7756
- Source
- /Users/abshah/src/daq/modules/local/bwamem2/run.nf
- Work Dir
- /Users/abshah/src/daq/work
- Output Dir
- /Users/abshah/src/daq/results/bwamem2_test
- Submitted By
- abshah
- Resumed
- No
Cost and Runtime
- Status
- failed
- Outputs
- computing…
- Started
- Jan 16, 2026 3:40 PM
- Completed
- Jan 16, 2026 3:40 PM
- Duration
- 0s
- Exit Status
- -