rna_s1221_S42_seqtool_mqc.tsv

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Filename: rna_s1221_S42_seqtool_mqc.tsv
Full Path: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/sm_testing/small_test_SMR_v3_100b4b86_6/QC/seqtool/rna_s1221_S42_seqtool_mqc.tsv
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Workflow Run: small_test_SMR_v3_100b4b86_6
Published: Feb 25, 2026 5:41 PM

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#id: 'seqtools_metrics'

#plot_type: 'generalstats'

#pconfig:

# reads:

# namespace: 'SeqTools'

# title: 'Reads'

# description: 'SeqTools Reads'

# format: '{:,.0f}'

# min: 0

# frac_unmapped:

# namespace: 'SeqTools'

# title: 'Frac Unmapped'

# description: 'SeqTools Frac Unmapped'

# format: '{:,.2f}'

# unique_reads:

# namespace: 'SeqTools'

# title: 'Unique Reads'

# description: 'SeqTools Unique Reads'

# format: '{:,.0f}'

# min: 0

# frac_dupes:

# namespace: 'SeqTools'

# title: 'Frac Dupes'

# description: 'SeqTools Frac Dupes'

# format: '{:,.2f}'

# frac_reads_on_target:

# namespace: 'SeqTools'

# title: 'Frac Reads On Target'

# description: 'SeqTools Frac Reads On Target'

# format: '{:,.0f}'

# min: 0

# frac_reads_off_target:

# namespace: 'SeqTools'

# title: 'Frac Reads Off Target'

# description: 'SeqTools Frac Reads Off Target'

# format: '{:,.0f}'

# min: 0

# n_q30:

# namespace: 'SeqTools'

# title: 'N Q30'

# description: 'SeqTools N Q30'

# format: '{:,.2f}'

# mean_depth:

# namespace: 'SeqTools'

# title: 'Mean Depth'

# description: 'SeqTools Mean Depth'

# format: '{:,.2f}'

# q50_depth:

# namespace: 'SeqTools'

# title: 'Q50 Depth'

# description: 'SeqTools Q50 Depth'

# format: '{:,.2f}'

# frac_bases_gt30x:

# namespace: 'SeqTools'

# title: 'Frac Bases Gt30X'

# description: 'SeqTools Frac Bases Gt30X'

# format: '{:,.0f}'

# min: 0

# frac_bases_gt100x:

# namespace: 'SeqTools'

# title: 'Frac Bases Gt100X'

# description: 'SeqTools Frac Bases Gt100X'

# format: '{:,.0f}'

# min: 0

# gc_bias:

# namespace: 'SeqTools'

# title: 'GC Bias'

# description: 'Ratio of high GC (63-100%) to low GC (0-43%) reads'

# format: '{:,.3f}'

# min: 0

# scale: 'RdYlGn'

Sample

reads

frac_unmapped

unique_reads

frac_dupes

frac_reads_on_target

frac_reads_off_target

n_q30

mean_depth

q50_depth

frac_bases_gt30x

frac_bases_gt100x

gc_bias

rna_s1221_S42

198648

0.004047

197698

0.004782

0.929013

0.06692

0.985339

0.40779

0.0

0.000548

1.4e-05

0.0

73 rows