File Info

Filename
rna_s1221_S42.bam_stat.txt
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/sm_testing/small_test_SMR_v3_100b4b86_6/QC/rseqc/rna_s1221_S42.bam_stat.txt
Size
817 bytes
Workflow Run
small_test_SMR_v3_100b4b86_6
Published
Feb 25, 2026 5:38 PM

Content

View in new tab 
#==================================================
#All numbers are READ count
#==================================================

Total records:                          230372

QC failed:                              0
Optical/PCR duplicate:                  0
Non primary hits                        30972
Unmapped reads:                         804
mapq < mapq_cut (non-unique):           9646

mapq >= mapq_cut (unique):              188950
Read-1:                                 94533
Read-2:                                 94417
Reads map to '+':                       94472
Reads map to '-':                       94478
Non-splice reads:                       89285
Splice reads:                           99665
Reads mapped in proper pairs:           188512
Proper-paired reads map to different chrom:0