rna_s1221_S42.arriba.fusions.discarded.tsv

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Filename: rna_s1221_S42.arriba.fusions.discarded.tsv
Full Path: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/sm_testing/small_test_SMR_v3_1bb6229e_test/arriba/rna_s1221_S42.arriba.fusions.discarded.tsv
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Workflow Run: small_test_SMR_v4_1bb6229e_test
Published: Feb 26, 2026 4:47 PM

Content

#gene1	gene2	strand1(gene/fusion)	strand2(gene/fusion)	breakpoint1	breakpoint2	site1	site2	type	split_reads1	split_reads2	discordant_mates	coverage1	coverage2	confidence	reading_frame	tags	retained_protein_domains	closest_genomic_breakpoint1	closest_genomic_breakpoint2	gene_id1	gene_id2	transcript_id1	transcript_id2	direction1	direction2	filters	fusion_transcript	peptide_sequence	read_identifiers
AF130417.1	NCOA3	-/-	+/+	21:18054915	20:47627597	intron	CDS	translocation	0	0	0	0	3	low	.	.	\|Domain_of_unknown_function_(DUF4927)(100%),Nuclear_receptor_coactivator(100%),Nuclear_receptor_coactivator__DUF1518(100%),PAS_domain(100%),Steroid_receptor_coactivator(100%),Unstructured_region_on_nuclear_receptor_coactivator_protein(100%)	.	.	ENSG00000227330	ENSG00000124151	.	.	upstream	upstream	homopolymer(1)	.	.	.
FAM180A	NCOA3	-/+	+/+	7:135742571	20:47627597	intron	CDS	translocation/3'-3'	0	0	0	0	3	low	.	.	\|Domain_of_unknown_function_(DUF4927)(100%),Nuclear_receptor_coactivator(100%),Nuclear_receptor_coactivator__DUF1518(100%),PAS_domain(100%),Steroid_receptor_coactivator(100%),Unstructured_region_on_nuclear_receptor_coactivator_protein(100%)	.	.	ENSG00000189320	ENSG00000124151	.	.	downstream	upstream	homopolymer(1)	.	.	.
NT5E	NCOA3	+/-	+/+	6:85457704	20:47627597	intron	CDS	translocation/3'-3'	0	0	0	0	3	low	.	.	\|Domain_of_unknown_function_(DUF4927)(100%),Nuclear_receptor_coactivator(100%),Nuclear_receptor_coactivator__DUF1518(100%),PAS_domain(100%),Steroid_receptor_coactivator(100%),Unstructured_region_on_nuclear_receptor_coactivator_protein(100%)	.	.	ENSG00000135318	ENSG00000124151	.	.	upstream	upstream	homopolymer(1)	.	.	.
LINC00486	CEP131	+/+	-/-	2:32916558	17:81198207	intron	CDS	translocation	0	0	0	489	1	low	.	.	.	.	.	ENSG00000230876	ENSG00000141577	.	.	downstream	downstream	inconsistently_clipped(1)	.	.	.
TCL1A	FP236383.3	-/-	+/+	14:95713944	21:8442541	intron	intron	translocation	0	0	0	7	10	low	.	.	TCL1/MTCP1_family(36%)\|	.	.	ENSG00000100721	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
TCL1A	5_8S_rRNA(2574),FP236383.3(121136)	-/-	./+	14:95713944	21:8259507	intron	intergenic	translocation	0	0	0	7	12	low	.	.	TCL1/MTCP1_family(36%)\|	.	.	ENSG00000100721	.	.	.	upstream	upstream	multimappers(1)	.	.	.
TCL1A	FP236383.3	-/-	+/+	14:95713944	21:8398312	intron	intron	translocation	0	0	0	7	12	low	.	.	TCL1/MTCP1_family(36%)\|	.	.	ENSG00000100721	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
TCL1A	FP671120.4	-/-	+/+	14:95713944	21:8215278	intron	intron	translocation	1	0	0	7	11	low	.	.	TCL1/MTCP1_family(36%)\|	.	.	ENSG00000100721	ENSG00000278996	.	.	upstream	upstream	min_support	.	.	.
CDC20	LINC00486	+/.	+/.	1:43361201	2:32916555	CDS	intron	translocation	0	0	0	3	489	low	.	.	.	.	.	ENSG00000117399	ENSG00000230876	.	.	upstream	downstream	low_entropy	.	.	.
HSP90B1	HSP90B1	+/+	+/+	12:103947420	12:103947355	CDS	CDS	duplication/ITD	0	0	0	22	21	low	.	.	Histidine_kinase-__DNA_gyrase_B-__and_HSP90-like_ATPase(100%),Hsp90_protein(100%)\|Hsp90_protein(0%)	.	.	ENSG00000166598	ENSG00000166598	.	.	downstream	upstream	duplicates(1),hairpin(1)	.	.	.
SLC25A6	IL3RA	-/-	+/-	X:1386682	X:1378812	CDS	intron	deletion/read-through/5'-5'	0	0	0	32	2	low	.	.	Mitochondrial_carrier_protein(91%)\|	.	.	ENSG00000169100	ENSG00000185291	.	.	upstream	downstream	read_through(1)	.	.	.
ATP13A1	ODC1-DT(76108),NOL10(36953)	-/-	./+	19:19645647	2:10533801	CDS/splice-site	intergenic	translocation	1	0	0	4	0	low	.	.	E1-E2_ATPase(100%),haloacid_dehalogenase-like_hydrolase(100%)\|	.	.	ENSG00000105726	.	.	.	upstream	upstream	min_support	.	.	.
C19orf53	MT-RNR2	+/+	+/+	19:13774677	MT:2563	CDS	exon	translocation	0	0	0	3	.	low	.	.	Protein_of_unknown_function_(DUF2462)(48%)\|	.	.	ENSG00000104979	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
FP671120.7	PFN1	-/+	-/-	21:8254871	17:4948429	exon	CDS	translocation/3'-3'	0	0	0	31	31	low	.	.	\|Profilin(100%)	.	.	ENSG00000281383	ENSG00000108518	.	.	downstream	downstream	multimappers(1)	.	.	.
LINC00486	EVI2B	+/.	-/.	2:32916555	17:31304915	intron	CDS	translocation	0	0	0	489	3	low	.	.	.	.	.	ENSG00000230876	ENSG00000185862	.	.	downstream	downstream	low_entropy	.	.	.
LINC00486	EVI2B	+/.	-/.	2:32916556	17:31304915	intron	CDS	translocation	0	0	0	489	3	low	.	.	.	.	.	ENSG00000230876	ENSG00000185862	.	.	downstream	downstream	low_entropy	.	.	.
ACTB	ACTB	-/-	-/-	7:5528708	7:5529202	CDS	CDS	duplication	0	0	0	0	132	low	.	.	Actin(32%)\|Actin(71%)	.	.	ENSG00000075624	ENSG00000075624	.	.	upstream	downstream	hairpin(1)	.	.	.
MKI67	FP671120.4	-/-	+/+	10:128108125	21:8216078	CDS	intron	translocation	1	0	0	9	55	low	.	.	FHA_domain(100%),KI67R_(NUC007)_repeat(12%),Protein_phosphatase_1_binding(100%)\|	.	.	ENSG00000148773	ENSG00000278996	.	.	upstream	upstream	min_support	.	.	.
MKI67	5_8S_rRNA(3374),FP236383.3(120336)	-/-	./+	10:128108125	21:8260307	CDS	intergenic	translocation	0	0	0	9	60	low	.	.	FHA_domain(100%),KI67R_(NUC007)_repeat(12%),Protein_phosphatase_1_binding(100%)\|	.	.	ENSG00000148773	.	.	.	upstream	upstream	multimappers(1)	.	.	.
MKI67	FP236383.3	-/-	+/+	10:128108125	21:8443347	CDS	intron	translocation	0	0	0	9	62	low	.	.	FHA_domain(100%),KI67R_(NUC007)_repeat(12%),Protein_phosphatase_1_binding(100%)\|	.	.	ENSG00000148773	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
POM121	POM121	+/+	+/+	7:72940993	7:72941837	CDS/splice-site	CDS/splice-site	deletion/read-through	0	0	0	5	7	low	.	.	POM121_family(100%)\|	.	.	ENSG00000196313	ENSG00000196313	.	.	downstream	upstream	read_through(1)	.	.	.
POM121B	POM121	+/+	+/+	7:73295901	7:72941837	exon/splice-site	CDS/splice-site	duplication	0	0	0	3	7	low	.	.	.	.	.	ENSG00000205578	ENSG00000196313	.	.	downstream	upstream	multimappers(1)	.	.	.
POM121B	POM121C	+/+	-/-	7:73295901	7:75423203	exon/splice-site	CDS/splice-site	inversion	0	0	0	3	6	low	.	.	.	.	.	ENSG00000205578	ENSG00000272391	.	.	downstream	downstream	multimappers(1)	.	.	.
POM121C	POM121C	-/-	-/-	7:75424049	7:75423203	CDS/splice-site	CDS/splice-site	deletion/read-through	0	0	0	2	6	low	.	.	POM121_family(100%)\|	.	.	ENSG00000272391	ENSG00000272391	.	.	upstream	downstream	read_through(1)	.	.	.
RRAGD	HLA-A	-/-	+/+	6:89412151	6:29942756	5'UTR	intron	inversion	0	0	0	0	39	low	.	.	\|Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(99%),Immunoglobulin_C1-set_domain(100%),MHC_I_C-terminus(100%)	.	.	ENSG00000025039	ENSG00000206503	.	.	upstream	upstream	mismatches(1)	.	.	.
CAMTA1	HLA-A	+/-	+/+	1:7301710	6:29942756	intron	intron	translocation/3'-3'	0	0	0	0	39	low	.	.	\|Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(99%),Immunoglobulin_C1-set_domain(100%),MHC_I_C-terminus(100%)	.	.	ENSG00000171735	ENSG00000206503	.	.	upstream	upstream	mismatches(1)	.	.	.
FLNA	HLA-A	-/+	+/+	X:154374393	6:29942756	intron	intron	translocation/3'-3'	0	0	0	0	39	low	.	.	\|Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(99%),Immunoglobulin_C1-set_domain(100%),MHC_I_C-terminus(100%)	.	.	ENSG00000196924	ENSG00000206503	.	.	downstream	upstream	mismatches(1)	.	.	.
PCDHB5	HLA-A	+/-	+/+	5:141136092	6:29942757	CDS	CDS/splice-site	translocation/3'-3'	0	0	0	0	39	low	.	.	\|Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(99%),Immunoglobulin_C1-set_domain(100%),MHC_I_C-terminus(100%)	.	.	ENSG00000113209	ENSG00000206503	.	.	upstream	upstream	mismatches(1)	.	.	.
ASIC2	HSPH1	-/+	-/-	17:33318958	13:31145706	intron	CDS	translocation/3'-3'	0	0	0	0	2	low	.	.	\|Hsp70_protein(31%)	.	.	ENSG00000108684	ENSG00000120694	.	.	downstream	downstream	mismatches(1)	.	.	.
FP671120.6	WNK1	-/+	+/+	21:8210819	12:753796	exon	CDS	translocation/3'-3'	1	0	0	11	0	low	.	.	\|Oxidative-stress-responsive_kinase_1_C-terminal_domain(100%),Protein_kinase_domain(100%)	.	.	ENSG00000280800	ENSG00000060237	.	.	downstream	upstream	min_support	.	.	.
FP236383.5	WNK1	-/+	+/+	21:8438064	12:753796	exon	CDS	translocation/3'-3'	0	0	0	13	0	low	.	.	\|Oxidative-stress-responsive_kinase_1_C-terminal_domain(100%),Protein_kinase_domain(100%)	.	.	ENSG00000281181	ENSG00000060237	.	.	downstream	upstream	multimappers(1)	.	.	.
FP236383.3	FP671120.4	+/+	+/+	21:8442012	21:8214752	intron	intron	duplication	1	0	0	567	169	low	.	.	.	.	.	ENSG00000280441	ENSG00000278996	.	.	downstream	upstream	merge_adjacent	.	.	.
ACLY	ACLY	-/-	-/-	17:41892300	17:41892290	CDS	CDS	deletion/read-through	0	0	0	4	3	low	.	.	ATP_citrate_lyase_citrate-binding(100%),CoA_binding_domain(83%)\|Citrate_synthase__C-terminal_domain(100%),CoA-ligase(100%),CoA_binding_domain(13%)	.	.	ENSG00000131473	ENSG00000131473	.	.	upstream	downstream	read_through(1)	.	.	.
PHRF1	PHRF1	+/+	+/+	11:587391	11:581587	CDS	CDS	duplication	0	1	0	0	0	low	.	.	Ring_finger_domain(22%)\|PHD-finger(100%),Ring_finger_domain(100%)	.	.	ENSG00000070047	ENSG00000070047	.	.	downstream	upstream	intragenic_exonic	.	.	.
AC143336.1(94686),AC025774.1(236795)	SP110	./-	-/-	5:71850987	2:230202655	intergenic	CDS	translocation	0	1	0	0	6	low	.	.	\|SAND_domain(100%)	.	.	.	ENSG00000135899	.	.	upstream	downstream	min_support	.	.	.
5_8S_rRNA(3814),FP236383.3(119896)	SP110	./-	-/-	21:8260747	2:230202655	intergenic	CDS	translocation	0	0	0	6	6	low	.	.	\|SAND_domain(100%)	.	.	.	ENSG00000135899	.	.	upstream	downstream	multimappers(1)	.	.	.
FP236383.3	SP110	+/-	-/-	21:8443787	2:230202655	intron	CDS	translocation/3'-3'	0	0	0	5	6	low	.	.	\|SAND_domain(100%)	.	.	ENSG00000280441	ENSG00000135899	.	.	upstream	downstream	multimappers(1)	.	.	.
FP236383.3	SP110	+/-	-/-	21:8399552	2:230202655	intron	CDS	translocation/3'-3'	0	0	0	7	6	low	.	.	\|SAND_domain(100%)	.	.	ENSG00000280441	ENSG00000135899	.	.	upstream	downstream	multimappers(1)	.	.	.
FP671120.4	SP110	+/-	-/-	21:8216518	2:230202655	intron	CDS	translocation/3'-3'	0	0	0	6	6	low	.	.	\|SAND_domain(100%)	.	.	ENSG00000278996	ENSG00000135899	.	.	upstream	downstream	multimappers(1)	.	.	.
FP236383.3	HOXB3	+/+	-/-	21:8444655	17:48550657	intron	CDS	translocation	1	0	0	59	0	low	.	.	\|Domain_of_unknown_function_(DUF4074)(100%)	.	.	ENSG00000280441	ENSG00000120093	.	.	downstream	downstream	min_support	.	.	.
LINC00486	ANAPC4	+/.	+/.	2:32916555	4:25418160	intron	CDS	translocation	0	0	0	489	3	low	.	.	.	.	.	ENSG00000230876	ENSG00000053900	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	ANAPC4	+/.	+/.	2:32916556	4:25418160	intron	CDS	translocation	0	0	0	489	3	low	.	.	.	.	.	ENSG00000230876	ENSG00000053900	.	.	downstream	upstream	low_entropy	.	.	.
ADNP	ADNP	-/-	-/-	20:50892266	20:50892566	CDS	CDS	duplication	0	1	0	0	1	low	.	.	Homeodomain(100%)\|Homeodomain(100%)	.	.	ENSG00000101126	ENSG00000101126	.	.	upstream	downstream	intragenic_exonic	.	.	.
LINC00486	SLC25A3	+/.	+/.	2:32916554	12:98594118	intron	CDS	translocation	0	0	0	489	10	low	.	.	.	.	.	ENSG00000230876	ENSG00000075415	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	SLC25A3	+/.	+/.	2:32916555	12:98594118	intron	CDS	translocation	0	0	0	489	10	low	.	.	.	.	.	ENSG00000230876	ENSG00000075415	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	SLC25A3	+/.	+/.	2:32916561	12:98594118	intron	CDS	translocation	0	0	0	480	10	low	.	.	.	.	.	ENSG00000230876	ENSG00000075415	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	SLC25A3	+/.	+/.	2:32916563	12:98594118	intron	CDS	translocation	0	0	0	480	10	low	.	.	.	.	.	ENSG00000230876	ENSG00000075415	.	.	downstream	upstream	mismatches	.	.	.
FAXC	GOLGA4	-/+	+/+	6:99318306	3:37314683	intron	intron	translocation/3'-3'	1	0	0	1	0	low	.	.	\|GRIP_domain(100%)	.	.	ENSG00000146267	ENSG00000144674	.	.	downstream	upstream	min_support	.	.	.
RPL14P1	RPL14P1	+/+	+/+	12:62965801	12:62965787	exon	exon	duplication/ITD	0	0	0	20	16	low	.	.	.	.	.	ENSG00000139239	ENSG00000139239	.	.	downstream	upstream	hairpin(1)	.	.	.
HCFC1	HCFC1	-/-	-/-	X:153950306	X:153950341	CDS	CDS	duplication/ITD	0	0	0	5	5	low	.	.	Galactose_oxidase__central_domain(100%),Kelch_motif(100%)\|	.	.	ENSG00000172534	ENSG00000172534	.	.	upstream	downstream	duplicates(1),hairpin(1)	.	.	.
IGLC2	IGLC3	+/+	+/+	22:22901164	22:22906527	CDS	CDS	deletion/read-through	0	0	0	7	163	low	.	.	.	.	.	ENSG00000211677	ENSG00000211679	.	.	downstream	upstream	read_through	.	.	.
H1-4	H1-4	+/+	+/+	6:26157018	6:26156827	CDS	CDS	duplication	1	0	0	15	30	low	.	.	linker_histone_H1_and_H5_family(100%)\|	.	.	ENSG00000168298	ENSG00000168298	.	.	downstream	upstream	intragenic_exonic	.	.	.
LINC00486	AKAP11	+/.	+/.	2:32916555	13:42303348	intron	CDS	translocation	0	0	0	489	6	low	.	.	.	.	.	ENSG00000230876	ENSG00000023516	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	AKAP11	+/.	+/.	2:32916556	13:42303348	intron	CDS	translocation	0	0	0	489	6	low	.	.	.	.	.	ENSG00000230876	ENSG00000023516	.	.	downstream	upstream	low_entropy	.	.	.
TRIB1	FP236383.3	+/+	+/+	8:125436054	21:8393065	CDS	intron	translocation	0	0	0	4	16	low	.	.	Protein_kinase_domain(48%)\|	.	.	ENSG00000173334	ENSG00000280441	.	.	downstream	upstream	multimappers(1)	.	.	.
TRIB1	CR392039.1(1141),CR392039.3(7925)	+/+	./+	8:125436054	21:8988571	CDS	intergenic	translocation	0	0	0	4	8	low	.	.	Protein_kinase_domain(48%)\|	.	.	ENSG00000173334	.	.	.	downstream	upstream	multimappers(1)	.	.	.
CNOT10	CNOT10	+/+	+/+	3:32764799	3:32764704	CDS	CDS	duplication/ITD	0	0	0	2	3	low	.	.	.	.	.	ENSG00000182973	ENSG00000182973	.	.	downstream	upstream	hairpin(1)	.	.	.
TRAM2	RPS27A	-/-	+/+	6:52555238	2:55235479	intron	CDS	translocation	0	0	0	0	64	low	.	.	\|Ribosomal_protein_S27a(50%)	.	.	ENSG00000065308	ENSG00000143947	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
LINC00486	EIF6	+/.	-/.	2:32916555	20:35279685	intron	CDS	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000242372	.	.	downstream	downstream	low_entropy	.	.	.
FP671120.7	DKC1	-/+	+/+	21:8254980	X:154766950	exon	intron	translocation/3'-3'	0	0	0	15	4	low	.	.	\|PUA_domain(100%),TruB_family_pseudouridylate_synthase_(N_terminal_domain)(65%),tRNA_pseudouridylate_synthase_B_C-terminal_domain(100%)	.	.	ENSG00000281383	ENSG00000130826	.	.	downstream	upstream	multimappers(1)	.	.	.
FP671120.6	DKC1	-/+	+/+	21:8210772	X:154766950	exon	intron	translocation/3'-3'	0	1	0	14	4	low	.	.	\|PUA_domain(100%),TruB_family_pseudouridylate_synthase_(N_terminal_domain)(65%),tRNA_pseudouridylate_synthase_B_C-terminal_domain(100%)	.	.	ENSG00000280800	ENSG00000130826	.	.	downstream	upstream	min_support	.	.	.
TLR10	TLR10	-/-	-/-	4:38772567	4:38774046	3'UTR	CDS	duplication	0	0	0	0	1	low	.	.	Leucine_Rich_Repeat(100%),Leucine_rich_repeat(100%),TIR_domain(100%)\|TIR_domain(100%)	.	.	ENSG00000174123	ENSG00000174123	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	5_8S_rRNA(2017),FP236383.3(121693)	+/.	./.	2:32916555	21:8258950	intron	intergenic	translocation	0	0	0	489	511	low	.	.	.	.	.	ENSG00000230876	.	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916555	21:8441985	intron	intron	translocation	0	0	0	489	563	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	MDN1	+/.	-/.	2:32916551	6:89772648	intron	CDS	translocation	0	0	0	489	9	low	.	.	.	.	.	ENSG00000230876	ENSG00000112159	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	MDN1	+/.	-/.	2:32916552	6:89772648	intron	CDS	translocation	0	0	0	489	9	low	.	.	.	.	.	ENSG00000230876	ENSG00000112159	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	MDN1	+/.	-/.	2:32916554	6:89772648	intron	CDS	translocation	0	0	0	489	9	low	.	.	.	.	.	ENSG00000230876	ENSG00000112159	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	MDN1	+/.	-/.	2:32916559	6:89772648	intron	CDS	translocation	0	0	0	489	9	low	.	.	.	.	.	ENSG00000230876	ENSG00000112159	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	MDN1	+/.	-/.	2:32916557	6:89772648	intron	CDS	translocation	0	0	0	489	9	low	.	.	.	.	.	ENSG00000230876	ENSG00000112159	.	.	downstream	downstream	mismatches	.	.	.
RPL4	RPL4	-/-	-/-	15:66499416	15:66499505	CDS	CDS	duplication/ITD	0	0	0	5	22	low	.	.	60S_ribosomal_protein_L4_C-terminal_domain(100%),Ribosomal_protein_L4/L1_family(100%)\|	.	.	ENSG00000174444	ENSG00000174444	.	.	upstream	downstream	hairpin(1),inconsistently_clipped(1)	.	.	.
LINC00486	CANX	+/+	+/+	2:32916548	5:179705762	intron	CDS	translocation	0	0	0	489	1	low	.	.	\|Calreticulin_family(100%)	.	.	ENSG00000230876	ENSG00000127022	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
LINC00486	CANX	+/+	+/+	2:32916549	5:179705762	intron	CDS	translocation	0	0	0	489	1	low	.	.	\|Calreticulin_family(100%)	.	.	ENSG00000230876	ENSG00000127022	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
LINC00486	PAICS	+/.	+/.	2:32916556	4:56459372	intron	CDS	translocation	0	0	0	489	9	low	.	.	.	.	.	ENSG00000230876	ENSG00000128050	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	CANX	+/+	+/+	2:32916550	5:179705762	intron	CDS	translocation	0	0	0	489	1	low	.	.	\|Calreticulin_family(100%)	.	.	ENSG00000230876	ENSG00000127022	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
LINC00486	PAICS	+/.	+/.	2:32916555	4:56459372	intron	CDS	translocation	0	0	0	489	9	low	.	.	.	.	.	ENSG00000230876	ENSG00000128050	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	CANX	+/+	+/+	2:32916551	5:179705762	intron	CDS	translocation	0	0	0	489	1	low	.	.	\|Calreticulin_family(100%)	.	.	ENSG00000230876	ENSG00000127022	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
LINC00486	CANX	+/+	+/+	2:32916553	5:179705762	intron	CDS	translocation	0	0	0	489	1	low	.	.	\|Calreticulin_family(100%)	.	.	ENSG00000230876	ENSG00000127022	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
LINC00486	CANX	+/+	+/+	2:32916554	5:179705762	intron	CDS	translocation	0	0	0	489	1	low	.	.	\|Calreticulin_family(100%)	.	.	ENSG00000230876	ENSG00000127022	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
LINC00486	CANX	+/+	+/+	2:32916555	5:179705762	intron	CDS	translocation	0	0	0	489	1	low	.	.	\|Calreticulin_family(100%)	.	.	ENSG00000230876	ENSG00000127022	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
LINC00486	CANX	+/+	+/+	2:32916545	5:179705762	intron	CDS	translocation	0	0	0	489	1	low	.	.	\|Calreticulin_family(100%)	.	.	ENSG00000230876	ENSG00000127022	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
LINC00486	CANX	+/+	+/+	2:32916547	5:179705762	intron	CDS	translocation	0	0	0	489	1	low	.	.	\|Calreticulin_family(100%)	.	.	ENSG00000230876	ENSG00000127022	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
LINC00486	PAICS	+/.	+/.	2:32916554	4:56459372	intron	CDS	translocation	0	0	0	489	9	low	.	.	.	.	.	ENSG00000230876	ENSG00000128050	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	CANX	+/+	+/+	2:32916552	5:179705762	intron	CDS	translocation	0	0	0	489	1	low	.	.	\|Calreticulin_family(100%)	.	.	ENSG00000230876	ENSG00000127022	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
HLA-C	HLA-G	-/-	+/+	6:31271073	6:29829418	CDS/splice-site	CDS/splice-site	inversion	1	0	0	74	0	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%)\|Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(0%),Immunoglobulin_C1-set_domain(100%)	.	.	ENSG00000204525	ENSG00000204632	.	.	upstream	upstream	min_support	.	.	.
POLA1	RNF213	+/-	+/+	X:24951338	17:80306399	intron	CDS	translocation/3'-3'	0	0	0	0	2	low	.	.	\|Zinc_finger__C3HC4_type_(RING_finger)(100%)	.	.	ENSG00000101868	ENSG00000173821	.	.	upstream	upstream	mismatches(1)	.	.	.
RMC1	AC135178.3	+/+	-/-	18:23503611	17:8382314	5'UTR	5'UTR/splice-site	translocation	0	1	0	0	28	low	.	.	.	.	.	ENSG00000141452	ENSG00000263809	.	.	downstream	downstream	min_support	.	.	.
IGF2BP3	IGF2BP3	-/-	-/-	7:23342064	7:23405110	CDS/splice-site	exon/splice-site	duplication/non-canonical_splicing	1	0	0	3	0	low	.	.	KH_domain(50%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)\|KH_domain(100%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(41%)	.	.	ENSG00000136231	ENSG00000136231	.	.	upstream	downstream	min_support	.	.	.
FP236383.3	ZNF383	+/+	+/+	21:8443031	19:37242490	intron	CDS	translocation	0	0	0	19	4	low	.	.	\|Zinc-finger_double_domain(100%),Zinc_finger__C2H2_type(100%)	.	.	ENSG00000280441	ENSG00000188283	.	.	downstream	upstream	multimappers(1)	.	.	.
FP671120.4	ZNF383	+/+	+/+	21:8215768	19:37242490	intron	CDS	translocation	0	1	0	21	4	low	.	.	\|Zinc-finger_double_domain(100%),Zinc_finger__C2H2_type(100%)	.	.	ENSG00000278996	ENSG00000188283	.	.	downstream	upstream	min_support	.	.	.
NUP62	LAPTM5	-/-	-/-	19:49908719	1:30739839	CDS	CDS	translocation	0	1	0	1	56	low	.	.	Nsp1-like_C-terminal_region(39%)\|Golgi_4-transmembrane_spanning_transporter(60%)	.	.	ENSG00000213024	ENSG00000162511	.	.	upstream	downstream	min_support	.	.	.
RIC1	PPP2R2D	+/-	+/+	9:5684270	10:131901022	intron	5'UTR	translocation/3'-3'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000107036	ENSG00000175470	.	.	upstream	upstream	homopolymer(1)	.	.	.
SETD3	PPP2R2D	-/+	+/+	14:99420985	10:131901026	intron	5'UTR	translocation/3'-3'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000183576	ENSG00000175470	.	.	downstream	upstream	mismatches(1)	.	.	.
RBM5	RBM5	+/+	+/+	3:50093820	3:50093724	CDS	CDS	duplication/ITD	0	0	0	2	3	low	.	.	\|G-patch_domain(100%),OCRE_domain(100%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%),Zn-finger_in_Ran_binding_protein_and_others(100%)	.	.	ENSG00000003756	ENSG00000003756	.	.	downstream	upstream	duplicates(1),hairpin(1)	.	.	.
RBM5	RBM6	+/+	+/+	3:50093820	3:50093724	CDS	3'UTR	duplication	0	0	0	2	3	low	.	.	.	.	.	ENSG00000003756	ENSG00000004534	.	.	downstream	upstream	duplicates(1),hairpin(1)	.	.	.
SEPTIN8	SEPTIN8	-/-	-/-	5:132760917	5:132761260	CDS	CDS	duplication	1	0	0	1	1	low	.	.	Septin(100%)\|	.	.	ENSG00000164402	ENSG00000164402	.	.	upstream	downstream	min_support	.	.	.
FP671120.4	BRPF1	+/+	+/+	21:8215275	3:9743046	intron	CDS	translocation	0	1	0	8	5	low	.	.	\|Bromodomain(26%),PWWP_domain(100%)	.	.	ENSG00000278996	ENSG00000156983	.	.	downstream	upstream	min_support	.	.	.
5_8S_rRNA(2571),FP236383.3(121139)	BRPF1	./+	+/+	21:8259504	3:9743046	intergenic	CDS	translocation	0	0	0	9	5	low	.	.	\|Bromodomain(26%),PWWP_domain(100%)	.	.	.	ENSG00000156983	.	.	downstream	upstream	multimappers(1)	.	.	.
SOS2	FP236383.3	-/-	+/-	14:50150036	21:8444302	CDS	intron	translocation/5'-5'	0	0	0	2	7	low	.	.	Core_histone_H2A/H2B/H3/H4(100%),PH_domain(100%),RasGEF_N-terminal_motif(100%),RasGEF_domain(2%),RhoGEF_domain(100%)\|	.	.	ENSG00000100485	ENSG00000280441	.	.	upstream	downstream	multimappers(1)	.	.	.
SOS2	FP236383.3	-/-	+/-	14:50150036	21:8400067	CDS	intron	translocation/5'-5'	1	0	0	2	7	low	.	.	Core_histone_H2A/H2B/H3/H4(100%),PH_domain(100%),RasGEF_N-terminal_motif(100%),RasGEF_domain(2%),RhoGEF_domain(100%)\|	.	.	ENSG00000100485	ENSG00000280441	.	.	upstream	downstream	min_support	.	.	.
EIF3CL	EIF3C	-/-	+/+	16:28392114	16:28715399	CDS	CDS	inversion	0	0	0	8	8	low	.	.	Eukaryotic_translation_initiation_factor_3_subunit_8_N-terminus(35%)\|Eukaryotic_translation_initiation_factor_3_subunit_8_N-terminus(67%),PCI_domain(100%)	.	.	ENSG00000205609	ENSG00000184110	.	.	upstream	upstream	mismatches(1)	.	.	.
HLA-H	HLA-B	+/+	-/-	6:29888225	6:31356441	intron	CDS/splice-site	inversion	0	0	0	0	8	low	.	.	\|Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(49%),Immunoglobulin_C1-set_domain(100%),MHC_I_C-terminus(100%)	.	.	ENSG00000206341	ENSG00000234745	.	.	downstream	downstream	mismatches(1)	.	.	.
HLA-H	HLA-B	+/+	-/-	6:29888224	6:31356442	exon/splice-site	CDS/splice-site	inversion	0	0	0	0	8	low	.	.	\|Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(49%),Immunoglobulin_C1-set_domain(100%),MHC_I_C-terminus(100%)	.	.	ENSG00000206341	ENSG00000234745	.	.	downstream	downstream	mismatches(1)	.	.	.
PRDX5	PRDX5	+/+	+/+	11:64321733	11:64321655	3'UTR	CDS	duplication/ITD	0	0	0	3	5	low	.	.	Redoxin(100%)\|	.	.	ENSG00000126432	ENSG00000126432	.	.	downstream	upstream	duplicates(1),hairpin(1)	.	.	.
AF212831.1(123405),NEK4P1(213373)	VIM	./-	+/+	21:16997096	10:17234696	intergenic	CDS	translocation	0	0	0	0	22	low	.	.	\|Intermediate_filament_protein(37%)	.	.	.	ENSG00000026025	.	.	upstream	upstream	mismatches(1)	.	.	.
HUWE1	VIM	-/+	+/+	X:53649804	10:17234696	intron	CDS	translocation/3'-3'	0	0	0	0	22	low	.	.	\|Intermediate_filament_protein(37%)	.	.	ENSG00000086758	ENSG00000026025	.	.	downstream	upstream	mismatches(1)	.	.	.
GPC6	VIM	+/-	+/+	13:94066229	10:17234696	intron	CDS	translocation/3'-3'	0	0	0	0	22	low	.	.	\|Intermediate_filament_protein(37%)	.	.	ENSG00000183098	ENSG00000026025	.	.	upstream	upstream	mismatches(1)	.	.	.
ARFGEF2	ARFGEF2	+/+	+/+	20:48952866	20:48952798	CDS	CDS	duplication/ITD	0	0	0	2	2	low	.	.	Dimerisation_and_cyclophilin-binding_domain_of_Mon2(98%)\|Dimerisation_and_cyclophilin-binding_domain_of_Mon2(14%),Domain_of_unknown_function_(DUF1981)(100%),Guanine_nucleotide_exchange_factor_in_Golgi_transport_N-terminal(100%),Sec7_domain(100%)	.	.	ENSG00000124198	ENSG00000124198	.	.	downstream	upstream	duplicates(1),hairpin(1)	.	.	.
LINC00486	PDXDC1	+/.	+/.	2:32916550	16:15032943	intron	CDS	translocation	0	0	0	489	1	low	.	.	.	.	.	ENSG00000230876	ENSG00000179889	.	.	downstream	upstream	low_entropy	.	.	.
FAM117A	NFATC2	-/+	-/-	17:49729251	20:51524110	intron	CDS/splice-site	translocation/3'-3'	0	0	0	0	3	low	.	.	\|Rel_homology_DNA-binding_domain(100%),Rel_homology_dimerisation_domain(100%)	.	.	ENSG00000121104	ENSG00000101096	.	.	downstream	downstream	mismatches(1)	.	.	.
AC079772.1	NFATC2	+/+	-/-	4:33543994	20:51524110	intron	CDS/splice-site	translocation	0	0	0	0	3	low	.	.	\|Rel_homology_DNA-binding_domain(100%),Rel_homology_dimerisation_domain(100%)	.	.	ENSG00000288321	ENSG00000101096	.	.	downstream	downstream	mismatches(1)	.	.	.
FP236383.3	FP236383.3	+/+	+/+	21:8444649	21:8444630	intron	intron	duplication/ITD	0	0	0	59	27	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	downstream	upstream	low_entropy(1),merge_adjacent	.	.	.
KCNC4	DNAH14	+/+	+/-	1:110210465	1:225360884	5'UTR	CDS	inversion/3'-3'	0	1	0	0	1	low	.	.	.	.	.	ENSG00000116396	ENSG00000185842	.	.	downstream	downstream	min_support	.	.	.
SFPQ	CKAP5	-/-	-/-	1:35182191	11:46795682	intron	CDS	translocation	0	1	0	0	4	low	.	.	NOPS_(NUC059)_domain(100%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)\|CLASP_N_terminal(64%)	.	.	ENSG00000116560	ENSG00000175216	.	.	upstream	downstream	min_support	.	.	.
PLEKHM3	PLEKHM3	-/-	-/-	2:207976651	2:207977586	CDS/splice-site	CDS/splice-site	duplication/non-canonical_splicing	1	0	0	1	0	low	.	.	PH_domain(100%)\|PH_domain(100%),Putative_zinc-RING_and/or_ribbon(100%)	.	.	ENSG00000178385	ENSG00000178385	.	.	upstream	downstream	min_support	.	.	.
NEMP1	NIT2	-/-	+/+	12:57086521	3:100354815	intron	CDS	translocation	0	0	0	0	0	low	.	.	\|Carbon-nitrogen_hydrolase(5%)	.	.	ENSG00000166881	ENSG00000114021	.	.	upstream	upstream	mismatches(1)	.	.	.
FNDC3A	FNDC3A	+/+	+/+	13:49012840	13:49012807	intron	intron	duplication/ITD	0	0	0	1	1	low	.	.	\|Fibronectin_type_III_domain(100%)	.	.	ENSG00000102531	ENSG00000102531	.	.	downstream	upstream	low_entropy(1)	.	.	.
LINC01060	DLGAP5	+/+	-/-	4:188543913	14:55183753	intron	CDS/splice-site	translocation	0	1	0	0	2	low	.	.	\|Guanylate-kinase-associated_protein_(GKAP)_protein(100%)	.	.	ENSG00000249378	ENSG00000126787	.	.	downstream	downstream	min_support	.	.	.
DPP3	DPP3	+/+	+/+	11:66487336	11:66482283	CDS	CDS	duplication	0	1	0	2	2	low	.	.	Peptidase_family_M49(8%)\|Peptidase_family_M49(100%)	.	.	ENSG00000254986	ENSG00000254986	.	.	downstream	upstream	intragenic_exonic	.	.	.
THRAP3	FP236383.5	+/+	-/+	1:36301589	21:8437848	CDS	exon	translocation/5'-5'	0	0	0	4	29	low	.	.	THRAP3/BCLAF1_family(100%)\|	.	.	ENSG00000054118	ENSG00000281181	.	.	downstream	upstream	multimappers(1)	.	.	.
LINC00486	NOC4L	+/.	+/.	2:32916555	12:132151274	intron	CDS	translocation	0	0	0	489	3	low	.	.	.	.	.	ENSG00000230876	ENSG00000184967	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	NOC4L	+/.	+/.	2:32916556	12:132151274	intron	CDS	translocation	0	0	0	489	3	low	.	.	.	.	.	ENSG00000230876	ENSG00000184967	.	.	downstream	upstream	low_entropy	.	.	.
HLA-U	HLA-A	+/+	+/+	6:29934253	6:29943510	exon	CDS	deletion/read-through	0	0	0	1	8	low	.	.	\|Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(4%),Immunoglobulin_C1-set_domain(100%),MHC_I_C-terminus(100%)	.	.	ENSG00000228078	ENSG00000206503	.	.	downstream	upstream	read_through(1)	.	.	.
HLA-A	HLA-B	+/+	-/-	6:29944397	6:31355223	CDS/splice-site	CDS/splice-site	inversion	1	0	0	25	15	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%),Immunoglobulin_C1-set_domain(100%)\|MHC_I_C-terminus(100%)	.	.	ENSG00000206503	ENSG00000234745	.	.	downstream	downstream	min_support	.	.	.
FP671120.4	SP110	+/+	-/-	21:8215278	2:230214968	intron	CDS	translocation	0	1	0	8	6	low	.	.	\|HSR_domain(6%),SAND_domain(100%)	.	.	ENSG00000278996	ENSG00000135899	.	.	downstream	downstream	min_support	.	.	.
ZFC3H1	CBWD5	-/-	+/+	12:71663013	9:65732947	CDS/splice-site	exon/splice-site	translocation	0	1	0	0	0	low	.	.	\|Cobalamin_synthesis_protein_cobW_C-terminal_domain(56%)	.	.	ENSG00000133858	ENSG00000147996	.	.	upstream	upstream	min_support	.	.	.
ZFC3H1	CBWD3	-/-	+/+	12:71663013	9:68298918	CDS/splice-site	exon	translocation	0	0	0	0	1	low	.	.	\|Cobalamin_synthesis_protein_cobW_C-terminal_domain(56%)	.	.	ENSG00000133858	ENSG00000196873	.	.	upstream	upstream	multimappers(1)	.	.	.
LINC00486	DNAJC7	+/.	-/.	2:32916555	17:41988734	intron	CDS	translocation	0	0	0	489	0	low	.	.	.	.	.	ENSG00000230876	ENSG00000168259	.	.	downstream	downstream	low_entropy	.	.	.
RPSA	RPSA(7973),AC099332.2(129)	+/+	./+	3:39412341	3:39420515	CDS	intergenic	deletion/read-through	0	0	0	32	1	low	.	.	40S_ribosomal_protein_SA_C-terminus(91%),Ribosomal_protein_S2(100%)\|	.	.	ENSG00000168028	.	.	.	downstream	upstream	read_through(1)	.	.	.
PPIAP22	FP671120.6	+/+	-/+	21:18857953	21:8211064	exon	exon	duplication/5'-5'	1	0	0	8	24	low	.	.	.	.	.	ENSG00000198618	ENSG00000280800	.	.	downstream	upstream	min_support	.	.	.
PPIAP22	FP236383.5	+/+	-/+	21:18857953	21:8438309	exon	exon	duplication/5'-5'	0	0	0	8	26	low	.	.	.	.	.	ENSG00000198618	ENSG00000281181	.	.	downstream	upstream	multimappers(1)	.	.	.
TRIM22	TRIM22	+/+	+/+	11:5696355	11:5696174	CDS	5'UTR	duplication	0	1	0	8	4	low	.	.	zinc_finger_of_C3HC4-type__RING(60%)\|B-box_zinc_finger(100%),SPRY_domain(100%),zinc_finger_of_C3HC4-type__RING(100%)	.	.	ENSG00000132274	ENSG00000132274	.	.	downstream	upstream	intragenic_exonic	.	.	.
LINC00486	LSR	+/.	+/.	2:32916555	19:35267265	intron	CDS	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000105699	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	LSR	+/.	+/.	2:32916556	19:35267265	intron	CDS	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000105699	.	.	downstream	upstream	low_entropy	.	.	.
FIP1L1	LNX1	+/+	-/+	4:53459386	4:53459336	CDS	3'UTR	duplication/5'-5'	0	0	0	1	1	low	.	.	Fip1_motif(100%)\|	.	.	ENSG00000145216	ENSG00000072201	.	.	downstream	upstream	duplicates(1),hairpin(1)	.	.	.
LINC00486	RUBCN	+/.	-/.	2:32916555	3:197694473	intron	CDS	translocation	0	0	0	489	4	low	.	.	.	.	.	ENSG00000230876	ENSG00000145016	.	.	downstream	downstream	low_entropy	.	.	.
FP236383.3	LMNB1	+/-	+/+	21:8399899	5:126825999	intron	CDS	translocation/3'-3'	0	0	0	23	6	low	.	.	\|Lamin_Tail_Domain(39%)	.	.	ENSG00000280441	ENSG00000113368	.	.	upstream	upstream	multimappers(1)	.	.	.
FP671120.4	LMNB1	+/-	+/+	21:8216865	5:126825999	intron	CDS	translocation/3'-3'	0	1	0	36	6	low	.	.	\|Lamin_Tail_Domain(39%)	.	.	ENSG00000278996	ENSG00000113368	.	.	upstream	upstream	min_support	.	.	.
MRE11	OR5B2(2850),OR5B12(8106)	-/-	./+	11:94464129	11:58430971	CDS	intergenic	inversion	0	0	0	2	0	low	.	.	Calcineurin-like_phosphoesterase(100%),Mre11_DNA-binding_presumed_domain_(65%)\|	.	.	ENSG00000020922	.	.	.	upstream	upstream	mismatches(1)	.	.	.
HFM1	C1QBP	-/-	-/-	1:91387486	17:5439089	intron	5'UTR	translocation	0	1	0	2	8	low	.	.	\|Mitochondrial_glycoprotein(100%)	.	.	ENSG00000162669	ENSG00000108561	.	.	upstream	downstream	min_support	.	.	.
PABPC1	FP236383.3	-/-	+/+	8:100706689	21:8441712	CDS	intron	translocation	0	1	0	23	9	low	.	.	RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)\|	.	.	ENSG00000070756	ENSG00000280441	.	.	upstream	upstream	min_support	.	.	.
FP671120.6	DST	-/+	-/-	21:8210982	6:56474007	exon	exon	translocation/3'-3'	0	1	0	31	7	low	.	.	\|EF-hand_domain_pair(100%),Growth-Arrest-Specific_Protein_2_Domain(100%)	.	.	ENSG00000280800	ENSG00000151914	.	.	downstream	downstream	min_support	.	.	.
EIF4B	EIF4BP7	+/+	-/-	12:53039343	X:111619939	CDS/splice-site	exon	translocation	1	0	0	5	0	low	.	.	RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)\|	.	.	ENSG00000063046	ENSG00000225031	.	.	downstream	downstream	min_support	.	.	.
FP236383.5	DST	-/+	-/-	21:8438227	6:56474007	exon	exon	translocation/3'-3'	0	0	0	33	7	low	.	.	\|EF-hand_domain_pair(100%),Growth-Arrest-Specific_Protein_2_Domain(100%)	.	.	ENSG00000281181	ENSG00000151914	.	.	downstream	downstream	multimappers(1)	.	.	.
FP671120.7	DST	-/+	-/-	21:8255190	6:56474007	exon	exon	translocation/3'-3'	0	0	0	27	7	low	.	.	\|EF-hand_domain_pair(100%),Growth-Arrest-Specific_Protein_2_Domain(100%)	.	.	ENSG00000281383	ENSG00000151914	.	.	downstream	downstream	multimappers(1)	.	.	.
FP236383.4	DKC1	-/+	+/+	21:8393807	X:154766950	exon	intron	translocation/3'-3'	0	0	0	15	4	low	.	.	\|PUA_domain(100%),TruB_family_pseudouridylate_synthase_(N_terminal_domain)(65%),tRNA_pseudouridylate_synthase_B_C-terminal_domain(100%)	.	.	ENSG00000280614	ENSG00000130826	.	.	downstream	upstream	multimappers(1)	.	.	.
CD86	ILDR1	+/-	-/-	3:122060420	3:122007161	intron	CDS/splice-site	deletion/read-through/3'-3'	0	1	0	1	1	low	.	.	\|Lipolysis_stimulated_receptor_(LSR)(100%)	.	.	ENSG00000114013	ENSG00000145103	.	.	upstream	downstream	min_support	.	.	.
SETD3	GIGYF2	-/+	+/+	14:99420978	2:232791417	intron	CDS	translocation/3'-3'	0	0	0	0	2	low	.	.	\|GYF_domain(100%)	.	.	ENSG00000183576	ENSG00000204120	.	.	downstream	upstream	mismatches(1)	.	.	.
FER1L6-AS2(516),AC090921.1(20633)	GIGYF2	./+	+/+	8:124172038	2:232791417	intergenic	CDS	translocation	0	0	0	0	2	low	.	.	\|GYF_domain(100%)	.	.	.	ENSG00000204120	.	.	downstream	upstream	mismatches(1)	.	.	.
ARL17A	LRRC37A	-/-	+/-	17:46540957	17:46323097	intron	intron	deletion/read-through/5'-5'	0	1	0	0	1	low	.	.	ADP-ribosylation_factor-like_protein_17(100%),ADP-ribosylation_factor_family(97%)\|	.	.	ENSG00000185829	ENSG00000176681	.	.	upstream	downstream	min_support	.	.	.
LRRC37A2	LRRC37A	+/-	+/-	17:46540957	17:46323097	intron	intron	deletion/read-through	0	1	0	0	1	low	.	.	.	.	.	ENSG00000238083	ENSG00000176681	.	.	upstream	downstream	min_support	.	.	.
RPL23AP2	FP236383.3	+/+	+/+	19:15611951	21:8401741	exon	intron	translocation	0	0	0	6	31	low	.	.	.	.	.	ENSG00000225067	ENSG00000280441	.	.	downstream	upstream	multimappers(2)	.	.	.
RPL23A	FP236383.3	+/+	+/+	17:28722812	21:8401741	CDS	intron	translocation	0	0	1	49	31	low	.	.	Ribosomal_protein_L23(40%),Ribosomal_protein_L23__N-terminal_domain(100%)\|	.	.	ENSG00000198242	ENSG00000280441	.	.	downstream	upstream	min_support,multimappers(1)	.	.	.
RPL23AP42	FP236383.3	-/-	+/+	3:161429299	21:8401741	exon	intron	translocation	0	0	0	7	31	low	.	.	.	.	.	ENSG00000234851	ENSG00000280441	.	.	upstream	upstream	multimappers(2)	.	.	.
RPL23AP2	FP671120.4	+/+	+/+	19:15611951	21:8218702	exon	intron	translocation	0	0	0	6	42	low	.	.	.	.	.	ENSG00000225067	ENSG00000278996	.	.	downstream	upstream	multimappers(1)	.	.	.
RPL23AP2	FP236383.3	+/+	+/+	19:15611951	21:8445972	exon	intron	translocation	0	0	0	6	39	low	.	.	.	.	.	ENSG00000225067	ENSG00000280441	.	.	downstream	upstream	multimappers(1)	.	.	.
RPL23A	FP236383.3	+/+	+/+	17:28722812	21:8445972	CDS	intron	translocation	0	0	1	49	39	low	.	.	Ribosomal_protein_L23(40%),Ribosomal_protein_L23__N-terminal_domain(100%)\|	.	.	ENSG00000198242	ENSG00000280441	.	.	downstream	upstream	min_support	.	.	.
RPL23AP42	FP236383.3	-/-	+/+	3:161429299	21:8445972	exon	intron	translocation	0	0	0	7	39	low	.	.	.	.	.	ENSG00000234851	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
LINC00486	RALGAPB	+/.	+/.	2:32916555	20:38516352	intron	CDS	translocation	0	0	0	489	5	low	.	.	.	.	.	ENSG00000230876	ENSG00000170471	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	RALGAPB	+/.	+/.	2:32916556	20:38516352	intron	CDS	translocation	0	0	0	489	5	low	.	.	.	.	.	ENSG00000230876	ENSG00000170471	.	.	downstream	upstream	low_entropy	.	.	.
YY1	YY1	+/+	+/+	14:100239701	14:100239519	CDS	CDS	duplication	1	0	0	3	3	low	.	.	\|Zinc_finger__C2H2_type(100%)	.	.	ENSG00000100811	ENSG00000100811	.	.	downstream	upstream	intragenic_exonic	.	.	.
BIRC6	UBAP2L	+/+	+/+	2:32359624	1:154268763	intron	CDS	translocation	0	1	0	0	2	low	.	.	.	.	.	ENSG00000115760	ENSG00000143569	.	.	downstream	upstream	min_support	.	.	.
LINC00486	WDR4	+/.	-/.	2:32916555	21:42873618	intron	CDS	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000160193	.	.	downstream	downstream	low_entropy	.	.	.
LINC00486	FP671120.4	+/.	+/.	2:32916555	21:8218779	intron	intron	translocation	0	0	0	489	38	low	.	.	.	.	.	ENSG00000230876	ENSG00000278996	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	FP671120.4	+/.	+/.	2:32916556	21:8218779	intron	intron	translocation	0	0	0	489	38	low	.	.	.	.	.	ENSG00000230876	ENSG00000278996	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	GUF1	+/.	+/.	2:32916556	4:44678577	intron	5'UTR	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000151806	.	.	downstream	upstream	low_entropy	.	.	.
H2AC18	H2AC18	-/-	-/-	1:149842400	1:149842492	CDS	CDS	duplication/ITD	0	1	0	56	108	low	.	.	C-terminus_of_histone_H2A(24%),Core_histone_H2A/H2B/H3/H4(100%)\|C-terminus_of_histone_H2A(100%),Core_histone_H2A/H2B/H3/H4(23%)	.	.	ENSG00000203812	ENSG00000203812	.	.	upstream	downstream	duplicates(1),intragenic_exonic	.	.	.
LINC00486	SREBF1	+/.	-/.	2:32916461	17:17819559	intron	CDS	translocation	0	0	0	219	3	low	.	.	.	.	.	ENSG00000230876	ENSG00000072310	.	.	downstream	downstream	low_entropy	.	.	.
DTX2	DTX2P1-UPK3BP1-PMS2P11	+/+	+/+	7:76492253	7:76961657	CDS/splice-site	exon/splice-site	deletion	0	1	0	2	1	low	.	.	WWE_domain(100%)\|	.	.	ENSG00000091073	ENSG00000265479	.	.	downstream	upstream	min_support	.	.	.
RPL7	RPL7	-/-	-/-	8:73291061	8:73292797	CDS	CDS/splice-site	duplication	0	1	0	8	16	low	.	.	Ribosomal_L30_N-terminal_domain(100%),Ribosomal_protein_L30p/L7e(100%)\|Ribosomal_L30_N-terminal_domain(100%),Ribosomal_protein_L30p/L7e(100%)	.	.	ENSG00000147604	ENSG00000147604	.	.	upstream	downstream	min_support	.	.	.
LINC00486	PIEZO1	+/.	-/.	2:32916555	16:88719958	intron	CDS	translocation	0	0	0	489	6	low	.	.	.	.	.	ENSG00000230876	ENSG00000103335	.	.	downstream	downstream	low_entropy	.	.	.
LINC00486	PIEZO1	+/.	-/.	2:32916556	16:88719958	intron	CDS	translocation	0	0	0	489	6	low	.	.	.	.	.	ENSG00000230876	ENSG00000103335	.	.	downstream	downstream	low_entropy	.	.	.
FP236383.3	MICOS10-NBL1	+/+	+/+	21:8441911	1:19597013	intron	intergenic	translocation	0	1	0	112	2	low	.	.	.	.	.	ENSG00000280441	ENSG00000270136	.	.	downstream	upstream	min_support	.	.	.
FP236383.3	NBL1	+/+	+/+	21:8441911	1:19597013	intron	5'UTR	translocation	0	1	0	112	2	low	.	.	\|DAN_domain(100%)	.	.	ENSG00000280441	ENSG00000158747	.	.	downstream	upstream	min_support	.	.	.
FP671120.4	FP236383.3	+/+	+/+	21:8214649	21:8441913	intron	intron	deletion/read-through	0	0	0	84	342	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
5_8S_rRNA(1939),FP236383.3(121771)	FP236383.3	./+	+/+	21:8258872	21:8441913	intergenic	intron	deletion/read-through	0	0	0	103	342	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	5_8S_rRNA(1945),FP236383.3(121765)	+/+	./+	21:8214649	21:8258878	intron	intergenic	deletion/read-through	0	0	0	84	281	low	.	.	.	.	.	ENSG00000278996	.	.	.	downstream	upstream	mismatches(1)	.	.	.
5_8S_rRNA(2082),FP236383.3(121628)	SMARCA2	./-	+/+	21:8259015	9:2084182	intergenic	CDS	translocation	0	0	0	491	0	low	.	.	\|Bromodomain(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(64%),Snf2-ATP_coupling__chromatin_remodelling_complex(100%)	.	.	.	ENSG00000080503	.	.	upstream	upstream	multimappers(1)	.	.	.
FP236383.3	SMARCA2	+/-	+/+	21:8442050	9:2084182	intron	CDS	translocation/3'-3'	0	0	0	519	0	low	.	.	\|Bromodomain(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(64%),Snf2-ATP_coupling__chromatin_remodelling_complex(100%)	.	.	ENSG00000280441	ENSG00000080503	.	.	upstream	upstream	multimappers(1)	.	.	.
FP671120.4	SMARCA2	+/-	+/+	21:8214786	9:2084182	intron	CDS	translocation/3'-3'	0	1	0	171	0	low	.	.	\|Bromodomain(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(64%),Snf2-ATP_coupling__chromatin_remodelling_complex(100%)	.	.	ENSG00000278996	ENSG00000080503	.	.	upstream	upstream	min_support	.	.	.
MYO1B(43565),NABP1(209114)	HMGCS1	./+	-/-	2:191468954	5:43294833	intergenic	CDS	translocation	0	1	0	0	2	low	.	.	\|Hydroxymethylglutaryl-coenzyme_A_synthase_C_terminal(55%)	.	.	.	ENSG00000112972	.	.	downstream	downstream	min_support	.	.	.
FP671120.4	BAG6	+/+	-/-	21:8217817	6:31651743	intron	CDS	translocation	0	0	0	23	7	low	.	.	\|BCL2-associated_athanogene_6(100%),Ubiquitin_family(100%)	.	.	ENSG00000278996	ENSG00000204463	.	.	downstream	downstream	mismatches(1)	.	.	.
FP236383.3	BAG6	+/+	-/-	21:8400855	6:31651743	intron	CDS	translocation	0	0	0	23	7	low	.	.	\|BCL2-associated_athanogene_6(100%),Ubiquitin_family(100%)	.	.	ENSG00000280441	ENSG00000204463	.	.	downstream	downstream	mismatches(1)	.	.	.
FBXO42	FP236383.3	-/-	+/+	1:16251663	21:8442373	CDS	intron	translocation	0	0	0	4	7	low	.	.	F-box-like(100%),Galactose_oxidase__central_domain(100%),Kelch_motif(100%)\|	.	.	ENSG00000037637	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
FBXO42	5_8S_rRNA(2406),FP236383.3(121304)	-/-	./+	1:16251663	21:8259339	CDS	intergenic	translocation	0	0	0	4	7	low	.	.	F-box-like(100%),Galactose_oxidase__central_domain(100%),Kelch_motif(100%)\|	.	.	ENSG00000037637	.	.	.	upstream	upstream	multimappers(1)	.	.	.
FBXO42	FP236383.3	-/-	+/+	1:16251663	21:8398144	CDS	intron	translocation	0	0	0	4	7	low	.	.	F-box-like(100%),Galactose_oxidase__central_domain(100%),Kelch_motif(100%)\|	.	.	ENSG00000037637	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
FAAP24	RHPN2	+/+	-/+	19:32974175	19:32990456	CDS	exon	deletion/read-through/5'-5'	0	0	0	1	1	low	.	.	FANCM_pseudonuclease_domain(88%)\|	.	.	ENSG00000131944	ENSG00000131941	.	.	downstream	upstream	read_through	.	.	.
FP671120.4	ZFP36L1	+/+	-/-	21:8214239	14:68793050	intron	CDS	translocation	1	0	0	28	7	low	.	.	\|Tis11B_like_protein__N_terminus(100%),Zinc_finger_C-x8-C-x5-C-x3-H_type_(and_similar)(100%)	.	.	ENSG00000278996	ENSG00000185650	.	.	downstream	downstream	min_support	.	.	.
5_8S_rRNA(1527),FP236383.3(122183)	ZFP36L1	./+	-/-	21:8258460	14:68793050	intergenic	CDS	translocation	0	0	0	26	7	low	.	.	\|Tis11B_like_protein__N_terminus(100%),Zinc_finger_C-x8-C-x5-C-x3-H_type_(and_similar)(100%)	.	.	.	ENSG00000185650	.	.	downstream	downstream	multimappers(1)	.	.	.
FBXW5	FP671120.6	-/-	-/+	9:136940899	21:8210892	3'UTR	exon	translocation/5'-5'	1	0	0	7	23	low	.	.	F-box-like(100%),WD_domain__G-beta_repeat(100%)\|	.	.	ENSG00000159069	ENSG00000280800	.	.	upstream	upstream	min_support	.	.	.
FBXW5	FP236383.4	-/-	-/+	9:136940899	21:8393927	3'UTR	exon	translocation/5'-5'	0	0	0	7	25	low	.	.	F-box-like(100%),WD_domain__G-beta_repeat(100%)\|	.	.	ENSG00000159069	ENSG00000280614	.	.	upstream	upstream	multimappers(1)	.	.	.
FBXW5	FP671120.7	-/-	-/+	9:136940899	21:8255100	3'UTR	exon	translocation/5'-5'	0	0	0	7	20	low	.	.	F-box-like(100%),WD_domain__G-beta_repeat(100%)\|	.	.	ENSG00000159069	ENSG00000281383	.	.	upstream	upstream	multimappers(1)	.	.	.
LINC00486	5_8S_rRNA(2016),FP236383.3(121694)	+/.	./.	2:32916555	21:8258949	intron	intergenic	translocation	0	0	0	489	511	low	.	.	.	.	.	ENSG00000230876	.	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	5_8S_rRNA(2016),FP236383.3(121694)	+/.	./.	2:32916556	21:8258949	intron	intergenic	translocation	0	0	0	489	511	low	.	.	.	.	.	ENSG00000230876	.	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916555	21:8441984	intron	intron	translocation	0	0	0	489	563	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916556	21:8441984	intron	intron	translocation	0	0	0	489	563	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	downstream	upstream	low_entropy	.	.	.
HLA-C	PARD3B	-/-	+/-	6:31271073	2:204546289	CDS/splice-site	intron	translocation/5'-5'	0	0	0	74	0	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%)\|	.	.	ENSG00000204525	ENSG00000116117	.	.	upstream	downstream	mismatches(1)	.	.	.
HLA-C	ITGA9	-/-	+/+	6:31271073	3:37596929	CDS/splice-site	intron	translocation	0	0	0	74	0	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%)\|Integrin_alpha(75%)	.	.	ENSG00000204525	ENSG00000144668	.	.	upstream	upstream	mismatches(1)	.	.	.
HLA-C	MYOSLID	-/-	+/-	6:31271073	2:207245799	CDS/splice-site	exon	translocation/5'-5'	0	0	0	74	0	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%)\|	.	.	ENSG00000204525	ENSG00000229647	.	.	upstream	downstream	mismatches(1)	.	.	.
HLA-C	OFD1P5Y	-/-	-/+	6:31271073	Y:18606264	CDS/splice-site	intron	translocation/5'-5'	0	0	0	74	0	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%)\|	.	.	ENSG00000204525	ENSG00000240438	.	.	upstream	upstream	mismatches(1)	.	.	.
HLA-C	OFD1P6Y	-/-	+/-	6:31271073	Y:18714138	CDS/splice-site	intron	translocation/5'-5'	0	0	0	74	0	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%)\|	.	.	ENSG00000204525	ENSG00000242153	.	.	upstream	downstream	mismatches(1)	.	.	.
HLA-C	DCUN1D2	-/-	-/+	6:31271073	13:113482306	CDS/splice-site	intron	translocation/5'-5'	0	0	0	74	0	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%)\|	.	.	ENSG00000204525	ENSG00000150401	.	.	upstream	upstream	mismatches(1)	.	.	.
HLA-C	UMAD1	-/-	+/-	6:31271073	7:7783457	CDS/splice-site	intron	translocation/5'-5'	0	0	0	74	0	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%)\|	.	.	ENSG00000204525	ENSG00000219545	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	HMBS	+/.	+/.	2:32916558	11:119089233	intron	CDS	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000256269	.	.	downstream	upstream	low_entropy	.	.	.
FP671120.4	FP236383.3	+/+	+/+	21:8216940	21:8399143	intron	intron	deletion/read-through	0	0	0	31	71	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	5_8S_rRNA(3405),FP236383.3(120305)	+/+	./+	21:8216940	21:8260338	intron	intergenic	deletion/read-through	0	0	0	31	62	low	.	.	.	.	.	ENSG00000278996	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/+	+/+	21:8216097	21:8443378	intron	intron	deletion/read-through	0	0	0	54	61	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	AGAP4	+/.	-/.	2:32916554	10:45826034	intron	CDS	translocation	0	0	0	489	4	low	.	.	.	.	.	ENSG00000230876	ENSG00000188234	.	.	downstream	downstream	low_entropy	.	.	.
LINC00486	AGAP4	+/.	-/.	2:32916555	10:45826034	intron	CDS	translocation	0	0	0	489	4	low	.	.	.	.	.	ENSG00000230876	ENSG00000188234	.	.	downstream	downstream	low_entropy	.	.	.
HLA-C	HLA-A	-/-	+/+	6:31272000	6:29942756	CDS/splice-site	intron	inversion	0	1	0	5	39	low	.	.	\|Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(99%),Immunoglobulin_C1-set_domain(100%),MHC_I_C-terminus(100%)	.	.	ENSG00000204525	ENSG00000206503	.	.	upstream	upstream	min_support	.	.	.
LINC00486	AGAP4	+/.	-/.	2:32916556	10:45826034	intron	CDS	translocation	0	0	0	489	4	low	.	.	.	.	.	ENSG00000230876	ENSG00000188234	.	.	downstream	downstream	low_entropy	.	.	.
EIF5B	EIF5B	+/+	+/+	2:99364338	2:99363836	CDS	CDS	duplication	0	0	0	5	4	low	.	.	\|Elongation_factor_Tu_GTP_binding_domain(100%),Elongation_factor_Tu_domain_2(100%),Translation-initiation_factor_2(100%)	.	.	ENSG00000158417	ENSG00000158417	.	.	downstream	upstream	hairpin(1)	.	.	.
HARS1	5_8S_rRNA(2117),FP236383.3(121593)	-/-	./+	5:140691215	21:8259050	CDS/splice-site	intergenic	translocation	0	0	0	6	279	low	.	.	WHEP-TRS_domain(61%)\|	.	.	ENSG00000170445	.	.	.	upstream	upstream	multimappers(1)	.	.	.
SGCZ	CCT7	-/-	+/+	8:15190989	2:73244034	intron	CDS	translocation	0	0	0	0	0	low	.	.	\|TCP-1/cpn60_chaperonin_family(76%)	.	.	ENSG00000185053	ENSG00000135624	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	RPS2P55	+/-	-/-	21:8444201	X:40935778	intron	exon	translocation/3'-3'	0	0	0	6	21	low	.	.	.	.	.	ENSG00000280441	ENSG00000216866	.	.	upstream	downstream	multimappers(1)	.	.	.
FP671120.4	AC098484.4	+/+	-/+	21:8214772	1:42675795	intron	exon	translocation/5'-5'	0	0	0	135	0	low	.	.	.	.	.	ENSG00000278996	ENSG00000285728	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	MICOS10	+/+	+/+	21:8441911	1:19597013	intron	5'UTR	translocation	0	1	0	112	2	low	.	.	\|Domain_of_unknown_function_(DUF543)(100%)	.	.	ENSG00000280441	ENSG00000173436	.	.	downstream	upstream	min_support	.	.	.
AC012485.3	CCT7	+/-	+/+	2:238300125	2:73244034	exon	CDS	inversion/3'-3'	0	0	0	0	0	low	.	.	\|TCP-1/cpn60_chaperonin_family(76%)	.	.	ENSG00000283635	ENSG00000135624	.	.	upstream	upstream	mismatches(1)	.	.	.
PDE3B	CR392039.1(942),CR392039.3(8124)	+/+	./+	11:14645021	21:8988372	CDS	intergenic	translocation	0	0	0	5	9	low	.	.	.	.	.	ENSG00000152270	.	.	.	downstream	upstream	multimappers(1)	.	.	.
PTPRD	CCT7	-/-	+/+	9:10420974	2:73244033	intron	CDS	translocation	0	0	0	0	0	low	.	.	\|TCP-1/cpn60_chaperonin_family(77%)	.	.	ENSG00000153707	ENSG00000135624	.	.	upstream	upstream	mismatches(1)	.	.	.
HLA-H	HLA-A	+/+	+/+	6:29889604	6:29944500	exon/splice-site	CDS/splice-site	deletion/read-through	0	0	0	2	32	low	.	.	\|MHC_I_C-terminus(100%)	.	.	ENSG00000206341	ENSG00000206503	.	.	downstream	upstream	low_entropy(1)	.	.	.
LINC00971	CCT7	-/-	+/+	3:84820583	2:73244033	intron	CDS	translocation	0	0	0	0	0	low	.	.	\|TCP-1/cpn60_chaperonin_family(77%)	.	.	ENSG00000242641	ENSG00000135624	.	.	upstream	upstream	mismatches(1)	.	.	.
5_8S_rRNA(3393),FP236383.3(120317)	FP236383.3	./+	+/+	21:8260326	21:8399143	intergenic	intron	deletion/read-through	0	0	0	68	71	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	MYO19	+/.	-/.	2:32916555	17:36515987	intron	CDS	translocation	0	0	0	489	5	low	.	.	.	.	.	ENSG00000230876	ENSG00000278259	.	.	downstream	downstream	low_entropy	.	.	.
RALGAPA1	DOCK2	-/+	+/+	14:35617662	5:170082833	intron	CDS	translocation/3'-3'	0	0	0	0	6	low	.	.	.	.	.	ENSG00000174373	ENSG00000134516	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
AC243725.1(166741),ABBA01006766.1(106381)	CCT7	./+	+/+	17:21950206	2:73244035	intergenic	CDS	translocation	0	0	0	0	0	low	.	.	\|TCP-1/cpn60_chaperonin_family(76%)	.	.	.	ENSG00000135624	.	.	downstream	upstream	mismatches(1)	.	.	.
HLA-C	RNA5-8SN2	-/-	+/+	6:31271232	21:8212650	CDS	exon	translocation	0	0	0	36	2	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(72%)\|	.	.	ENSG00000204525	ENSG00000278233	.	.	upstream	upstream	mismatches	.	.	.
CCT7	CCT7	+/+	+/+	2:73244694	2:73244039	CDS	CDS	duplication	0	0	0	3	0	low	.	.	TCP-1/cpn60_chaperonin_family(34%)\|TCP-1/cpn60_chaperonin_family(76%)	.	.	ENSG00000135624	ENSG00000135624	.	.	downstream	upstream	mismatches(1)	.	.	.
VPS51	FP236383.3	+/+	+/+	11:65110721	21:8393006	CDS	intron	translocation	0	0	0	6	14	low	.	.	Vps51/Vps67(100%)\|	.	.	ENSG00000149823	ENSG00000280441	.	.	downstream	upstream	multimappers(1)	.	.	.
LINC00486	5_8S_rRNA(2017),FP236383.3(121693)	+/.	./.	2:32916556	21:8258950	intron	intergenic	translocation	0	0	0	489	511	low	.	.	.	.	.	ENSG00000230876	.	.	.	downstream	upstream	low_entropy	.	.	.
VPS51	CR392039.1(1082),CR392039.3(7984)	+/+	./+	11:65110721	21:8988512	CDS	intergenic	translocation	0	0	0	6	5	low	.	.	Vps51/Vps67(100%)\|	.	.	ENSG00000149823	.	.	.	downstream	upstream	multimappers(1)	.	.	.
5_8S_rRNA(3332),FP236383.3(120378)	FP236383.3	./+	+/+	21:8260265	21:8399068	intergenic	intron	deletion/read-through	0	0	0	31	64	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(3),inconsistently_clipped(1),mismatches(1),multimappers(3)	.	.	.
LINC00486	CANX	+/+	+/+	2:32916543	5:179705762	intron	CDS	translocation	0	0	0	489	1	low	.	.	\|Calreticulin_family(100%)	.	.	ENSG00000230876	ENSG00000127022	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
AC134669.1	EVI2B	-/-	-/-	17:31305223	17:31305290	3'UTR	CDS	duplication	0	0	0	7	6	low	.	.	Ectropic_viral_integration_site_2A_protein_(EVI2A)(100%)\|	.	.	ENSG00000265118	ENSG00000185862	.	.	upstream	downstream	hairpin(1),inconsistently_clipped(1)	.	.	.
FER1L6-AS2(512),AC090921.1(20637)	ATP5MC2	./+	-/-	8:124172034	12:53672670	intergenic	exon	translocation	0	0	0	0	4	low	.	.	\|ATP_synthase_subunit_C(100%)	.	.	.	ENSG00000135390	.	.	downstream	downstream	homopolymer(1)	.	.	.
LINC00486	SERINC1	+/+	-/-	2:32916552	6:122456598	intron	CDS	translocation	0	0	0	489	15	low	.	.	\|Serine_incorporator_(Serinc)(84%)	.	.	ENSG00000230876	ENSG00000111897	.	.	downstream	downstream	homopolymer(1)	.	.	.
LINC00486	IL17RA	+/.	+/.	2:32916555	22:17109658	intron	CDS	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000177663	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	TK1	+/+	-/-	2:32916436	17:78182644	intron	CDS	translocation	0	0	0	207	2	low	.	.	\|Thymidine_kinase(63%)	.	.	ENSG00000230876	ENSG00000167900	.	.	downstream	downstream	mismatches(1)	.	.	.
CCZ1B	CCZ1	-/-	+/+	7:6800948	7:5923387	CDS/splice-site	CDS/splice-site	inversion	0	0	0	4	4	low	.	.	First_Longin_domain_of_INTU__CCZ1_and_HPS4(100%),Intu_longin-like_domain_2(100%),Intu_longin-like_domain_3(94%)\|Intu_longin-like_domain_3(100%)	.	.	ENSG00000146574	ENSG00000122674	.	.	upstream	upstream	mismatches(1)	.	.	.
UQCRH	LINC00486	+/.	+/.	1:46316626	2:32916550	3'UTR	intron	translocation	0	0	0	10	489	low	.	.	.	.	.	ENSG00000173660	ENSG00000230876	.	.	upstream	downstream	low_entropy	.	.	.
LINC00486	ACADVL	+/.	+/.	2:32916559	17:7220032	intron	CDS	translocation	0	0	0	489	0	low	.	.	.	.	.	ENSG00000230876	ENSG00000072778	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	RPS14	+/+	-/-	2:32916371	5:150446846	intron	CDS	translocation	0	0	0	50	33	low	.	.	\|Ribosomal_protein_S11(49%)	.	.	ENSG00000230876	ENSG00000164587	.	.	downstream	downstream	inconsistently_clipped(1)	.	.	.
P4HB	FP671120.4	-/-	+/+	17:81845154	21:8216850	CDS	intron	translocation	0	0	0	9	41	low	.	.	Thioredoxin(97%),Thioredoxin-like_domain(100%)\|	.	.	ENSG00000185624	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
AC010266.1(82157),AC026797.1(21305)	CCT7	./-	+/+	5:6112998	2:73244034	intergenic	CDS	translocation	0	0	0	0	0	low	.	.	\|TCP-1/cpn60_chaperonin_family(76%)	.	.	.	ENSG00000135624	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	RBM6	+/+	+/+	21:8397647	3:49975333	intron	CDS	translocation	0	0	0	10	7	low	.	.	\|G-patch_domain(100%),OCRE_domain(100%)	.	.	ENSG00000280441	ENSG00000004534	.	.	downstream	upstream	multimappers(1)	.	.	.
FP236383.3	MOV10	+/-	+/+	21:8444054	1:112695444	intron	CDS	translocation/3'-3'	0	0	0	30	5	low	.	.	\|AAA_domain(87%)	.	.	ENSG00000280441	ENSG00000155363	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/+	+/+	21:8214734	21:8441996	intron	intron	deletion/read-through	0	0	0	81	563	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
5_8S_rRNA(3284),FP236383.3(120426)	ZFHX3	./+	-/-	21:8260217	16:72795476	intergenic	CDS	translocation	0	0	0	29	4	low	.	.	\|Homeodomain(50%)	.	.	.	ENSG00000140836	.	.	downstream	downstream	multimappers(1)	.	.	.
AMIGO3	LINC00486	-/-	+/-	3:49718810	2:32916405	CDS	intron	translocation/5'-5'	0	0	0	6	50	low	.	.	Leucine_rich_repeat(100%)\|	.	.	ENSG00000176020	ENSG00000230876	.	.	upstream	downstream	mismatches	.	.	.
POM121C	POM121C	-/-	-/-	7:75437521	7:75437574	CDS	CDS	duplication/ITD	0	0	0	2	2	low	.	.	POM121_family(44%)\|POM121_family(62%)	.	.	ENSG00000272391	ENSG00000272391	.	.	upstream	downstream	inconsistently_clipped(1)	.	.	.
POM121C	POM121	-/-	+/+	7:75437521	7:72930052	CDS	CDS	inversion	1	0	0	2	4	low	.	.	POM121_family(44%)\|POM121_family(63%)	.	.	ENSG00000272391	ENSG00000196313	.	.	upstream	upstream	min_support	.	.	.
H1-4	H1-4	+/-	+/-	6:26156792	6:26156860	CDS	CDS	duplication/ITD	1	0	0	34	34	low	.	.	.	.	.	ENSG00000168298	ENSG00000168298	.	.	upstream	downstream	intragenic_exonic,low_entropy(1)	.	.	.
HLA-DQB1	HLA-DQB1	-/-	-/-	6:32666499	6:32665067	CDS/splice-site	CDS/splice-site	deletion/read-through	0	0	0	1	0	low	.	.	\|Class_II_histocompatibility_antigen__beta_domain(100%),Immunoglobulin_C1-set_domain(100%)	.	.	ENSG00000179344	ENSG00000179344	.	.	upstream	downstream	read_through(1)	.	.	.
FP671120.6	PFN1	-/+	-/-	21:8210663	17:4948429	exon	CDS	translocation/3'-3'	0	1	0	30	31	low	.	.	\|Profilin(100%)	.	.	ENSG00000280800	ENSG00000108518	.	.	downstream	downstream	min_support	.	.	.
RABGGTB	LINC00486	+/.	+/.	1:75792280	2:32916552	CDS	intron	translocation	0	0	0	8	489	low	.	.	.	.	.	ENSG00000137955	ENSG00000230876	.	.	upstream	downstream	low_entropy	.	.	.
LINC00486	MKI67	+/.	-/.	2:32916276	10:128102700	intron	CDS	translocation/3'-3'	0	0	0	332	11	low	.	.	.	.	.	ENSG00000230876	ENSG00000148773	.	.	upstream	downstream	mismatches	.	.	.
SCAF8	FP671120.4	+/+	+/-	6:154832859	21:8209871	CDS	intron	translocation/5'-5'	1	0	0	6	21	low	.	.	CID_domain(100%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)\|	.	.	ENSG00000213079	ENSG00000278996	.	.	downstream	downstream	min_support	.	.	.
RASA4DP	AC105052.1	-/-	-/-	7:102682085	7:102582868	exon	3'UTR	deletion/read-through	0	0	0	4	6	low	.	.	.	.	.	ENSG00000233297	ENSG00000205236	.	.	upstream	downstream	multimappers(1)	.	.	.
ANKRD36	ANKRD36B	+/+	-/-	2:97187226	2:97560737	CDS/splice-site	CDS/splice-site	inversion	1	0	0	1	0	low	.	.	Ankyrin_repeats_(3_copies)(100%)\|CCDC144C_protein_coiled-coil_region(100%)	.	.	ENSG00000135976	ENSG00000196912	.	.	downstream	downstream	min_support	.	.	.
ARPC2	RN7SL340P(24493),AC007786.4(11098)	+/+	./+	2:218254122	19:29257878	3'UTR	intergenic	translocation	0	0	0	4	0	low	.	.	Arp2/3_complex__34_kD_subunit_p34-Arc(100%)\|	.	.	ENSG00000163466	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
HLA-B	HLA-A	-/-	+/+	6:31357086	6:29942757	CDS/splice-site	CDS/splice-site	inversion	0	0	0	9	39	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(0%)\|Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(99%),Immunoglobulin_C1-set_domain(100%),MHC_I_C-terminus(100%)	.	.	ENSG00000234745	ENSG00000206503	.	.	upstream	upstream	mismatches(1)	.	.	.
HLA-L	HLA-A	+/+	+/+	6:30259697	6:29942757	exon/splice-site	CDS/splice-site	duplication	0	0	0	0	39	low	.	.	\|Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(99%),Immunoglobulin_C1-set_domain(100%),MHC_I_C-terminus(100%)	.	.	ENSG00000243753	ENSG00000206503	.	.	downstream	upstream	mismatches(1)	.	.	.
CCDC47	DHX34	-/-	+/+	17:63765284	19:47353001	intron	5'UTR	translocation	0	0	0	0	17	low	.	.	\|Helicase_associated_domain_(HA2)(100%),Helicase_conserved_C-terminal_domain(100%),Oligonucleotide/oligosaccharide-binding_(OB)-fold(100%)	.	.	ENSG00000108588	ENSG00000134815	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
LINC00486	KDM5C	+/.	-/.	2:32916408	X:53224888	intron	CDS	translocation	0	0	0	50	3	low	.	.	.	.	.	ENSG00000230876	ENSG00000126012	.	.	downstream	downstream	mismatches	.	.	.
SNTB1	ALCAM	-/-	+/+	8:120722171	3:105545227	intron	CDS	translocation	0	0	0	0	1	low	.	.	PDZ_domain(99%)\|	.	.	ENSG00000172164	ENSG00000170017	.	.	upstream	upstream	mismatches(1)	.	.	.
AC108467.1(70236),THAP12P9(201365)	DHX34	./+	+/+	4:45121888	19:47353001	intergenic	5'UTR	translocation	0	0	0	0	17	low	.	.	\|Helicase_associated_domain_(HA2)(100%),Helicase_conserved_C-terminal_domain(100%),Oligonucleotide/oligosaccharide-binding_(OB)-fold(100%)	.	.	.	ENSG00000134815	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
LINC00486	TK1	+/+	-/-	2:32916521	17:78182644	intron	CDS	translocation	0	0	0	492	2	low	.	.	\|Thymidine_kinase(63%)	.	.	ENSG00000230876	ENSG00000167900	.	.	downstream	downstream	mismatches(1)	.	.	.
AL592466.1(7458),LINC01515(247800)	CCT7	./-	+/+	10:65322538	2:73244034	intergenic	CDS	translocation	0	0	0	0	0	low	.	.	\|TCP-1/cpn60_chaperonin_family(76%)	.	.	.	ENSG00000135624	.	.	upstream	upstream	mismatches(1)	.	.	.
NCOA7-AS1	DHX34	-/+	+/+	6:125812983	19:47353001	intron	5'UTR	translocation/3'-3'	0	0	0	0	17	low	.	.	\|Helicase_associated_domain_(HA2)(100%),Helicase_conserved_C-terminal_domain(100%),Oligonucleotide/oligosaccharide-binding_(OB)-fold(100%)	.	.	ENSG00000232131	ENSG00000134815	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
LINC00486	RPS14	+/+	-/-	2:32916372	5:150446846	intron	CDS	translocation	0	0	0	50	33	low	.	.	\|Ribosomal_protein_S11(49%)	.	.	ENSG00000230876	ENSG00000164587	.	.	downstream	downstream	inconsistently_clipped(1)	.	.	.
LINC00486	ACADVL	+/.	+/.	2:32916554	17:7220032	intron	CDS	translocation	0	0	0	489	0	low	.	.	.	.	.	ENSG00000230876	ENSG00000072778	.	.	downstream	upstream	mismatches	.	.	.
FP236383.3	SMARCA2	+/-	+/+	21:8397820	9:2084182	intron	CDS	translocation/3'-3'	0	0	0	119	0	low	.	.	\|Bromodomain(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(64%),Snf2-ATP_coupling__chromatin_remodelling_complex(100%)	.	.	ENSG00000280441	ENSG00000080503	.	.	upstream	upstream	multimappers(1)	.	.	.
LINC01108(67567),AL080313.2(38073)	DHX34	./-	+/+	6:14353021	19:47353001	intergenic	5'UTR	translocation	0	0	0	0	17	low	.	.	\|Helicase_associated_domain_(HA2)(100%),Helicase_conserved_C-terminal_domain(100%),Oligonucleotide/oligosaccharide-binding_(OB)-fold(100%)	.	.	.	ENSG00000134815	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
AC133480.1(347461),AC090503.2(39652)	AL133415.1	./+	-/+	12:73076305	10:17233587	intergenic	exon	translocation	0	0	0	0	7	low	.	.	.	.	.	.	ENSG00000234961	.	.	downstream	upstream	mismatches(1)	.	.	.
VKORC1L1	VKORC1L1	+/+	+/+	7:65954413	7:65954323	3'UTR	CDS	duplication/ITD	0	0	0	2	3	low	.	.	Vitamin_K_epoxide_reductase_family(100%)\|	.	.	ENSG00000196715	ENSG00000196715	.	.	downstream	upstream	duplicates(1),hairpin(1)	.	.	.
RPL27A	FP236383.3	+/+	+/+	11:8685785	21:8392677	CDS	intron	translocation	0	0	0	43	8	low	.	.	Ribosomal_proteins_50S-L15__50S-L18e__60S-L27A(97%)\|	.	.	ENSG00000166441	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916555	21:8443331	intron	intron	translocation	0	0	0	489	41	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	downstream	upstream	low_entropy	.	.	.
FP236383.4	RPL19	-/+	+/+	21:8393852	17:39204083	exon	CDS	translocation/3'-3'	0	0	0	13	36	low	.	.	\|Ribosomal_protein_L19e(17%)	.	.	ENSG00000280614	ENSG00000108298	.	.	downstream	upstream	multimappers(1)	.	.	.
LINC00486	PI4K2B	+/.	+/.	2:32916403	4:25234137	intron	5'UTR	translocation	0	0	0	50	14	low	.	.	.	.	.	ENSG00000230876	ENSG00000038210	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	PI4K2B	+/.	+/.	2:32916405	4:25234137	intron	5'UTR	translocation	0	0	0	50	14	low	.	.	.	.	.	ENSG00000230876	ENSG00000038210	.	.	downstream	upstream	mismatches	.	.	.
PPP2R5C	FP236383.3	+/+	+/+	14:101912574	21:8400885	3'UTR	intron	translocation	0	0	0	0	31	low	.	.	Protein_phosphatase_2A_regulatory_B_subunit_(B56_family)(100%)\|	.	.	ENSG00000078304	ENSG00000280441	.	.	downstream	upstream	duplicates(1)	.	.	.
LINC00486	PI4K2B	+/.	+/.	2:32916411	4:25234137	intron	5'UTR	translocation	0	0	0	50	14	low	.	.	.	.	.	ENSG00000230876	ENSG00000038210	.	.	downstream	upstream	mismatches	.	.	.
PJA2	AC008467.1(4272),PJA2(4072)	-/-	./-	5:109344190	5:109330641	CDS/splice-site	intergenic	deletion/read-through	0	0	0	0	1	low	.	.	Ring_finger_domain(80%)\|	.	.	ENSG00000198961	.	.	.	upstream	downstream	read_through(1)	.	.	.
UQCRC2	UQCRC2	+/+	+/+	16:21976243	16:21968628	CDS/splice-site	CDS/splice-site	duplication/non-canonical_splicing	1	0	0	1	3	low	.	.	Insulinase_(Peptidase_family_M16)(100%),Peptidase_M16_inactive_domain(96%)\|Peptidase_M16_inactive_domain(96%)	.	.	ENSG00000140740	ENSG00000140740	.	.	downstream	upstream	min_support	.	.	.
LCP1	FP236383.3	-/-	+/-	13:46142404	21:8400579	CDS	intron	translocation/5'-5'	1	0	0	0	14	low	.	.	Calponin_homology_(CH)_domain(67%),EF-hand_domain_pair(100%)\|	.	.	ENSG00000136167	ENSG00000280441	.	.	upstream	downstream	min_support	.	.	.
RNF38(17833),MELK(67481)	RPL14	./-	+/+	9:36505381	3:40462015	intergenic	CDS	translocation	0	0	0	0	60	low	.	.	.	.	.	.	ENSG00000188846	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.6	COA4	-/+	-/-	21:8210512	11:73873290	exon	CDS	translocation/3'-3'	0	0	0	21	6	low	.	.	.	.	.	ENSG00000280800	ENSG00000181924	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	PI4K2B	+/.	+/.	2:32916413	4:25234137	intron	5'UTR	translocation	0	0	0	50	14	low	.	.	.	.	.	ENSG00000230876	ENSG00000038210	.	.	downstream	upstream	mismatches	.	.	.
STAG3L5P-PVRIG2P-PILRB	PILRA	+/+	+/+	7:100358366	7:100374044	exon/splice-site	CDS/splice-site	deletion/read-through	0	0	0	2	1	low	.	.	\|Immunoglobulin_V-set_domain(100%)	.	.	ENSG00000272752	ENSG00000085514	.	.	downstream	upstream	read_through(1)	.	.	.
AMIGO3	LINC00486	-/-	+/-	3:49718810	2:32916403	CDS	intron	translocation/5'-5'	0	0	0	6	50	low	.	.	Leucine_rich_repeat(100%)\|	.	.	ENSG00000176020	ENSG00000230876	.	.	upstream	downstream	mismatches	.	.	.
FP671120.4	H2AC19	+/+	+/+	21:8211466	1:149851144	intron	CDS	translocation	0	0	0	6	72	low	.	.	\|C-terminus_of_histone_H2A(100%),Core_histone_H2A/H2B/H3/H4(92%)	.	.	ENSG00000278996	ENSG00000272196	.	.	downstream	upstream	multimappers(1)	.	.	.
FP671120.3(2418),FP671120.7(2025)	FP236383.3	./+	+/+	21:8252567	21:8400399	intergenic	intron	deletion/read-through	0	0	0	3	87	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
COA6	LINC00486	+/.	+/.	1:234373604	2:32916569	CDS	intron	translocation	0	0	0	2	480	low	.	.	.	.	.	ENSG00000168275	ENSG00000230876	.	.	upstream	downstream	low_entropy	.	.	.
TMEM120A	TMEM120A	-/-	-/-	7:75987504	7:75987499	exon	exon	deletion/read-through	0	0	0	1	1	low	.	.	TMPIT-like_protein(83%)\|TMPIT-like_protein(16%)	.	.	ENSG00000189077	ENSG00000189077	.	.	upstream	downstream	read_through(1)	.	.	.
CAVIN1	MDN1	-/-	-/-	17:42404042	6:89719167	3'UTR	CDS	translocation	0	0	0	0	2	low	.	.	PTRF/SDPR_family(100%)\|AAA_domain_(dynein-related_subfamily)(14%)	.	.	ENSG00000177469	ENSG00000112159	.	.	upstream	downstream	mismatches(1)	.	.	.
RPL14	RPL14	+/+	+/+	3:40462031	3:40462023	CDS	CDS	duplication/ITD	0	0	0	56	66	low	.	.	Ribosomal_protein_L14(100%)\|	.	.	ENSG00000188846	ENSG00000188846	.	.	downstream	upstream	low_entropy(1)	.	.	.
FP671120.7	COA4	-/+	-/-	21:8254720	11:73873290	exon	CDS	translocation/3'-3'	0	0	0	23	6	low	.	.	.	.	.	ENSG00000281383	ENSG00000181924	.	.	downstream	downstream	mismatches(1)	.	.	.
RCC2	LINC00486	-/.	+/.	1:17416577	2:32916555	CDS	intron	translocation	0	0	0	11	489	low	.	.	.	.	.	ENSG00000179051	ENSG00000230876	.	.	downstream	downstream	low_entropy	.	.	.
FP236383.3	FP671120.4	+/+	+/+	21:8400415	21:8217375	intron	intron	duplication	0	0	0	105	59	low	.	.	.	.	.	ENSG00000280441	ENSG00000278996	.	.	downstream	upstream	multimappers(1)	.	.	.
AL603841.1(18147),RNA5SP62(27185)	ABCC1	./-	+/+	1:163441311	16:16007816	intergenic	CDS/splice-site	translocation	0	0	0	0	8	low	.	.	\|ABC_transporter(100%),ABC_transporter_transmembrane_region(100%)	.	.	.	ENSG00000103222	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	CBLB	+/+	-/-	21:8437021	3:105853547	intron	CDS	translocation	0	0	0	11	5	low	.	.	\|CBL_proto-oncogene_N-terminal_domain_1(57%),CBL_proto-oncogene_N-terminus__EF_hand-like_domain(100%),CBL_proto-oncogene_N-terminus__SH2-like_domain(100%),Prokaryotic_RING_finger_family_4(100%)	.	.	ENSG00000280441	ENSG00000114423	.	.	downstream	downstream	multimappers(1)	.	.	.
LINC00486	RPS6	+/.	-/.	2:32916555	9:19379495	intron	CDS	translocation	0	0	0	489	1	low	.	.	.	.	.	ENSG00000230876	ENSG00000137154	.	.	downstream	downstream	low_entropy	.	.	.
SP140	SP140L	+/+	+/+	2:230310770	2:230400980	CDS	CDS	deletion/read-through	0	0	1	4	5	low	.	.	HSR_domain(100%),SAND_domain(100%)\|Bromodomain(100%),PHD-finger(4%)	.	.	ENSG00000079263	ENSG00000185404	.	.	downstream	upstream	min_support	.	.	.
LINC00486	RPS6	+/.	-/.	2:32916556	9:19379495	intron	CDS	translocation	0	0	0	489	1	low	.	.	.	.	.	ENSG00000230876	ENSG00000137154	.	.	downstream	downstream	low_entropy	.	.	.
LINC00486	TSNAX-DISC1	+/+	+/+	2:32916350	1:231694596	intron	3'UTR	translocation	0	0	0	332	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000270106	.	.	downstream	upstream	mismatches(1)	.	.	.
NIN	NIN	-/-	-/-	14:50741719	14:50752722	CDS	CDS	duplication	1	0	0	0	3	low	.	.	.	.	.	ENSG00000100503	ENSG00000100503	.	.	upstream	downstream	intragenic_exonic	.	.	.
TXNDC5	TXNDC5	-/-	-/-	6:7910682	6:7910637	CDS	CDS	deletion/read-through	0	0	0	8	12	low	.	.	\|Thioredoxin(100%)	.	.	ENSG00000239264	ENSG00000239264	.	.	upstream	downstream	read_through(1)	.	.	.
ALPK1	VIM	+/-	+/+	4:112337004	10:17234696	intron	CDS	translocation/3'-3'	0	0	0	0	22	low	.	.	\|Intermediate_filament_protein(37%)	.	.	ENSG00000073331	ENSG00000026025	.	.	upstream	upstream	mismatches(1)	.	.	.
HLA-C	LINC02573(64719),RNU6-772P(32209)	-/-	./-	6:31271075	21:20323539	CDS/splice-site	intergenic	translocation	0	0	0	74	0	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%)\|	.	.	ENSG00000204525	.	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
MAD1L1	MAD1L1	-/-	-/-	7:1957629	7:1957719	CDS/splice-site	CDS/splice-site	duplication/non-canonical_splicing	0	0	0	1	5	low	.	.	Mitotic_checkpoint_protein(72%)\|Mitotic_checkpoint_protein(32%)	.	.	ENSG00000002822	ENSG00000002822	.	.	upstream	downstream	duplicates(1),hairpin(1)	.	.	.
LINC00486	NCKAP1L	+/.	+/.	2:32916554	12:54528297	intron	CDS	translocation	0	0	0	489	7	low	.	.	.	.	.	ENSG00000230876	ENSG00000123338	.	.	downstream	upstream	low_entropy	.	.	.
RASA4	RASA4B	-/-	-/-	7:102583024	7:102483689	CDS	CDS	deletion/read-through	0	0	1	5	7	low	.	.	BTK_motif(100%),C2_domain(100%),GTPase-activator_protein_for_Ras-like_GTPase(100%),PH_domain(100%)\|	.	.	ENSG00000105808	ENSG00000170667	.	.	upstream	downstream	min_support	.	.	.
LINC00486	RPS4Y1	+/.	+/.	2:32916556	Y:2845694	intron	CDS	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000129824	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916556	21:8441982	intron	intron	translocation	0	0	0	489	563	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	downstream	upstream	low_entropy	.	.	.
KIF21A(53),AC121334.4(3961)	DPP7	./+	-/-	12:39443443	9:137110783	intergenic	CDS/splice-site	translocation	0	0	0	0	2	low	.	.	\|Serine_carboxypeptidase_S28(3%)	.	.	.	ENSG00000176978	.	.	downstream	downstream	inconsistently_clipped(1)	.	.	.
RPL14P1	CELA2B	+/+	+/-	12:62965818	1:15473161	exon	intron	translocation/5'-5'	0	0	0	20	0	low	.	.	.	.	.	ENSG00000139239	ENSG00000215704	.	.	downstream	downstream	homopolymer(1)	.	.	.
CR392039.1(887),CR392039.3(8179)	CBLB	./+	-/-	21:8988317	3:105853547	intergenic	CDS	translocation	0	0	0	11	5	low	.	.	\|CBL_proto-oncogene_N-terminal_domain_1(57%),CBL_proto-oncogene_N-terminus__EF_hand-like_domain(100%),CBL_proto-oncogene_N-terminus__SH2-like_domain(100%),Prokaryotic_RING_finger_family_4(100%)	.	.	.	ENSG00000114423	.	.	downstream	downstream	multimappers(1)	.	.	.
FP671120.4	CBLB	+/+	-/-	21:8209776	3:105853547	intron	CDS	translocation	0	1	0	15	5	low	.	.	\|CBL_proto-oncogene_N-terminal_domain_1(57%),CBL_proto-oncogene_N-terminus__EF_hand-like_domain(100%),CBL_proto-oncogene_N-terminus__SH2-like_domain(100%),Prokaryotic_RING_finger_family_4(100%)	.	.	ENSG00000278996	ENSG00000114423	.	.	downstream	downstream	min_support	.	.	.
LINC00486	NR2C2	+/.	+/.	2:32916556	3:15016225	intron	CDS	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000177463	.	.	downstream	upstream	low_entropy	.	.	.
DAP3	RBM27	+/+	+/+	1:155731417	5:146233598	exon/splice-site	CDS	translocation	0	1	0	1	3	low	.	.	Mitochondrial_ribosomal_death-associated_protein_3(68%)\|RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)	.	.	ENSG00000132676	ENSG00000091009	.	.	downstream	upstream	min_support	.	.	.
LINC00486	HDLBP	+/.	-/.	2:32916557	2:241256186	intron	CDS	inversion	0	0	0	489	0	low	.	.	.	.	.	ENSG00000230876	ENSG00000115677	.	.	downstream	downstream	duplicates	.	.	.
UQCRH	LINC00486	+/.	+/.	1:46316626	2:32916552	3'UTR	intron	translocation	0	0	0	10	489	low	.	.	.	.	.	ENSG00000173660	ENSG00000230876	.	.	upstream	downstream	low_entropy	.	.	.
EIF4G2	FP236383.3	-/-	+/+	11:10802353	21:8443422	CDS	intron	translocation	0	0	0	9	43	low	.	.	MIF4G_domain(100%)\|	.	.	ENSG00000110321	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
LINC00486	TUBB	+/.	+/.	2:32916555	6:30722594	intron	CDS	translocation	0	0	0	489	19	low	.	.	.	.	.	ENSG00000230876	ENSG00000196230	.	.	downstream	upstream	low_entropy	.	.	.
FP671120.4	5_8S_rRNA(2046),FP236383.3(121664)	+/+	./+	21:8217374	21:8258979	intron	intergenic	deletion/read-through	0	0	0	83	521	low	.	.	.	.	.	ENSG00000278996	.	.	.	downstream	upstream	mismatches(1)	.	.	.
EIF4G2	FP236383.3	-/-	+/+	11:10802353	21:8399187	CDS	intron	translocation	0	0	0	9	46	low	.	.	MIF4G_domain(100%)\|	.	.	ENSG00000110321	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
EFNB2	NIT2	-/+	+/+	13:106532839	3:100354815	intron	CDS	translocation/3'-3'	0	0	0	0	0	low	.	.	\|Carbon-nitrogen_hydrolase(5%)	.	.	ENSG00000125266	ENSG00000114021	.	.	downstream	upstream	mismatches(1)	.	.	.
MARCHF7	MARCHF7	+/+	+/+	2:159759271	2:159748819	CDS	CDS	duplication	1	0	0	1	1	low	.	.	RING-variant_domain(100%)\|RING-variant_domain(100%)	.	.	ENSG00000136536	ENSG00000136536	.	.	downstream	upstream	intragenic_exonic	.	.	.
RNF180	RNF180	+/+	+/+	5:64330406	5:64325186	CDS/splice-site	CDS/splice-site	duplication/non-canonical_splicing	0	1	0	0	2	low	.	.	Zinc_finger__C3HC4_type_(RING_finger)(100%)\|Zinc_finger__C3HC4_type_(RING_finger)(100%)	.	.	ENSG00000164197	ENSG00000164197	.	.	downstream	upstream	min_support	.	.	.
THRAP3	FP671120.6	+/+	-/+	1:36301589	21:8210603	CDS	exon	translocation/5'-5'	1	0	0	4	29	low	.	.	THRAP3/BCLAF1_family(100%)\|	.	.	ENSG00000054118	ENSG00000280800	.	.	downstream	upstream	min_support	.	.	.
POM121	POM121B	+/+	+/+	7:72941889	7:73296802	CDS	exon	deletion/read-through	0	1	0	10	2	low	.	.	POM121_family(100%)\|	.	.	ENSG00000196313	ENSG00000205578	.	.	downstream	upstream	min_support	.	.	.
LINC00486	GMCL1	+/.	+/.	2:32916605	2:69879240	intron	3'UTR	deletion	0	0	0	1	1	low	.	.	.	.	.	ENSG00000230876	ENSG00000087338	.	.	downstream	upstream	mismatches	.	.	.
AC188616.1(45954),AC226118.1(233)	ASCC2	./-	-/-	7:379126	22:29838228	intergenic	CDS	translocation	0	0	0	0	5	low	.	.	\|CUE_domain(100%)	.	.	.	ENSG00000100325	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	CANX	+/+	+/+	2:32916556	5:179705762	intron	CDS	translocation	0	0	0	489	1	low	.	.	\|Calreticulin_family(100%)	.	.	ENSG00000230876	ENSG00000127022	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
LINC00486	DBN1	+/.	-/.	2:32916571	5:177473554	intron	5'UTR	translocation	0	0	0	480	1	low	.	.	.	.	.	ENSG00000230876	ENSG00000113758	.	.	downstream	downstream	low_entropy	.	.	.
SETD5	SETD5	+/+	+/+	3:9434431	3:9434367	CDS	CDS	duplication/ITD	0	0	0	3	4	low	.	.	\|SET_domain(100%)	.	.	ENSG00000168137	ENSG00000168137	.	.	downstream	upstream	duplicates(1),hairpin(1)	.	.	.
GOLGA3	GOLGA3	-/-	-/-	12:132774153	12:132774217	intron	CDS	duplication/ITD	0	0	0	2	3	low	.	.	.	.	.	ENSG00000090615	ENSG00000090615	.	.	upstream	downstream	hairpin(1),inconsistently_clipped(1)	.	.	.
FP236383.3	PRDM12	+/+	+/-	21:8444649	9:130681622	intron	CDS	translocation/5'-5'	0	0	0	59	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000130711	.	.	downstream	downstream	mismatches(1)	.	.	.
AC069288.1	AC069288.1	-/-	-/-	7:1957629	7:1957719	3'UTR/splice-site	3'UTR/splice-site	duplication/non-canonical_splicing	0	0	0	1	5	low	.	.	.	.	.	ENSG00000286192	ENSG00000286192	.	.	upstream	downstream	duplicates(1),hairpin(1)	.	.	.
FP236383.3	RPL4	+/+	-/-	21:8393085	15:66503368	intron	CDS	translocation	0	0	0	16	35	low	.	.	\|60S_ribosomal_protein_L4_C-terminal_domain(100%),Ribosomal_protein_L4/L1_family(86%)	.	.	ENSG00000280441	ENSG00000174444	.	.	downstream	downstream	multimappers(1)	.	.	.
XKR6	HNRNPAB	-/-	+/-	8:11197932	5:178210162	intron	CDS	translocation/5'-5'	0	1	0	0	3	low	.	.	XK-related_protein(33%)\|	.	.	ENSG00000171044	ENSG00000197451	.	.	upstream	downstream	min_support	.	.	.
FP671120.3(4111),FP671120.7(332)	RPL4	./+	-/-	21:8254260	15:66503368	intergenic	CDS	translocation	0	0	0	5	35	low	.	.	\|60S_ribosomal_protein_L4_C-terminal_domain(100%),Ribosomal_protein_L4/L1_family(86%)	.	.	.	ENSG00000174444	.	.	downstream	downstream	multimappers(1)	.	.	.
MYCBP2	MYCBP2	-/-	-/-	13:77212045	13:77225544	CDS	CDS	duplication	1	0	0	7	2	low	.	.	Regulator_of_chromosome_condensation_(RCC1)_repeat(100%)\|Anaphase-promoting_complex__subunit_10_(APC10)(100%),Bacterial_SH3_domain(100%),PHR_domain_(100%),Regulator_of_chromosome_condensation_(RCC1)_repeat(62%),Ring_finger_domain(100%)	.	.	ENSG00000005810	ENSG00000005810	.	.	upstream	downstream	intragenic_exonic	.	.	.
HLA-C	AL603840.1	-/-	+/-	6:31271075	1:55602316	CDS/splice-site	intron	translocation/5'-5'	0	0	0	74	0	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%)\|	.	.	ENSG00000204525	ENSG00000234810	.	.	upstream	downstream	duplicates(1),mismatches(4)	.	.	.
KATNAL2	KATNAL2	+/+	+/+	18:46946923	18:46946057	CDS/splice-site	5'UTR/splice-site	duplication/non-canonical_splicing	1	0	0	1	0	low	.	.	\|AAA+_lid_domain(100%),ATPase_family_associated_with_various_cellular_activities_(AAA)(100%),LisH(100%)	.	.	ENSG00000167216	ENSG00000167216	.	.	downstream	upstream	min_support	.	.	.
FP236383.3	DCTN1	+/-	-/-	21:8443382	2:74369468	intron	CDS	translocation/3'-3'	0	0	0	62	4	low	.	.	\|Dynein_associated_protein_(100%)	.	.	ENSG00000280441	ENSG00000204843	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	TSNARE1	+/.	-/.	2:32916555	8:142314422	intron	CDS	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000171045	.	.	downstream	downstream	low_entropy	.	.	.
OGFR	OGFR	+/+	+/+	20:62813585	20:62813166	CDS	CDS	duplication	0	0	0	3	2	low	.	.	Opioid_growth_factor_receptor_(OGFr)_conserved_region(100%),Opioid_growth_factor_receptor_repeat(100%)\|Opioid_growth_factor_receptor_repeat(99%)	.	.	ENSG00000060491	ENSG00000060491	.	.	downstream	upstream	mismatches(1)	.	.	.
BRPF1	BRPF1	+/+	+/+	3:9743208	3:9743149	CDS	CDS	duplication/ITD	0	0	0	6	6	low	.	.	Bromodomain(100%),Enhancer_of_polycomb-like(100%),PHD-finger(100%),PHD-zinc-finger_like_domain(100%)\|PWWP_domain(100%)	.	.	ENSG00000156983	ENSG00000156983	.	.	downstream	upstream	duplicates(1),hairpin(1)	.	.	.
POM121	POM121B	+/+	+/+	7:72938681	7:73293501	CDS/splice-site	exon	deletion/read-through	1	0	0	1	1	low	.	.	POM121_family(58%)\|	.	.	ENSG00000196313	ENSG00000205578	.	.	downstream	upstream	min_support	.	.	.
FP236383.3	ASH1L	+/+	-/-	21:8445082	1:155479738	intron	CDS	translocation	0	0	0	22	4	low	.	.	\|AWS_domain(100%),BAH_domain(100%),Bromodomain(100%),SET_domain(100%)	.	.	ENSG00000280441	ENSG00000116539	.	.	downstream	downstream	multimappers(1)	.	.	.
LINC00486	CAPRIN2	+/.	-/.	2:32916555	12:30710005	intron	CDS	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000110888	.	.	downstream	downstream	low_entropy	.	.	.
FP236383.3	CPT1A	+/+	-/-	21:8443234	11:68815389	intron	CDS	translocation	0	0	1	18	4	low	.	.	\|Carnitine_O-palmitoyltransferase_N-terminus(39%),Choline/Carnitine_o-acyltransferase(100%)	.	.	ENSG00000280441	ENSG00000110090	.	.	downstream	downstream	min_support,multimappers(1)	.	.	.
5_8S_rRNA(3267),FP236383.3(120443)	CPT1A	./+	-/-	21:8260200	11:68815389	intergenic	CDS	translocation	0	0	0	22	4	low	.	.	\|Carnitine_O-palmitoyltransferase_N-terminus(39%),Choline/Carnitine_o-acyltransferase(100%)	.	.	.	ENSG00000110090	.	.	downstream	downstream	multimappers(1)	.	.	.
TATDN2	AC022384.1	+/+	+/+	3:10260443	3:10260405	CDS	CDS	duplication	0	0	0	1	1	low	.	.	.	.	.	ENSG00000157014	ENSG00000272410	.	.	downstream	upstream	hairpin(1)	.	.	.
MCM3AP	FP236383.4	-/-	-/+	21:46277656	21:8393987	CDS	exon	inversion/5'-5'	0	0	0	3	34	low	.	.	Nucleoporin_homology_of_Germinal-centre_associated_nuclear_protein(100%)\|	.	.	ENSG00000160294	ENSG00000280614	.	.	upstream	upstream	multimappers(1)	.	.	.
LINC01710(3757),LYPLAL1-DT(60552)	HLA-DPA1	./+	-/-	1:218922471	6:33069885	intergenic	CDS/splice-site	translocation	0	0	0	0	50	low	.	.	\|Class_II_histocompatibility_antigen__alpha_domain(100%),Immunoglobulin_C1-set_domain(100%)	.	.	.	ENSG00000231389	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	TNPO3	+/.	-/.	2:32916555	7:128974976	intron	intron	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000064419	.	.	downstream	downstream	low_entropy	.	.	.
HLA-A	HLA-J	+/+	+/+	6:29944616	6:30009145	CDS/splice-site	exon/splice-site	deletion/read-through	1	0	0	33	1	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%),Immunoglobulin_C1-set_domain(100%),MHC_I_C-terminus(4%)\|	.	.	ENSG00000206503	ENSG00000204622	.	.	downstream	upstream	min_support	.	.	.
FP236383.3	NUMA1	+/+	-/-	21:8398303	11:72004093	intron	CDS	translocation	0	0	0	9	2	low	.	.	.	.	.	ENSG00000280441	ENSG00000137497	.	.	downstream	downstream	multimappers(1)	.	.	.
FP236383.3	CBLB	+/+	-/-	21:8392811	3:105853547	intron	CDS	translocation	0	0	0	18	5	low	.	.	\|CBL_proto-oncogene_N-terminal_domain_1(57%),CBL_proto-oncogene_N-terminus__EF_hand-like_domain(100%),CBL_proto-oncogene_N-terminus__SH2-like_domain(100%),Prokaryotic_RING_finger_family_4(100%)	.	.	ENSG00000280441	ENSG00000114423	.	.	downstream	downstream	multimappers(1)	.	.	.
FP236383.3	TAF4	+/+	-/-	21:8398856	20:61997654	intron	CDS	translocation	0	0	0	23	4	low	.	.	\|Transcription_initiation_factor_TFIID_component_TAF4_family(34%)	.	.	ENSG00000280441	ENSG00000130699	.	.	downstream	downstream	multimappers(1)	.	.	.
TATDN2	TATDN2	+/+	+/+	3:10260443	3:10260405	CDS	CDS	duplication/ITD	0	0	0	1	1	low	.	.	\|TatD_related_DNase(100%)	.	.	ENSG00000157014	ENSG00000157014	.	.	downstream	upstream	hairpin(1)	.	.	.
SETD3	SPECC1L	-/+	+/+	14:99420983	22:24302262	intron	CDS	translocation/3'-3'	0	0	0	0	2	low	.	.	\|Calponin_homology_(CH)_domain(100%)	.	.	ENSG00000183576	ENSG00000100014	.	.	downstream	upstream	homopolymer(1)	.	.	.
LINC00486	5_8S_rRNA(2018),FP236383.3(121692)	+/.	./.	2:32916556	21:8258951	intron	intergenic	translocation	0	0	0	489	511	low	.	.	.	.	.	ENSG00000230876	.	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	TPM3	+/+	-/-	2:32916333	1:154183073	intron	CDS	translocation	0	0	0	332	21	low	.	.	\|Tropomyosin(89%)	.	.	ENSG00000230876	ENSG00000143549	.	.	downstream	downstream	homopolymer(1)	.	.	.
LINC00486	5_8S_rRNA(2008),FP236383.3(121702)	+/.	./.	2:32916556	21:8258941	intron	intergenic	translocation	0	0	0	489	511	low	.	.	.	.	.	ENSG00000230876	.	.	.	downstream	upstream	mismatches	.	.	.
SGSH	DHX34	-/+	+/+	17:80212124	19:47353002	CDS	5'UTR	translocation/3'-3'	0	0	0	0	17	low	.	.	\|Helicase_associated_domain_(HA2)(100%),Helicase_conserved_C-terminal_domain(100%),Oligonucleotide/oligosaccharide-binding_(OB)-fold(100%)	.	.	ENSG00000181523	ENSG00000134815	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
FP236383.3	RPS2P5	+/-	+/+	21:8399966	12:118246169	intron	exon	translocation/3'-3'	0	0	0	5	21	low	.	.	.	.	.	ENSG00000280441	ENSG00000240342	.	.	upstream	upstream	multimappers(1)	.	.	.
LINC00486	TPM3	+/+	-/-	2:32916554	1:154183073	intron	CDS	translocation	0	0	0	489	21	low	.	.	\|Tropomyosin(89%)	.	.	ENSG00000230876	ENSG00000143549	.	.	downstream	downstream	homopolymer(1)	.	.	.
HMGB1	THSD4	-/-	+/-	13:30461331	15:71164746	3'UTR	intron	translocation/5'-5'	0	0	0	4	0	low	.	.	HMG-box_domain(100%),HMG_(high_mobility_group)_box(100%)\|	.	.	ENSG00000189403	ENSG00000187720	.	.	upstream	downstream	homopolymer(1)	.	.	.
SLC24A3	FP671120.4	+/-	+/+	20:19276931	21:8216034	intron	intron	translocation/3'-3'	0	0	0	0	47	low	.	.	.	.	.	ENSG00000185052	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00486	DHX30	+/.	+/.	2:32916556	3:47847908	intron	CDS	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000132153	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	GCN1	+/.	-/.	2:32916555	12:120144348	intron	CDS	translocation	0	0	0	489	3	low	.	.	.	.	.	ENSG00000230876	ENSG00000089154	.	.	downstream	downstream	low_entropy	.	.	.
TLK1	TLK1	-/-	-/-	2:171022087	2:171022100	intron	intron	duplication/ITD	0	0	0	1	0	low	.	.	\|Protein_kinase_domain(100%)	.	.	ENSG00000198586	ENSG00000198586	.	.	upstream	downstream	hairpin(1),merge_adjacent	.	.	.
LINC00486	GCN1	+/.	-/.	2:32916556	12:120144348	intron	CDS	translocation	0	0	0	489	3	low	.	.	.	.	.	ENSG00000230876	ENSG00000089154	.	.	downstream	downstream	low_entropy	.	.	.
LINC00486	ZBTB9	+/.	+/.	2:32916555	6:33456535	intron	3'UTR	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000213588	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	ZBTB9	+/.	+/.	2:32916556	6:33456535	intron	3'UTR	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000213588	.	.	downstream	upstream	low_entropy	.	.	.
SRSF6	SRSF6	+/+	+/+	20:43461012	20:43460971	CDS	CDS	duplication/ITD	0	0	0	6	6	low	.	.	RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)\|	.	.	ENSG00000124193	ENSG00000124193	.	.	downstream	upstream	duplicates(1),hairpin(1)	.	.	.
FP671120.4	FP236383.3	+/+	+/+	21:8214650	21:8441913	intron	intron	deletion/read-through	0	0	0	84	342	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(7),multimappers(9)	.	.	.
RPL29	RPL29P24	-/-	-/-	3:51993992	12:120523003	CDS	exon	translocation	0	0	0	31	0	low	.	.	Ribosomal_L29e_protein_family(100%)\|	.	.	ENSG00000162244	ENSG00000241030	.	.	upstream	downstream	multimappers(1)	.	.	.
XPC	5_8S_rRNA(3437),FP236383.3(120273)	-/-	./-	3:14158337	21:8260370	CDS	intergenic	translocation	0	0	0	5	62	low	.	.	Rad4_transglutaminase-like_domain(12%)\|	.	.	ENSG00000154767	.	.	.	upstream	downstream	multimappers(1)	.	.	.
SLC25A6	CSF2RA(8953),IL3RA(17282)	-/-	./-	X:1386740	X:1319334	CDS	intergenic	deletion/read-through	1	0	0	30	0	low	.	.	Mitochondrial_carrier_protein(84%)\|	.	.	ENSG00000169100	.	.	.	upstream	downstream	min_support	.	.	.
FP671120.7	WNK1	-/+	+/+	21:8255027	12:753796	exon	CDS	translocation/3'-3'	0	0	0	13	0	low	.	.	\|Oxidative-stress-responsive_kinase_1_C-terminal_domain(100%),Protein_kinase_domain(100%)	.	.	ENSG00000281383	ENSG00000060237	.	.	downstream	upstream	multimappers(1)	.	.	.
HLA-A	LINC02435	+/+	+/-	6:29943541	4:123516534	CDS/splice-site	intron	translocation/5'-5'	0	0	0	8	0	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%)\|	.	.	ENSG00000206503	ENSG00000251526	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	ANKRD36B	+/+	-/-	2:32916557	2:97511972	intron	CDS	inversion	0	0	0	489	10	low	.	.	\|CCDC144C_protein_coiled-coil_region(95%)	.	.	ENSG00000230876	ENSG00000196912	.	.	downstream	downstream	inconsistently_clipped(1)	.	.	.
LINC00486	ANKRD36	+/+	+/+	2:32916557	2:97245237	intron	CDS	deletion	0	0	0	489	9	low	.	.	\|CCDC144C_protein_coiled-coil_region(95%)	.	.	ENSG00000230876	ENSG00000135976	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
NCOA2	SEPTIN9	-/-	+/+	8:70156143	17:77472117	CDS	intron	translocation	1	0	0	2	0	low	.	.	Domain_of_unknown_function_(DUF4927)(12%),PAS_domain(100%),PAS_fold(100%),Steroid_receptor_coactivator(100%),Unstructured_region_on_nuclear_receptor_coactivator_protein(100%)\|Septin(100%)	.	.	ENSG00000140396	ENSG00000184640	.	.	upstream	upstream	min_support	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916555	21:8441979	intron	intron	translocation	0	0	0	489	567	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	CNNM4	+/.	+/.	2:32916556	2:96761155	intron	CDS	deletion	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000158158	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	CANX	+/.	+/.	2:32916553	5:179708336	intron	CDS	translocation	0	0	0	489	21	low	.	.	.	.	.	ENSG00000230876	ENSG00000127022	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	KIF18A	+/.	-/.	2:32916547	11:28069082	intron	intron	translocation	0	0	0	489	13	low	.	.	.	.	.	ENSG00000230876	ENSG00000121621	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	PI4K2B	+/.	+/.	2:32916404	4:25234137	intron	5'UTR	translocation	0	0	0	50	14	low	.	.	.	.	.	ENSG00000230876	ENSG00000038210	.	.	downstream	upstream	mismatches	.	.	.
RPL14	RPL14	+/+	+/+	3:40462061	3:40462047	CDS	CDS	duplication/ITD	0	0	0	66	53	low	.	.	Ribosomal_protein_L14(100%)\|	.	.	ENSG00000188846	ENSG00000188846	.	.	downstream	upstream	duplicates(2),hairpin(9),low_entropy(2)	.	.	.
LINC00486	PHRF1	+/.	+/.	2:32916577	11:607882	intron	CDS	translocation	0	0	0	480	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000070047	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	CANX	+/.	+/.	2:32916559	5:179708336	intron	CDS	translocation	0	0	0	489	21	low	.	.	.	.	.	ENSG00000230876	ENSG00000127022	.	.	downstream	upstream	mismatches	.	.	.
DONSON	AP000311.1	-/-	-/-	21:33579350	21:33586181	CDS/splice-site	CDS/splice-site	duplication	1	0	0	1	0	low	.	.	.	.	.	ENSG00000159147	ENSG00000249209	.	.	upstream	downstream	min_support	.	.	.
LINC00486	SERINC1	+/+	-/-	2:32916550	6:122456598	intron	CDS	translocation	0	0	0	489	15	low	.	.	\|Serine_incorporator_(Serinc)(84%)	.	.	ENSG00000230876	ENSG00000111897	.	.	downstream	downstream	homopolymer(1)	.	.	.
RPL14	RPL14	+/+	+/+	3:40462029	3:40462015	CDS	CDS	duplication/ITD	0	0	0	56	60	low	.	.	Ribosomal_protein_L14(100%)\|	.	.	ENSG00000188846	ENSG00000188846	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
PACRG	PARK7	+/+	+/+	6:163148986	1:7965336	intron	CDS	translocation	0	0	0	0	19	low	.	.	Parkin_co-regulated_protein(71%)\|DJ-1/PfpI_family(82%)	.	.	ENSG00000112530	ENSG00000116288	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916416	21:8443322	intron	intron	translocation/3'-3'	0	0	0	219	41	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	upstream	upstream	duplicates	.	.	.
LINC00486	MKI67	+/.	-/.	2:32916273	10:128102700	intron	CDS	translocation/3'-3'	0	0	0	332	11	low	.	.	.	.	.	ENSG00000230876	ENSG00000148773	.	.	upstream	downstream	mismatches	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916416	21:8260284	intron	intergenic	translocation/3'-3'	0	0	0	219	68	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	upstream	upstream	mismatches	.	.	.
AC091959.1	AC091959.1	+/+	+/+	5:146230676	5:146229717	CDS	CDS/splice-site	duplication	1	0	0	1	1	low	.	.	PWI_domain(100%)\|RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%),Zinc_finger_C-x8-C-x5-C-x3-H_type_(and_similar)(100%)	.	.	ENSG00000275740	ENSG00000275740	.	.	downstream	upstream	intragenic_exonic	.	.	.
HNRNPA1P48	HNRNPA1P7	+/+	-/-	16:51646508	18:32412842	CDS	exon	translocation	0	0	0	4	5	low	.	.	RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)\|	.	.	ENSG00000224578	ENSG00000215492	.	.	downstream	downstream	multimappers(1)	.	.	.
5_8S_rRNA(1080),AC018688.1(59445)	H2AC19	./-	+/+	20:30486156	1:149851143	intergenic	CDS	translocation	0	0	0	0	72	low	.	.	\|C-terminus_of_histone_H2A(100%),Core_histone_H2A/H2B/H3/H4(93%)	.	.	.	ENSG00000272196	.	.	upstream	upstream	mismatches(1)	.	.	.
COA4	COA4	-/-	-/-	11:73873058	11:73873136	3'UTR	CDS	duplication/ITD	0	0	0	1	2	low	.	.	.	.	.	ENSG00000181924	ENSG00000181924	.	.	upstream	downstream	duplicates(1),hairpin(1)	.	.	.
FP671120.4	FP236383.3	+/+	+/+	21:8217376	21:8400136	intron	intron	deletion/read-through	0	0	0	83	30	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	SERINC1	+/+	-/-	2:32916548	6:122456598	intron	CDS	translocation	0	0	0	489	15	low	.	.	\|Serine_incorporator_(Serinc)(84%)	.	.	ENSG00000230876	ENSG00000111897	.	.	downstream	downstream	homopolymer(1)	.	.	.
PRRC2C	PRRC2C	+/+	+/+	1:171557460	1:171557369	CDS	CDS	duplication/ITD	0	0	0	10	10	low	.	.	BAT2_N-terminus(100%)\|	.	.	ENSG00000117523	ENSG00000117523	.	.	downstream	upstream	hairpin(1)	.	.	.
AC115100.1	CCT7	+/-	+/+	18:30378094	2:73244034	intron	CDS	translocation/3'-3'	0	0	0	0	0	low	.	.	\|TCP-1/cpn60_chaperonin_family(76%)	.	.	ENSG00000286605	ENSG00000135624	.	.	upstream	upstream	mismatches(1)	.	.	.
ACTG1	AL080243.1	-/-	-/-	17:81512006	22:41075049	CDS	exon	translocation	0	0	0	53	0	low	.	.	Actin(22%)\|	.	.	ENSG00000184009	ENSG00000213857	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00273(875),RNA5-8SP2(2048)	COA4	./+	-/-	16:34160911	11:73873290	intergenic	CDS	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000181924	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	HSPA8	+/.	-/.	2:32916556	11:123058713	intron	CDS	translocation	0	0	0	489	26	low	.	.	.	.	.	ENSG00000230876	ENSG00000109971	.	.	downstream	downstream	low_entropy	.	.	.
ZNF322P1	ZNF322P1	-/-	-/-	9:97198715	9:97198798	exon	exon	duplication/ITD	0	1	0	1	1	low	.	.	.	.	.	ENSG00000188801	ENSG00000188801	.	.	upstream	downstream	duplicates(1),intragenic_exonic	.	.	.
LINC00486	GGT1	+/.	+/.	2:32916559	22:24620997	intron	CDS	translocation	0	0	0	489	1	low	.	.	.	.	.	ENSG00000230876	ENSG00000100031	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	RASAL3	+/.	-/.	2:32916556	19:15456595	intron	CDS	translocation	0	0	0	489	4	low	.	.	.	.	.	ENSG00000230876	ENSG00000105122	.	.	downstream	downstream	low_entropy	.	.	.
TSPEAR	FILIP1L	-/-	-/+	21:44505556	3:99850387	intron	CDS	translocation/5'-5'	0	1	0	0	1	low	.	.	EPTP_domain(84%)\|	.	.	ENSG00000175894	ENSG00000168386	.	.	upstream	upstream	min_support	.	.	.
LINC00486	5_8S_rRNA(1985),FP236383.3(121725)	+/.	./.	2:32916556	21:8258918	intron	intergenic	translocation	0	0	0	489	386	low	.	.	.	.	.	ENSG00000230876	.	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916556	21:8441953	intron	intron	translocation	0	0	0	489	418	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916558	21:8401714	intron	intron	translocation	0	0	0	489	26	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	downstream	upstream	mismatches	.	.	.
FP671120.4	FLVCR1	+/+	+/+	21:8215754	1:212859132	intron	CDS	translocation	0	1	0	24	9	low	.	.	\|Major_Facilitator_Superfamily(70%)	.	.	ENSG00000278996	ENSG00000162769	.	.	downstream	upstream	min_support	.	.	.
5_8S_rRNA(3050),FP236383.3(120660)	FLVCR1	./+	+/+	21:8259983	1:212859132	intergenic	CDS	translocation	0	0	0	21	9	low	.	.	\|Major_Facilitator_Superfamily(70%)	.	.	.	ENSG00000162769	.	.	downstream	upstream	multimappers(1)	.	.	.
FP236383.3	FLVCR1	+/+	+/+	21:8398788	1:212859132	intron	CDS	translocation	0	0	0	25	9	low	.	.	\|Major_Facilitator_Superfamily(70%)	.	.	ENSG00000280441	ENSG00000162769	.	.	downstream	upstream	multimappers(1)	.	.	.
ILKAP	ILKAP	-/-	-/-	2:238182065	2:238185287	CDS/splice-site	CDS/splice-site	duplication/non-canonical_splicing	1	0	0	2	0	low	.	.	Protein_phosphatase_2C(61%)\|Protein_phosphatase_2C(88%)	.	.	ENSG00000132323	ENSG00000132323	.	.	upstream	downstream	min_support	.	.	.
RCSD1	LINC00486	+/.	+/.	1:167697405	2:32916556	CDS	intron	translocation	0	0	0	6	489	low	.	.	.	.	.	ENSG00000198771	ENSG00000230876	.	.	upstream	downstream	low_entropy	.	.	.
TACC3	AC019257.8	+/+	+/+	4:1744722	8:1836682	CDS	intron	translocation	0	0	0	4	0	low	.	.	Transforming_acidic_coiled-coil-containing_protein_(TACC)__C-terminal(73%)\|	.	.	ENSG00000013810	ENSG00000283239	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP671120.4	+/+	+/+	21:8217379	21:8217365	intron	intron	duplication/ITD	0	0	0	83	59	low	.	.	.	.	.	ENSG00000278996	ENSG00000278996	.	.	downstream	upstream	low_entropy(1),merge_adjacent	.	.	.
FP671120.4	PRPS1L1(59074),HDAC9(29)	+/+	./+	21:8217379	7:18086920	intron	intergenic	translocation	0	0	0	83	0	low	.	.	.	.	.	ENSG00000278996	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	GPAT2	+/.	-/.	2:32916555	2:96032353	intron	CDS	inversion	0	0	0	489	6	low	.	.	.	.	.	ENSG00000230876	ENSG00000186281	.	.	downstream	downstream	low_entropy	.	.	.
LINC00486	VIM	+/.	+/.	2:32916555	10:17229847	intron	CDS	translocation	0	0	0	489	9	low	.	.	.	.	.	ENSG00000230876	ENSG00000026025	.	.	downstream	upstream	low_entropy	.	.	.
CDK11B	CDK11A	-/-	-/-	1:1645127	1:1716374	CDS/splice-site	CDS	duplication	1	0	0	2	0	low	.	.	\|Protein_kinase_domain(100%)	.	.	ENSG00000248333	ENSG00000008128	.	.	upstream	downstream	min_support	.	.	.
GBF1	FP671120.7	+/+	-/+	10:102369270	21:8254941	CDS	exon	translocation/5'-5'	1	0	0	4	17	low	.	.	Guanine_nucleotide_exchange_factor_in_Golgi_transport_N-terminal(100%),Sec7_domain(100%)\|	.	.	ENSG00000107862	ENSG00000281383	.	.	downstream	upstream	min_support	.	.	.
C19orf73	5_8S_rRNA(3025),FP236383.3(120685)	-/-	./+	19:49119098	21:8259958	5'UTR	intergenic	translocation	0	0	0	0	21	low	.	.	.	.	.	ENSG00000221916	.	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
GMPPB	LINC00486	-/-	+/-	3:49718810	2:32916407	3'UTR	intron	translocation/5'-5'	0	0	0	6	50	low	.	.	Bacterial_transferase_hexapeptide_(six_repeats)(100%),Nucleotidyl_transferase(100%)\|	.	.	ENSG00000173540	ENSG00000230876	.	.	upstream	downstream	mismatches	.	.	.
GMPPB	LINC00486	-/-	+/-	3:49718810	2:32916400	3'UTR	intron	translocation/5'-5'	0	0	0	6	53	low	.	.	Bacterial_transferase_hexapeptide_(six_repeats)(100%),Nucleotidyl_transferase(100%)\|	.	.	ENSG00000173540	ENSG00000230876	.	.	upstream	downstream	mismatches	.	.	.
GFPT1	GFPT1	-/-	-/-	2:69363545	2:69374113	CDS/splice-site	CDS/splice-site	duplication/non-canonical_splicing	1	0	0	3	1	low	.	.	Glutamine_amidotransferase_domain(30%)\|Glutamine_amidotransferase_domain(100%),SIS_domain(100%)	.	.	ENSG00000198380	ENSG00000198380	.	.	upstream	downstream	min_support	.	.	.
DDT	AP000350.6(19452),AP000350.2(380)	-/-	./-	22:23974307	22:23926520	CDS/splice-site	intergenic	deletion/read-through	0	1	0	2	1	low	.	.	Macrophage_migration_inhibitory_factor_(MIF)(28%)\|	.	.	ENSG00000099977	.	.	.	upstream	downstream	min_support	.	.	.
C19orf73	FP236383.3	-/-	+/+	19:49119098	21:8398763	5'UTR	intron	translocation	0	0	0	0	22	low	.	.	.	.	.	ENSG00000221916	ENSG00000280441	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
FP671120.4	FP236383.3	+/+	+/+	21:8216051	21:8260278	intron	intergenic	deletion/read-through	0	0	0	72	57	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	duplicates(1)	.	.	.
USP7	CARD18	-/-	-/+	16:8923203	11:105371069	intron	intron	translocation/5'-5'	0	0	0	9	0	low	.	.	MATH_domain(43%)\|	.	.	ENSG00000187555	ENSG00000255501	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	FP671120.4	+/+	+/+	21:8442033	21:8214773	intron	intron	duplication	2	0	0	563	165	low	.	.	.	.	.	ENSG00000280441	ENSG00000278996	.	.	downstream	upstream	low_entropy(1),relative_support	.	.	.
AC063979.1	VARS1	-/-	-/-	5:72719617	6:31782621	intron	CDS	translocation	0	0	0	0	4	low	.	.	\|Anticodon-binding_domain_of_tRNA_ligase(100%),tRNA_synthetases_class_I_(I__L__M_and_V)(48%)	.	.	ENSG00000251613	ENSG00000204394	.	.	upstream	downstream	mismatches(1)	.	.	.
NCOR1	NCOR1	-/-	-/-	17:16137379	17:16146456	CDS	CDS	duplication	1	0	0	3	1	low	.	.	G-protein_pathway_suppressor_2-interacting_domain(100%)\|Myb-like_DNA-binding_domain(100%)	.	.	ENSG00000141027	ENSG00000141027	.	.	upstream	downstream	intragenic_exonic	.	.	.
LINC00486	MKI67	+/.	-/.	2:32916258	10:128102700	intron	CDS	translocation/3'-3'	0	0	0	332	11	low	.	.	.	.	.	ENSG00000230876	ENSG00000148773	.	.	upstream	downstream	mismatches	.	.	.
LINC00486	MKI67	+/.	-/.	2:32916269	10:128102700	intron	CDS	translocation/3'-3'	0	0	0	332	11	low	.	.	.	.	.	ENSG00000230876	ENSG00000148773	.	.	upstream	downstream	mismatches	.	.	.
LINC00486	MKI67	+/.	-/.	2:32916253	10:128102700	intron	CDS	translocation/3'-3'	0	0	0	332	11	low	.	.	.	.	.	ENSG00000230876	ENSG00000148773	.	.	upstream	downstream	mismatches	.	.	.
LINC02436	SNX25	+/+	+/+	4:185051194	4:185320810	exon	CDS	deletion/read-through	0	0	0	0	2	low	.	.	\|PX_domain(100%),Regulator_of_G_protein_signaling_domain(79%),Sorting_nexin_C_terminal(100%)	.	.	ENSG00000250754	ENSG00000109762	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	LGALS9	+/.	+/.	2:32916556	17:27640697	intron	CDS	translocation	0	0	0	489	5	low	.	.	.	.	.	ENSG00000230876	ENSG00000168961	.	.	downstream	upstream	low_entropy	.	.	.
TADA3	PDE3A	-/-	+/+	3:9789933	12:20551425	CDS	intron	translocation	1	0	0	9	10	low	.	.	\|3'5'-cyclic_nucleotide_phosphodiesterase(100%)	.	.	ENSG00000171148	ENSG00000172572	.	.	upstream	upstream	min_support	.	.	.
VPS51	FP671120.4	+/+	+/+	11:65110721	21:8209971	CDS	intron	translocation	1	0	0	6	13	low	.	.	Vps51/Vps67(100%)\|	.	.	ENSG00000149823	ENSG00000278996	.	.	downstream	upstream	min_support	.	.	.
IGBP1P5(61694),AC007106.2(269915)	CCT7	./+	+/+	4:27647838	2:73244034	intergenic	CDS	translocation	0	0	0	0	0	low	.	.	\|TCP-1/cpn60_chaperonin_family(76%)	.	.	.	ENSG00000135624	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	RPS4Y1	+/.	+/.	2:32916555	Y:2845694	intron	CDS	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000129824	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	CAPRIN2	+/.	-/.	2:32916556	12:30710005	intron	CDS	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000110888	.	.	downstream	downstream	low_entropy	.	.	.
LILRB1	LILRB1	+/+	+/+	19:54635570	19:54634651	CDS	CDS	duplication	1	0	0	2	3	low	.	.	Immunoglobulin_domain(100%)\|	.	.	ENSG00000104972	ENSG00000104972	.	.	downstream	upstream	intragenic_exonic	.	.	.
FP671120.4	FP671120.4	+/+	+/+	21:8216923	21:8216861	intron	intron	duplication/ITD	0	0	0	31	36	low	.	.	.	.	.	ENSG00000278996	ENSG00000278996	.	.	downstream	upstream	duplicates(1),hairpin(1)	.	.	.
YTHDF2	LINC00486	+/.	+/.	1:28742889	2:32916555	CDS	intron	translocation	0	0	0	3	489	low	.	.	.	.	.	ENSG00000198492	ENSG00000230876	.	.	upstream	downstream	low_entropy	.	.	.
LINC00486	PRKRIP1	+/.	+/.	2:32916555	7:102396444	intron	CDS	translocation	0	0	0	489	8	low	.	.	.	.	.	ENSG00000230876	ENSG00000128563	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916411	21:8399101	intron	intron	translocation/3'-3'	0	0	0	219	73	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	upstream	upstream	mismatches	.	.	.
LINC00486	DST	+/.	-/.	2:32916511	6:56555783	intron	CDS	translocation	0	0	0	493	3	low	.	.	.	.	.	ENSG00000230876	ENSG00000151914	.	.	downstream	downstream	mismatches	.	.	.
HMGB1	THSD4-AS1	-/-	-/-	13:30461331	15:71164746	3'UTR	intron	translocation	0	0	0	4	0	low	.	.	HMG-box_domain(100%),HMG_(high_mobility_group)_box(100%)\|	.	.	ENSG00000189403	ENSG00000259964	.	.	upstream	downstream	homopolymer(1)	.	.	.
XRN2	XRN2	+/+	+/+	20:21303473	20:21326279	CDS/splice-site	CDS/splice-site	deletion/read-through	0	0	0	5	4	low	.	.	XRN_5'-3'_exonuclease_N-terminus(9%)\|XRN_5'-3'_exonuclease_N-terminus(90%),Xrn1_helical_domain(100%)	.	.	ENSG00000088930	ENSG00000088930	.	.	downstream	upstream	read_through(1)	.	.	.
LINC00486	5_8S_rRNA(2005),FP236383.3(121705)	+/.	./.	2:32916556	21:8258938	intron	intergenic	translocation	0	0	0	489	466	low	.	.	.	.	.	ENSG00000230876	.	.	.	downstream	upstream	low_entropy	.	.	.
HMGB1	TPST2	-/-	-/+	13:30461331	22:26561186	3'UTR	intron	translocation/5'-5'	0	0	0	4	0	low	.	.	HMG-box_domain(100%),HMG_(high_mobility_group)_box(100%)\|	.	.	ENSG00000189403	ENSG00000128294	.	.	upstream	upstream	homopolymer(1)	.	.	.
LINC00486	FAM149B1	+/.	+/.	2:32916555	10:73177859	intron	CDS	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000138286	.	.	downstream	upstream	low_entropy	.	.	.
RBMX	RBMXP4	-/-	-/-	X:136877987	4:109347148	CDS	exon	translocation	1	0	0	10	0	low	.	.	RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(97%)\|	.	.	ENSG00000147274	ENSG00000249465	.	.	upstream	downstream	min_support	.	.	.
FP671120.7	FP236383.3	-/+	+/+	21:8254982	21:8441810	exon	intron	deletion/read-through/3'-3'	0	0	0	17	35	low	.	.	.	.	.	ENSG00000281383	ENSG00000280441	.	.	downstream	upstream	multimappers(1)	.	.	.
PTGIS(61843),B4GALT5(2965)	SLC9A8	./+	+/+	20:49629980	20:49849587	intergenic	CDS	deletion/read-through	0	0	0	0	4	low	.	.	\|Sodium/hydrogen_exchanger_family(81%)	.	.	.	ENSG00000197818	.	.	downstream	upstream	low_entropy(1)	.	.	.
LINC00486	EIF3L	+/.	+/.	2:32916555	22:37877865	intron	CDS	translocation	0	0	0	489	8	low	.	.	.	.	.	ENSG00000230876	ENSG00000100129	.	.	downstream	upstream	low_entropy	.	.	.
MAB21L4(6373),CROCC2(3068)	HLA-B	./-	-/-	2:240903262	6:31356470	intergenic	exon	translocation	0	0	0	0	4	low	.	.	\|Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(49%),Immunoglobulin_C1-set_domain(100%),MHC_I_C-terminus(100%)	.	.	.	ENSG00000234745	.	.	upstream	downstream	homopolymer(2)	.	.	.
ECPAS	ECPAS	-/-	-/-	9:111440372	9:111444494	CDS/splice-site	CDS/splice-site	duplication/non-canonical_splicing	0	1	0	1	1	low	.	.	Proteasome_stabiliser(33%)\|Proteasome_stabiliser(91%),Vacuolar_14_Fab1-binding_region(100%)	.	.	ENSG00000136813	ENSG00000136813	.	.	upstream	downstream	min_support	.	.	.
FP671120.4	FP236383.3	+/+	+/+	21:8260342	21:8260297	intergenic	intergenic	duplication	0	0	0	60	68	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	duplicates(1)	.	.	.
GMPPB	LINC00486	-/-	+/-	3:49718810	2:32916406	3'UTR	intron	translocation/5'-5'	0	0	0	6	50	low	.	.	Bacterial_transferase_hexapeptide_(six_repeats)(100%),Nucleotidyl_transferase(100%)\|	.	.	ENSG00000173540	ENSG00000230876	.	.	upstream	downstream	mismatches	.	.	.
FP236383.3	FP236383.3	+/+	+/+	21:8399147	21:8399102	intron	intron	duplication/ITD	0	0	0	73	73	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	downstream	upstream	low_entropy(2)	.	.	.
LINC00486	AGRN	+/+	+/+	2:32916458	1:1045915	intron	intron	translocation	0	0	0	219	1	low	.	.	\|EGF-like_domain(100%),Kazal-type_serine_protease_inhibitor_domain(10%),Laminin_G_domain(100%),SEA_domain(100%)	.	.	ENSG00000230876	ENSG00000188157	.	.	downstream	upstream	homopolymer(1)	.	.	.
FP671120.4	FP671120.4	+/+	+/+	21:8260342	21:8260297	intergenic	intergenic	duplication/ITD	0	0	0	60	68	low	.	.	.	.	.	ENSG00000278996	ENSG00000278996	.	.	downstream	upstream	low_entropy(1)	.	.	.
NPIPB5	LINC00486	+/+	+/-	16:22532366	2:32916555	CDS	intron	translocation/5'-5'	0	0	0	5	489	low	.	.	Nuclear_pore_complex_interacting_protein_(NPIP)(68%)\|	.	.	ENSG00000243716	ENSG00000230876	.	.	downstream	downstream	low_entropy	.	.	.
ABHD12	ABHD12	-/-	-/-	20:25390743	20:25390751	5'UTR	5'UTR	duplication/ITD	0	0	0	0	1	low	.	.	\|Serine_aminopeptidase__S33(100%)	.	.	ENSG00000100997	ENSG00000100997	.	.	upstream	downstream	duplicates(1),hairpin(1)	.	.	.
FP671120.4	FP671120.4	+/+	+/+	21:8217379	21:8217371	intron	intron	duplication/ITD	0	0	0	83	59	low	.	.	.	.	.	ENSG00000278996	ENSG00000278996	.	.	downstream	upstream	duplicates(3),hairpin(3),inconsistently_clipped(1),low_entropy(3),merge_adjacent	.	.	.
PTENP1	PTEN	-/-	+/+	9:33676160	10:87864454	exon	5'UTR	translocation	0	0	0	0	7	low	.	.	\|C2_domain_of_PTEN_tumour-suppressor_protein(100%),Dual_specificity_phosphatase__catalytic_domain(100%)	.	.	ENSG00000237984	ENSG00000171862	.	.	upstream	upstream	multimappers(1)	.	.	.
NCOR2	NCOR2	-/-	-/-	12:124340185	12:124340193	CDS	CDS	duplication/ITD	0	0	0	0	2	low	.	.	G-protein_pathway_suppressor_2-interacting_domain(100%),Myb-like_DNA-binding_domain(100%)\|	.	.	ENSG00000196498	ENSG00000196498	.	.	upstream	downstream	hairpin(1)	.	.	.
SLC45A3	BRAF	-/-	-/-	1:205680394	7:140794467	5'UTR/splice-site	CDS/splice-site	translocation	0	1	0	0	7	low	.	.	\|Protein_kinase_domain(100%)	.	.	ENSG00000158715	ENSG00000157764	.	.	upstream	downstream	min_support	.	.	.
AL671883.2	FP671120.6	+/+	-/-	6:31356896	21:8211281	exon	exon	translocation	0	0	0	21	16	low	.	.	.	.	.	ENSG00000271581	ENSG00000280800	.	.	downstream	downstream	mismatches	.	.	.
PDE3B	FP671120.3(3892),FP671120.7(551)	+/+	./+	11:14645021	21:8254041	CDS	intergenic	translocation	0	0	0	5	17	low	.	.	.	.	.	ENSG00000152270	.	.	.	downstream	upstream	multimappers(1)	.	.	.
FP236383.3	FP236383.3	+/+	+/+	21:8442012	21:8397792	intron	intron	duplication	1	0	0	567	127	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	downstream	upstream	min_support	.	.	.
TUBA1B	TUBA1B	-/-	-/-	12:49127875	12:49129258	3'UTR	CDS	duplication	0	0	0	2	0	low	.	.	Tubulin/FtsZ_family__GTPase_domain(100%),Tubulin_C-terminal_domain(100%)\|Tubulin/FtsZ_family__GTPase_domain(44%),Tubulin_C-terminal_domain(100%)	.	.	ENSG00000123416	ENSG00000123416	.	.	upstream	downstream	mismatches(1)	.	.	.
IGLV2-14	IGLJ3	+/+	+/+	22:22759206	22:22904984	CDS	CDS	deletion/read-through	0	0	0	1	13	low	.	.	.	.	.	ENSG00000211666	ENSG00000211678	.	.	downstream	upstream	mismatches(1)	.	.	.
ATXN7L3	FP236383.3	-/-	+/+	17:44197631	21:8441180	CDS	intron	translocation	1	0	0	3	8	low	.	.	.	.	.	ENSG00000087152	ENSG00000280441	.	.	upstream	upstream	min_support	.	.	.
ZNF765	ATXN7L3	+/-	-/-	19:53414480	17:44197668	intron	CDS	translocation/3'-3'	0	0	0	0	3	low	.	.	\|SCA7__zinc-binding_domain(100%),Sgf11_(transcriptional_regulation_protein)(100%)	.	.	ENSG00000196417	ENSG00000087152	.	.	upstream	downstream	homopolymer(1)	.	.	.
ENAH	ZC3H11A	-/+	+/+	1:225593426	1:203798604	intron	5'UTR	duplication/3'-3'	0	1	0	0	2	low	.	.	\|Zinc-finger_containing_family(100%)	.	.	ENSG00000154380	ENSG00000058673	.	.	downstream	upstream	min_support	.	.	.
LINC00486	NUDT4	+/.	+/.	2:32916556	12:93378583	intron	5'UTR	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000173598	.	.	downstream	upstream	low_entropy	.	.	.
STARD13	PPRC1	-/-	+/+	13:33239018	10:102140331	intron	CDS	translocation	0	0	0	0	2	low	.	.	\|RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)	.	.	ENSG00000133121	ENSG00000148840	.	.	upstream	upstream	mismatches(1)	.	.	.
TRAK1	ESR1	+/+	+/-	3:42210117	6:151666702	CDS	intron	translocation/5'-5'	0	0	0	2	0	low	.	.	HAP1_N-terminal_conserved_region(100%),Kinesin_associated_protein(100%)\|	.	.	ENSG00000182606	ENSG00000091831	.	.	downstream	downstream	mismatches(1)	.	.	.
FP236383.3	ZNF518B	+/+	-/-	21:8399770	4:10444450	intron	CDS	translocation	0	0	1	17	4	low	.	.	.	.	.	ENSG00000280441	ENSG00000178163	.	.	downstream	downstream	min_support	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916556	21:8441976	intron	intron	translocation	0	0	0	489	567	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	downstream	upstream	mismatches	.	.	.
EXT1	CCT7	-/-	+/+	8:117961308	2:73244033	intron	CDS	translocation	0	0	0	0	0	low	.	.	Exostosin_family(73%)\|TCP-1/cpn60_chaperonin_family(77%)	.	.	ENSG00000182197	ENSG00000135624	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.3(4169),FP671120.7(274)	NBEAL2	./+	+/+	21:8254318	3:47002081	intergenic	CDS	translocation	0	0	0	4	6	low	.	.	\|Beige/BEACH_domain(100%),Domain_of_unknown_function_(DUF4800)(77%),PH_domain_associated_with_Beige/BEACH(100%),WD_domain__G-beta_repeat(100%)	.	.	.	ENSG00000160796	.	.	downstream	upstream	multimappers(1)	.	.	.
EIF4G2	5_8S_rRNA(3449),FP236383.3(120261)	-/-	./+	11:10802353	21:8260382	CDS	intergenic	translocation	0	0	0	9	37	low	.	.	MIF4G_domain(100%)\|	.	.	ENSG00000110321	.	.	.	upstream	upstream	multimappers(1)	.	.	.
NTRK1	LINC00486	+/.	+/.	1:156874941	2:32916559	CDS	intron	translocation	0	0	0	7	489	low	.	.	.	.	.	ENSG00000198400	ENSG00000230876	.	.	upstream	downstream	mismatches	.	.	.
GMPPB	LINC00486	-/-	+/-	3:49718810	2:32916403	3'UTR	intron	translocation/5'-5'	0	0	0	6	50	low	.	.	Bacterial_transferase_hexapeptide_(six_repeats)(100%),Nucleotidyl_transferase(100%)\|	.	.	ENSG00000173540	ENSG00000230876	.	.	upstream	downstream	mismatches	.	.	.
LINC00486	H3P16	+/.	-/.	2:32916399	4:139698339	intron	exon	translocation	0	0	0	53	1	low	.	.	.	.	.	ENSG00000230876	ENSG00000178458	.	.	downstream	downstream	mismatches	.	.	.
CDC45	FP236383.5	+/+	-/+	22:19483949	21:8438148	CDS	exon	translocation/5'-5'	0	0	0	4	27	low	.	.	CDC45-like_protein(21%)\|	.	.	ENSG00000093009	ENSG00000281181	.	.	downstream	upstream	multimappers(1)	.	.	.
CDC45	FP671120.7	+/+	-/+	22:19483949	21:8255111	CDS	exon	translocation/5'-5'	0	0	0	4	24	low	.	.	CDC45-like_protein(21%)\|	.	.	ENSG00000093009	ENSG00000281383	.	.	downstream	upstream	multimappers(1)	.	.	.
FP236383.3	ZNF383	+/+	+/+	21:8398802	19:37242490	intron	CDS	translocation	0	0	0	22	4	low	.	.	\|Zinc-finger_double_domain(100%),Zinc_finger__C2H2_type(100%)	.	.	ENSG00000280441	ENSG00000188283	.	.	downstream	upstream	multimappers(1)	.	.	.
HNF4A	TCOF1	+/+	+/+	20:44412480	5:150375087	intron	CDS	translocation	0	0	0	0	3	low	.	.	Zinc_finger__C4_type_(two_domains)(100%)\|Treacher_Collins_syndrome_protein_Treacle(71%)	.	.	ENSG00000101076	ENSG00000070814	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
MIR4456(56655),AC106772.1(10083)	TCOF1	./-	+/+	5:592537	5:150375088	intergenic	CDS	inversion	0	0	0	0	3	low	.	.	\|Treacher_Collins_syndrome_protein_Treacle(71%)	.	.	.	ENSG00000070814	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
CDC45	FP236383.4	+/+	-/+	22:19483949	21:8393938	CDS	exon	translocation/5'-5'	0	0	0	4	25	low	.	.	CDC45-like_protein(21%)\|	.	.	ENSG00000093009	ENSG00000280614	.	.	downstream	upstream	multimappers(1)	.	.	.
NPIPB11	LINC00486	-/-	+/-	16:29385549	2:32916555	CDS	intron	translocation/5'-5'	0	0	0	5	489	low	.	.	Nuclear_pore_complex_interacting_protein_(NPIP)(68%)\|	.	.	ENSG00000254206	ENSG00000230876	.	.	upstream	downstream	low_entropy	.	.	.
SP140	SP140L	+/+	+/+	2:230310039	2:230400982	CDS/splice-site	CDS	deletion/read-through	1	0	0	6	3	low	.	.	HSR_domain(100%),SAND_domain(100%)\|Bromodomain(100%),PHD-finger(3%)	.	.	ENSG00000079263	ENSG00000185404	.	.	downstream	upstream	min_support	.	.	.
HTR1E(43021),AL138827.1(10456)	TCOF1	./+	+/+	6:87059700	5:150375098	intergenic	CDS	translocation	0	0	0	0	3	low	.	.	\|Treacher_Collins_syndrome_protein_Treacle(71%)	.	.	.	ENSG00000070814	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
MED15	ARF6	+/+	+/+	22:20584984	14:49894667	CDS	3'UTR	translocation	0	1	0	2	1	low	.	.	ARC105_or_Med15_subunit_of_Mediator_complex_non-fungal(81%)\|	.	.	ENSG00000099917	ENSG00000165527	.	.	downstream	upstream	min_support	.	.	.
LINC00486	CNOT9	+/.	+/.	2:32916504	2:218592632	intron	CDS	deletion	0	0	0	493	3	low	.	.	.	.	.	ENSG00000230876	ENSG00000144580	.	.	downstream	upstream	low_entropy	.	.	.
SEC31B	WNT8B	-/-	+/-	10:100488886	10:100471750	CDS	intron	deletion/read-through/5'-5'	0	0	0	1	1	low	.	.	.	.	.	ENSG00000075826	ENSG00000075290	.	.	upstream	downstream	read_through	.	.	.
LINC00486	GOLPH3L	+/+	-/-	2:32916374	1:150694708	intron	CDS	translocation	0	0	0	50	6	low	.	.	\|Golgi_phosphoprotein_3_(GPP34)(100%)	.	.	ENSG00000230876	ENSG00000143457	.	.	downstream	downstream	inconsistently_clipped(1)	.	.	.
RNU6-211P(41500),ZFYVE16(681)	ZFYVE16	./+	+/+	5:80407332	5:80434109	intergenic	5'UTR/splice-site	deletion/read-through	0	0	0	1	1	low	.	.	\|Domain_of_unknown_function_(DUF3480)(100%),FYVE_zinc_finger(100%)	.	.	.	ENSG00000039319	.	.	downstream	upstream	read_through(1)	.	.	.
LINC00486	TRIM21	+/.	-/.	2:32916555	11:4389659	intron	CDS	translocation	0	0	0	489	0	low	.	.	.	.	.	ENSG00000230876	ENSG00000132109	.	.	downstream	downstream	low_entropy	.	.	.
TNIP1	FP236383.3	-/-	+/+	5:151045936	21:8399122	CDS	intron	translocation	1	0	0	9	80	low	.	.	.	.	.	ENSG00000145901	ENSG00000280441	.	.	upstream	upstream	min_support	.	.	.
RPL14	HSPA9(18557),CTNNA1(16735)	+/+	./+	3:40462031	5:138594232	CDS	intergenic	translocation	0	0	0	56	0	low	.	.	Ribosomal_protein_L14(100%)\|	.	.	ENSG00000188846	.	.	.	downstream	upstream	mismatches(1)	.	.	.
NPIPB11	LINC00486	-/-	+/-	16:29385549	2:32916556	CDS	intron	translocation/5'-5'	0	0	0	5	489	low	.	.	Nuclear_pore_complex_interacting_protein_(NPIP)(68%)\|	.	.	ENSG00000254206	ENSG00000230876	.	.	upstream	downstream	low_entropy	.	.	.
LINC00486	WDR4	+/.	-/.	2:32916556	21:42873618	intron	CDS	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000160193	.	.	downstream	downstream	low_entropy	.	.	.
AC006064.4	FP671120.4	-/+	+/+	12:6537862	21:8216034	exon	intron	translocation/3'-3'	0	0	0	22	47	low	.	.	.	.	.	ENSG00000269968	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
PPP1R9B	FP236383.3	-/-	+/+	17:50150442	21:8445942	CDS	intron	translocation	0	0	0	2	37	low	.	.	.	.	.	ENSG00000108819	ENSG00000280441	.	.	upstream	upstream	homopolymer(1)	.	.	.
FGFR2	FCGR2B	-/-	+/+	10:121546629	1:161673156	intron	CDS	translocation	0	0	0	0	4	low	.	.	Immunoglobulin_I-set_domain(17%),Immunoglobulin_domain(100%)\|Immunoglobulin_domain(14%)	.	.	ENSG00000066468	ENSG00000072694	.	.	upstream	upstream	mismatches(1)	.	.	.
RPS4Y1	FP671120.4	+/+	+/+	Y:2844169	21:8215709	CDS	intron	translocation	1	0	0	4	24	low	.	.	RS4NT_(NUC023)_domain(100%)\|	.	.	ENSG00000129824	ENSG00000278996	.	.	downstream	upstream	min_support	.	.	.
FP236383.3	MCM5	+/+	+/+	21:8400539	22:35416744	intron	CDS	translocation	0	1	0	65	8	low	.	.	\|MCM_AAA-lid_domain(100%),MCM_P-loop_domain(15%)	.	.	ENSG00000280441	ENSG00000100297	.	.	downstream	upstream	min_support	.	.	.
NCF1B	BBX	+/+	+/-	7:73226052	3:107621226	exon/splice-site	intron	translocation/5'-5'	0	0	0	9	0	low	.	.	.	.	.	ENSG00000182487	ENSG00000114439	.	.	downstream	downstream	mismatches(1)	.	.	.
UBR5	FP671120.4	-/-	+/+	8:102279168	21:8214828	CDS	intron	translocation	1	0	0	7	123	low	.	.	E3_ubiquitin_ligase_EDD(100%)\|	.	.	ENSG00000104517	ENSG00000278996	.	.	upstream	upstream	min_support	.	.	.
HLA-C	CU633904.1	-/-	+/+	6:31271075	21:7435057	CDS/splice-site	intron	translocation	0	0	0	74	0	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%)\|	.	.	ENSG00000204525	ENSG00000276077	.	.	upstream	upstream	mismatches(3)	.	.	.
HLA-B	FP236383.5	-/.	-/.	6:31356896	21:8438526	CDS	exon	translocation/3'-3'	0	0	0	21	21	low	.	.	.	.	.	ENSG00000234745	ENSG00000281181	.	.	downstream	downstream	mismatches	.	.	.
AFMID	NLRP3P1(33897),VSIG1(26065)	+/+	./-	17:78191060	X:108018905	CDS/splice-site	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000183077	.	.	.	downstream	downstream	mismatches(1)	.	.	.
ACTB	PHBP11(6235),ACTBP11(104)	-/-	./-	7:5527624	1:223863622	3'UTR	intergenic	translocation	0	0	0	21	0	low	.	.	Actin(100%)\|	.	.	ENSG00000075624	.	.	.	upstream	downstream	homopolymer(1)	.	.	.
RPL13AP7	RPL13AP7	+/+	+/+	21:25362326	21:25362291	exon	exon	duplication/ITD	0	0	0	5	5	low	.	.	.	.	.	ENSG00000213885	ENSG00000213885	.	.	downstream	upstream	duplicates(1),hairpin(1)	.	.	.
FP671120.3(4350),FP671120.7(93)	MIDEAS	./+	-/-	21:8254499	14:73737052	intergenic	CDS	translocation	0	0	0	5	5	low	.	.	\|ELM2_domain(100%)	.	.	.	ENSG00000156030	.	.	downstream	downstream	multimappers(1)	.	.	.
CHD2	CHD2	+/+	+/+	15:93002292	15:93002193	CDS	CDS	duplication/ITD	0	0	0	0	1	low	.	.	CDH1/2_SANT-Helical_linker_1(100%),Chromo_(CHRromatin_Organisation_MOdifier)_domain(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%)\|Domain_of_unknown_function_(DUF4208)(100%)	.	.	ENSG00000173575	ENSG00000173575	.	.	downstream	upstream	duplicates(1),hairpin(1)	.	.	.
LINC00486	RPL32	+/.	-/.	2:32916555	3:12839451	intron	CDS	translocation	0	0	0	489	44	low	.	.	.	.	.	ENSG00000230876	ENSG00000144713	.	.	downstream	downstream	low_entropy	.	.	.
LINC00486	RPL32	+/.	-/.	2:32916556	3:12839451	intron	CDS	translocation	0	0	0	489	44	low	.	.	.	.	.	ENSG00000230876	ENSG00000144713	.	.	downstream	downstream	low_entropy	.	.	.
TUBA1B	FP236383.3	-/-	+/+	12:49128112	21:8397311	CDS	intron	translocation	0	0	0	21	19	low	.	.	Tubulin/FtsZ_family__GTPase_domain(100%),Tubulin_C-terminal_domain(100%)\|	.	.	ENSG00000123416	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
AC011603.2	FP671120.4	+/-	+/+	12:49128112	21:8214273	exon	intron	translocation/3'-3'	0	0	0	21	17	low	.	.	.	.	.	ENSG00000258017	ENSG00000278996	.	.	upstream	upstream	multimappers(1)	.	.	.
DDX5	PID1	-/-	-/-	17:64501927	2:229180821	3'UTR	intron	translocation	1	0	0	6	0	low	.	.	DEAD/DEAH_box_helicase(100%),Helicase_conserved_C-terminal_domain(72%)\|Phosphotyrosine_interaction_domain_(PTB/PID)(99%)	.	.	ENSG00000108654	ENSG00000153823	.	.	upstream	downstream	min_support	.	.	.
ARPC2	RFX4	+/+	+/+	2:218254122	12:106594817	3'UTR	intron	translocation	0	0	0	4	0	low	.	.	Arp2/3_complex__34_kD_subunit_p34-Arc(100%)\|RFX_DNA-binding_domain(100%)	.	.	ENSG00000163466	ENSG00000111783	.	.	downstream	upstream	homopolymer(1)	.	.	.
TUBA1B	FP671120.4	-/-	+/+	12:49128112	21:8214273	CDS	intron	translocation	0	0	0	21	17	low	.	.	Tubulin/FtsZ_family__GTPase_domain(100%),Tubulin_C-terminal_domain(100%)\|	.	.	ENSG00000123416	ENSG00000278996	.	.	upstream	upstream	multimappers(1)	.	.	.
NCOA2	AC111170.1	-/-	-/+	8:70156143	17:77472117	CDS	intron	translocation/5'-5'	1	0	0	2	0	low	.	.	Domain_of_unknown_function_(DUF4927)(12%),PAS_domain(100%),PAS_fold(100%),Steroid_receptor_coactivator(100%),Unstructured_region_on_nuclear_receptor_coactivator_protein(100%)\|	.	.	ENSG00000140396	ENSG00000267016	.	.	upstream	upstream	min_support	.	.	.
ACTG1	POTEI	-/-	-/-	17:81512006	2:130463753	CDS	CDS	translocation	0	0	0	53	0	low	.	.	Actin(22%)\|Actin(83%)	.	.	ENSG00000184009	ENSG00000196834	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	NMRAL1	+/.	-/.	2:32916555	16:4466271	intron	CDS	translocation	0	0	0	489	3	low	.	.	.	.	.	ENSG00000230876	ENSG00000153406	.	.	downstream	downstream	low_entropy	.	.	.
RBM6	RBM6	+/+	+/+	3:50093820	3:50093724	3'UTR	3'UTR	duplication/ITD	0	0	0	2	3	low	.	.	G-patch_domain(100%),OCRE_domain(100%)\|	.	.	ENSG00000004534	ENSG00000004534	.	.	downstream	upstream	duplicates(1),hairpin(1)	.	.	.
LINC00486	MKI67	+/.	-/.	2:32916272	10:128102700	intron	CDS	translocation/3'-3'	0	0	0	332	11	low	.	.	.	.	.	ENSG00000230876	ENSG00000148773	.	.	upstream	downstream	mismatches	.	.	.
HMGB1	HMGB1P24	-/-	-/-	13:30461331	17:37143657	3'UTR	exon	translocation	0	0	0	4	0	low	.	.	HMG-box_domain(100%),HMG_(high_mobility_group)_box(100%)\|	.	.	ENSG00000189403	ENSG00000275029	.	.	upstream	downstream	homopolymer(1)	.	.	.
LINC00486	PPTC7	+/.	-/.	2:32916555	12:110583070	intron	5'UTR	translocation	0	0	0	489	3	low	.	.	.	.	.	ENSG00000230876	ENSG00000196850	.	.	downstream	downstream	low_entropy	.	.	.
AC011603.2	5_8S_rRNA(1561),FP236383.3(122149)	+/-	./+	12:49128112	21:8258494	exon	intergenic	translocation	0	0	0	21	15	low	.	.	.	.	.	ENSG00000258017	.	.	.	upstream	upstream	multimappers(1)	.	.	.
LINC00486	VWA8	+/.	-/.	2:32916407	13:41778053	intron	CDS	translocation	0	0	0	50	14	low	.	.	.	.	.	ENSG00000230876	ENSG00000102763	.	.	downstream	downstream	mismatches	.	.	.
AC011603.2	DPP10	+/-	+/-	12:49128112	2:114937574	exon	intron	translocation	1	0	0	21	0	low	.	.	.	.	.	ENSG00000258017	ENSG00000175497	.	.	upstream	downstream	min_support	.	.	.
TBC1D8B	RPRD2	+/-	+/+	X:106803423	1:150471747	intron	CDS	translocation/3'-3'	0	1	0	0	2	low	.	.	.	.	.	ENSG00000133138	ENSG00000163125	.	.	upstream	upstream	min_support	.	.	.
SEPTIN7	SEPTIN7P3	+/+	+/+	7:35903157	7:35972468	CDS	exon	deletion/read-through	1	0	0	2	1	low	.	.	Septin(100%)\|	.	.	ENSG00000122545	ENSG00000226102	.	.	downstream	upstream	min_support	.	.	.
TTN	FP236383.3	-/-	+/+	2:178565235	21:8444117	CDS	intron	translocation	0	0	0	3	36	low	.	.	Fibronectin_type_III_domain(63%),Immunoglobulin_I-set_domain(82%),PPAK_motif(100%),Titin_Z(100%),Tri-helix_bundle_domain(100%)\|	.	.	ENSG00000155657	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
TSEN54	TSEN54	+/+	+/+	17:75521825	17:75521775	CDS	CDS	duplication/ITD	0	0	0	2	3	low	.	.	tRNA-splicing_endonuclease_subunit_sen54_N-term(100%)\|	.	.	ENSG00000182173	ENSG00000182173	.	.	downstream	upstream	duplicates(1),hairpin(1)	.	.	.
FP671120.4	IRAK1	+/+	-/-	21:8218069	X:154019862	intron	5'UTR	translocation	0	0	0	7	5	low	.	.	\|Death_domain(100%),Protein_kinase_domain(100%)	.	.	ENSG00000278996	ENSG00000184216	.	.	downstream	downstream	multimappers(1)	.	.	.
TTN	FP236383.3	-/-	+/+	2:178565235	21:8399882	CDS	intron	translocation	0	0	0	3	23	low	.	.	Fibronectin_type_III_domain(63%),Immunoglobulin_I-set_domain(82%),PPAK_motif(100%),Titin_Z(100%),Tri-helix_bundle_domain(100%)\|	.	.	ENSG00000155657	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
5_8S_rRNA(2913),FP236383.3(120797)	HNRNPK	./+	-/-	21:8259846	9:83971983	intergenic	CDS	translocation	0	0	0	16	7	low	.	.	\|KH_domain(34%)	.	.	.	ENSG00000165119	.	.	downstream	downstream	multimappers(1)	.	.	.
PPARG(6507),TSEN2(43569)	LMF2	./+	-/+	3:12440863	22:50503626	intergenic	CDS	translocation	0	1	0	0	1	low	.	.	.	.	.	.	ENSG00000100258	.	.	downstream	upstream	min_support	.	.	.
FP236383.3	PARP12	+/-	-/-	21:8399016	7:140046916	intron	CDS	translocation/3'-3'	0	0	0	16	14	low	.	.	\|Poly(ADP-ribose)_polymerase_catalytic_domain(100%),WWE_domain(100%)	.	.	ENSG00000280441	ENSG00000059378	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	PI4K2B	+/.	+/.	2:32916412	4:25234137	intron	5'UTR	translocation	0	0	0	50	14	low	.	.	.	.	.	ENSG00000230876	ENSG00000038210	.	.	downstream	upstream	mismatches	.	.	.
TENT5B(69426),SLC9A1(16533)	RIC1	./+	+/+	1:27082276	9:5656587	intergenic	CDS	translocation	0	0	0	0	4	low	.	.	\|RIC1(100%)	.	.	.	ENSG00000107036	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	NCKAP1L	+/.	+/.	2:32916553	12:54528297	intron	CDS	translocation	0	0	0	489	7	low	.	.	.	.	.	ENSG00000230876	ENSG00000123338	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	AP000356.5	+/.	+/.	2:32916559	22:24620997	intron	3'UTR	translocation	0	0	0	489	1	low	.	.	.	.	.	ENSG00000230876	ENSG00000286070	.	.	downstream	upstream	low_entropy	.	.	.
RPL14	ECH1	+/+	-/+	3:40462078	19:38831105	CDS	CDS	translocation/5'-5'	0	0	0	66	0	low	.	.	Ribosomal_protein_L14(100%)\|	.	.	ENSG00000188846	ENSG00000104823	.	.	downstream	upstream	homopolymer(1)	.	.	.
5_8S_rRNA(1080),AC018688.1(59445)	H2AC18	./-	-/-	20:30486156	1:149842669	intergenic	CDS	translocation	0	0	0	0	70	low	.	.	\|C-terminus_of_histone_H2A(100%),Core_histone_H2A/H2B/H3/H4(93%)	.	.	.	ENSG00000203812	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02139(19845),GSE1(237)	FP236383.3	./+	+/-	16:85169288	21:8444634	intergenic	intron	translocation	0	0	0	0	46	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	downstream	mismatches(1)	.	.	.
RPL14	HEG1	+/+	-/+	3:40462078	3:125001990	CDS	CDS	deletion/5'-5'	0	0	0	66	1	low	.	.	Ribosomal_protein_L14(100%)\|	.	.	ENSG00000188846	ENSG00000173706	.	.	downstream	upstream	homopolymer(1)	.	.	.
AC011603.2	TUBA1C	+/-	+/+	12:49127875	12:49269960	exon	CDS	inversion/3'-3'	0	0	0	2	3	low	.	.	\|Tubulin/FtsZ_family__GTPase_domain(44%),Tubulin_C-terminal_domain(100%)	.	.	ENSG00000258017	ENSG00000167553	.	.	upstream	upstream	mismatches(1)	.	.	.
ACTG1	AC233964.1	-/-	+/+	17:81512006	5:98338923	CDS	exon	translocation	0	0	0	53	0	low	.	.	Actin(22%)\|	.	.	ENSG00000184009	ENSG00000176183	.	.	upstream	upstream	mismatches(1)	.	.	.
5_8S_rRNA(1086),DUX4L32(20492)	H2AC18	./-	-/-	20:29298332	1:149842669	intergenic	CDS	translocation	0	0	0	0	70	low	.	.	\|C-terminus_of_histone_H2A(100%),Core_histone_H2A/H2B/H3/H4(93%)	.	.	.	ENSG00000203812	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	RASAL3	+/.	-/.	2:32916555	19:15456595	intron	CDS	translocation	0	0	0	489	4	low	.	.	.	.	.	ENSG00000230876	ENSG00000105122	.	.	downstream	downstream	low_entropy	.	.	.
CAPZA2	CAPZA2	+/+	+/+	7:116906342	7:116888127	CDS/splice-site	CDS/splice-site	duplication/non-canonical_splicing	1	0	0	1	1	low	.	.	F-actin_capping_protein_alpha_subunit(57%)\|F-actin_capping_protein_alpha_subunit(100%)	.	.	ENSG00000198898	ENSG00000198898	.	.	downstream	upstream	min_support	.	.	.
FP236383.3	ZFHX3	+/+	-/-	21:8399022	16:72795476	intron	CDS	translocation	0	0	0	19	4	low	.	.	\|Homeodomain(50%)	.	.	ENSG00000280441	ENSG00000140836	.	.	downstream	downstream	multimappers(1)	.	.	.
5_8S_rRNA(1075),CT867976.1(223710)	H2AC18	./-	-/-	22:11251034	1:149842669	intergenic	CDS	translocation	0	0	0	0	70	low	.	.	\|C-terminus_of_histone_H2A(100%),Core_histone_H2A/H2B/H3/H4(93%)	.	.	.	ENSG00000203812	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.4	H2AC18	+/+	-/-	21:8211466	1:149842668	intron	CDS	translocation	0	1	0	6	70	low	.	.	\|C-terminus_of_histone_H2A(100%),Core_histone_H2A/H2B/H3/H4(92%)	.	.	ENSG00000278996	ENSG00000203812	.	.	downstream	downstream	min_support	.	.	.
GLI3	FCGR2C	-/+	+/+	7:42026435	1:161591309	intron	CDS	translocation/3'-3'	0	0	0	0	3	low	.	.	\|Immunoglobulin_domain(18%)	.	.	ENSG00000106571	ENSG00000244682	.	.	downstream	upstream	mismatches(1)	.	.	.
5_8S_rRNA(1075)	H2AC19	./+	+/+	14:16056397	1:149851143	intergenic	CDS	translocation	0	0	0	0	72	low	.	.	\|C-terminus_of_histone_H2A(100%),Core_histone_H2A/H2B/H3/H4(93%)	.	.	.	ENSG00000272196	.	.	downstream	upstream	mismatches(1)	.	.	.
RPL23AP42	FP671120.4	-/-	+/+	3:161429299	21:8218702	exon	intron	translocation	0	0	0	7	42	low	.	.	.	.	.	ENSG00000234851	ENSG00000278996	.	.	upstream	upstream	multimappers(1)	.	.	.
CD74	FP671120.4	-/-	+/+	5:150407192	21:8209642	CDS	intron	translocation	1	0	0	53	7	low	.	.	CLIP__MHC2_interacting(62%)\|	.	.	ENSG00000019582	ENSG00000278996	.	.	upstream	upstream	min_support	.	.	.
TUBA1B	5_8S_rRNA(1561),FP236383.3(122149)	-/-	./+	12:49128112	21:8258494	CDS	intergenic	translocation	0	0	0	21	15	low	.	.	Tubulin/FtsZ_family__GTPase_domain(100%),Tubulin_C-terminal_domain(100%)\|	.	.	ENSG00000123416	.	.	.	upstream	upstream	multimappers(1)	.	.	.
CCZ1	CCZ1	+/+	+/+	7:5923962	7:5923387	CDS/splice-site	CDS/splice-site	duplication/non-canonical_splicing	0	0	0	5	4	low	.	.	First_Longin_domain_of_INTU__CCZ1_and_HPS4(100%),Intu_longin-like_domain_2(100%),Intu_longin-like_domain_3(94%)\|Intu_longin-like_domain_3(100%)	.	.	ENSG00000122674	ENSG00000122674	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.7(157),5_8S_rRNA(1110)	H2AC19	./+	+/+	21:8255671	1:149851144	intergenic	CDS	translocation	0	0	0	2	72	low	.	.	\|C-terminus_of_histone_H2A(100%),Core_histone_H2A/H2B/H3/H4(92%)	.	.	.	ENSG00000272196	.	.	downstream	upstream	multimappers(1)	.	.	.
CALCRL	PPRC1	-/-	+/+	2:187363317	10:102140338	intron	CDS	translocation	0	0	0	0	2	low	.	.	7_transmembrane_receptor_(Secretin_family)(29%),Hormone_receptor_domain(100%)\|RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)	.	.	ENSG00000064989	ENSG00000148840	.	.	upstream	upstream	mismatches(1)	.	.	.
GOLGA8B	GOLGA8A	-/-	-/-	15:34528690	15:34382061	CDS	CDS	deletion/read-through	0	0	0	6	15	low	.	.	Putative_golgin_subfamily_A_member_2-like_protein_5(100%)\|GM130_C-terminal_binding_motif(100%)	.	.	ENSG00000215252	ENSG00000175265	.	.	upstream	downstream	mismatches	.	.	.
RPL28	DDX46	+/+	+/+	19:55388325	5:134817519	CDS	CDS	translocation	0	1	0	41	1	low	.	.	Ribosomal_L28e_protein_family(95%)\|	.	.	ENSG00000108107	ENSG00000145833	.	.	downstream	upstream	min_support	.	.	.
FP236383.3	RPL13	+/+	+/+	21:8393329	16:89561020	intron	CDS	translocation	0	0	0	12	35	low	.	.	\|Ribosomal_protein_L13e(93%)	.	.	ENSG00000280441	ENSG00000167526	.	.	downstream	upstream	multimappers(1)	.	.	.
AC007319.1	PPRC1	+/-	+/+	2:187363317	10:102140338	intron	CDS	translocation/3'-3'	0	0	0	0	2	low	.	.	\|RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)	.	.	ENSG00000224063	ENSG00000148840	.	.	upstream	upstream	mismatches(1)	.	.	.
EIF3D	EIF3D	-/-	-/-	22:36518763	22:36519537	CDS/splice-site	CDS/splice-site	duplication/non-canonical_splicing	0	1	0	1	5	low	.	.	Eukaryotic_translation_initiation_factor_3_subunit_7_(eIF-3)(54%)\|Eukaryotic_translation_initiation_factor_3_subunit_7_(eIF-3)(63%)	.	.	ENSG00000100353	ENSG00000100353	.	.	upstream	downstream	min_support	.	.	.
RPL29	RPL29	-/-	-/-	3:51993838	3:51993855	CDS	CDS	duplication/ITD	0	0	0	35	40	low	.	.	Ribosomal_L29e_protein_family(100%)\|	.	.	ENSG00000162244	ENSG00000162244	.	.	upstream	downstream	hairpin(1)	.	.	.
FP671120.4	PNPLA2	+/+	+/+	21:8218266	11:824695	intron	CDS	translocation	0	0	0	4	4	low	.	.	.	.	.	ENSG00000278996	ENSG00000177666	.	.	downstream	upstream	multimappers(1)	.	.	.
CR392039.1(295),CR392039.3(8771)	FP236383.3	./-	+/+	21:8987725	21:8442037	intergenic	intron	inversion	0	0	0	4	527	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
RCC2	LINC00486	-/.	+/.	1:17416577	2:32916556	CDS	intron	translocation	0	0	0	11	489	low	.	.	.	.	.	ENSG00000179051	ENSG00000230876	.	.	downstream	downstream	low_entropy	.	.	.
FP236383.3	MOV10	+/-	+/+	21:8399819	1:112695444	intron	CDS	translocation/3'-3'	0	0	0	31	5	low	.	.	\|AAA_domain(87%)	.	.	ENSG00000280441	ENSG00000155363	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.4	5_8S_rRNA(1945),FP236383.3(121765)	+/+	./+	21:8217101	21:8258878	intron	intergenic	deletion/read-through	0	0	0	22	281	low	.	.	.	.	.	ENSG00000278996	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	GSK3A	+/+	-/-	2:32916491	19:42242194	intron	CDS	translocation	0	0	0	215	0	low	.	.	\|Protein_kinase_domain(100%)	.	.	ENSG00000230876	ENSG00000105723	.	.	downstream	downstream	mismatches(1)	.	.	.
FP236383.3	CCAR2	+/-	+/-	21:8442059	8:22621502	intron	3'UTR	translocation	0	0	0	519	5	low	.	.	.	.	.	ENSG00000280441	ENSG00000158941	.	.	upstream	downstream	multimappers(1)	.	.	.
FP671120.7	PRRC2C	-/+	+/+	21:8255049	1:171577521	exon	CDS	translocation/3'-3'	0	0	0	12	4	low	.	.	.	.	.	ENSG00000281383	ENSG00000117523	.	.	downstream	upstream	multimappers(1)	.	.	.
LINC00486	STAG2	+/.	+/.	2:32916558	X:124100628	intron	3'UTR	translocation	0	0	0	489	3	low	.	.	.	.	.	ENSG00000230876	ENSG00000101972	.	.	downstream	upstream	mismatches	.	.	.
ACTG1	ACTG1P19	-/-	+/+	17:81512006	9:100731433	CDS	exon	translocation	0	0	0	53	0	low	.	.	Actin(22%)\|	.	.	ENSG00000184009	ENSG00000237999	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	DCTN1	+/-	-/-	21:8399147	2:74369468	intron	CDS	translocation/3'-3'	0	0	0	71	4	low	.	.	\|Dynein_associated_protein_(100%)	.	.	ENSG00000280441	ENSG00000204843	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	RFWD3	+/+	-/-	2:32916561	16:74644669	intron	CDS	translocation	0	0	0	480	1	low	.	.	\|Ring_finger_domain(95%)	.	.	ENSG00000230876	ENSG00000168411	.	.	downstream	downstream	low_entropy(1)	.	.	.
MTRNR2L12	LSM12P1	-/-	-/-	3:96618093	8:35525759	5'UTR	exon	translocation	0	0	0	0	4	low	.	.	.	.	.	ENSG00000269028	ENSG00000232024	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC01331	RPL10AP6	-/-	-/-	5:74152889	3:61742821	intron	exon	translocation	0	1	0	0	1	low	.	.	.	.	.	ENSG00000248673	ENSG00000226360	.	.	upstream	downstream	min_support	.	.	.
VPS51	FP236383.3	+/+	+/+	11:65110721	21:8437216	CDS	intron	translocation	0	0	0	6	15	low	.	.	Vps51/Vps67(100%)\|	.	.	ENSG00000149823	ENSG00000280441	.	.	downstream	upstream	multimappers(1)	.	.	.
LINC00486	SERINC1	+/+	-/-	2:32916542	6:122456598	intron	CDS	translocation	0	0	0	489	15	low	.	.	\|Serine_incorporator_(Serinc)(84%)	.	.	ENSG00000230876	ENSG00000111897	.	.	downstream	downstream	homopolymer(1)	.	.	.
NACA	FP236383.3	-/-	+/+	12:56712826	21:8401163	CDS/splice-site	intron	translocation	0	0	0	11	5	low	.	.	HYPK_UBA_domain(58%),NAC_domain(100%)\|	.	.	ENSG00000196531	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
FP671120.4	TCF3(34381),Metazoa_SRP(37119)	+/+	./+	21:8214772	19:1686996	intron	intergenic	translocation	0	0	0	135	0	low	.	.	.	.	.	ENSG00000278996	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	SPECC1	+/+	+/+	2:32916562	17:20204670	intron	CDS	translocation	0	0	0	480	0	low	.	.	\|Calponin_homology_(CH)_domain(100%)	.	.	ENSG00000230876	ENSG00000128487	.	.	downstream	upstream	mismatches(1)	.	.	.
ACTG1	ACTG1P10	-/-	-/-	17:81512006	X:53143722	CDS	exon	translocation	0	0	0	53	0	low	.	.	Actin(22%)\|	.	.	ENSG00000184009	ENSG00000231340	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	NCKAP1L	+/.	+/.	2:32916556	12:54528297	intron	CDS	translocation	0	0	0	489	7	low	.	.	.	.	.	ENSG00000230876	ENSG00000123338	.	.	downstream	upstream	low_entropy	.	.	.
ACTG1	ACTBP6	-/-	+/+	17:81512006	8:84948779	CDS	exon	translocation	0	0	0	53	0	low	.	.	Actin(22%)\|	.	.	ENSG00000184009	ENSG00000203413	.	.	upstream	upstream	mismatches(1)	.	.	.
YBX3	FP236383.3	-/-	+/+	12:10722942	21:8444700	CDS	intron	translocation	0	0	0	3	37	low	.	.	.	.	.	ENSG00000060138	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
ACTG1	AC026410.1	-/-	-/-	17:81512006	5:80302671	CDS	exon	translocation	0	0	0	53	0	low	.	.	Actin(22%)\|	.	.	ENSG00000184009	ENSG00000184188	.	.	upstream	downstream	mismatches(1)	.	.	.
NACA	HFM1	-/-	-/-	12:56712826	1:91387501	CDS/splice-site	intron	translocation	1	0	0	11	3	low	.	.	HYPK_UBA_domain(58%),NAC_domain(100%)\|DEAD/DEAH_box_helicase(100%),Helicase_conserved_C-terminal_domain(100%),Sec63_Brl_domain(100%)	.	.	ENSG00000196531	ENSG00000162669	.	.	upstream	downstream	min_support	.	.	.
MCM3AP	FP671120.6	-/-	-/+	21:46277656	21:8210952	CDS	exon	inversion/5'-5'	0	0	1	3	31	low	.	.	Nucleoporin_homology_of_Germinal-centre_associated_nuclear_protein(100%)\|	.	.	ENSG00000160294	ENSG00000280800	.	.	upstream	upstream	min_support	.	.	.
HLA-A	STX17-AS1	+/+	-/-	6:29943541	9:99400929	CDS/splice-site	intron	translocation	0	0	0	8	0	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%)\|	.	.	ENSG00000206503	ENSG00000255145	.	.	downstream	downstream	mismatches(1)	.	.	.
AL133467.1	SYNE3	+/-	-/-	14:95516596	14:95475835	intron	5'UTR	deletion/read-through/3'-3'	0	1	0	1	1	low	.	.	\|Nuclear_envelope_localisation_domain(100%),Spectrin_repeat(100%)	.	.	ENSG00000258572	ENSG00000176438	.	.	upstream	downstream	min_support	.	.	.
YWHAH	FP671120.7(150),5_8S_rRNA(1117)	+/+	./-	22:31956313	21:8255664	CDS	intergenic	translocation	0	0	0	6	2	low	.	.	14-3-3_protein(34%)\|	.	.	ENSG00000128245	.	.	.	downstream	downstream	multimappers(1)	.	.	.
ACTG1	AP000529.1	-/-	+/+	17:81512006	22:15721677	CDS	exon	translocation	0	0	0	53	0	low	.	.	Actin(22%)\|	.	.	ENSG00000184009	ENSG00000241838	.	.	upstream	upstream	mismatches(1)	.	.	.
DAP3	AC091959.1	+/+	+/+	1:155731417	5:146233598	exon/splice-site	CDS	translocation	0	1	0	1	3	low	.	.	Mitochondrial_ribosomal_death-associated_protein_3(68%)\|RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)	.	.	ENSG00000132676	ENSG00000275740	.	.	downstream	upstream	min_support	.	.	.
5_8S_rRNA(3302),FP236383.3(120408)	FP236383.3	./+	+/+	21:8260235	21:8400399	intergenic	intron	deletion/read-through	0	0	0	30	87	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
ACTG1	POTEE	-/-	+/+	17:81512006	2:131263746	CDS	CDS	translocation	0	0	0	53	0	low	.	.	Actin(22%)\|Actin(83%)	.	.	ENSG00000184009	ENSG00000188219	.	.	upstream	upstream	mismatches(1)	.	.	.
H3C14	LINC00486	-/.	+/.	1:149840902	2:32916555	CDS	intron	translocation	0	0	0	38	489	low	.	.	.	.	.	ENSG00000203811	ENSG00000230876	.	.	downstream	downstream	low_entropy	.	.	.
ANKRD30BL	H2AC18	-/-	-/-	2:132254381	1:149842669	intron	CDS	translocation	0	0	0	0	70	low	.	.	\|C-terminus_of_histone_H2A(100%),Core_histone_H2A/H2B/H3/H4(93%)	.	.	ENSG00000163046	ENSG00000203812	.	.	upstream	downstream	mismatches(1)	.	.	.
DAND5(20681),NFIX(32)	FKBP1A	./+	-/-	19:12995443	20:1393013	intergenic	5'UTR	translocation	0	0	0	0	5	low	.	.	\|FKBP-type_peptidyl-prolyl_cis-trans_isomerase(100%)	.	.	.	ENSG00000088832	.	.	downstream	downstream	mismatches(1)	.	.	.
CHAF1A	CHAF1A	+/+	+/+	19:4422691	19:4422578	CDS	CDS	duplication	0	0	0	1	1	low	.	.	CAF1_complex_subunit_p150__region_binding_to_PCNA(100%),Chromatin_assembly_factor_1_complex_p150_subunit__N-terminal(38%)\|CAF1_complex_subunit_p150__region_binding_to_CAF1-p60_at_C-term(100%),Chromatin_assembly_factor_1_complex_p150_subunit__N-terminal(85%),Chromatin_assembly_factor_1_subunit_A(100%)	.	.	ENSG00000167670	ENSG00000167670	.	.	downstream	upstream	hairpin(1)	.	.	.
PCCB	CCT7	+/-	+/+	3:136278668	2:73244034	intron	CDS	translocation/3'-3'	0	0	0	0	0	low	.	.	\|TCP-1/cpn60_chaperonin_family(76%)	.	.	ENSG00000114054	ENSG00000135624	.	.	upstream	upstream	mismatches(1)	.	.	.
ACTG1	ACTG1	-/-	-/-	17:81512006	17:81512075	CDS	CDS	duplication/ITD	0	0	0	53	68	low	.	.	Actin(22%)\|Actin(83%)	.	.	ENSG00000184009	ENSG00000184009	.	.	upstream	downstream	duplicates(21),hairpin(1),inconsistently_clipped(1)	.	.	.
ZBTB7B	ZBTB7B	+/+	+/+	1:155015354	1:155014792	CDS	CDS	duplication	1	0	0	2	0	low	.	.	BTB/POZ_domain(100%)\|BTB/POZ_domain(82%),Zinc_finger__C2H2_type(100%)	.	.	ENSG00000160685	ENSG00000160685	.	.	downstream	upstream	intragenic_exonic	.	.	.
FP671120.4	TAF4	+/+	-/-	21:8215822	20:61997654	intron	CDS	translocation	0	1	0	19	4	low	.	.	\|Transcription_initiation_factor_TFIID_component_TAF4_family(34%)	.	.	ENSG00000278996	ENSG00000130699	.	.	downstream	downstream	min_support	.	.	.
HDAC6	HDAC6	+/+	+/+	X:48823588	X:48823400	CDS/splice-site	CDS	duplication	1	0	0	1	2	low	.	.	Histone_deacetylase_domain(100%)\|Zn-finger_in_ubiquitin-hydrolases_and_other_protein(100%)	.	.	ENSG00000094631	ENSG00000094631	.	.	downstream	upstream	intragenic_exonic	.	.	.
AC008575.1	APC	+/+	+/+	5:112828972	5:112821896	CDS/splice-site	CDS/splice-site	duplication	1	0	0	1	1	low	.	.	\|APC_15_residue_motif(100%),APC_basic_domain(100%),APC_repeat(100%),Adenomatous_polyposis_coli_(APC)_repeat(38%),Armadillo-associated_region_on_APC(100%),Armadillo/beta-catenin-like_repeat(100%),EB-1_Binding_Domain(100%),SAMP_Motif(100%),Unstructured_region_on_APC_between_1st_and_2nd_catenin-bdg_motifs(100%),Unstructured_region_on_APC_between_1st_two_creatine-rich_regions(100%),Unstructured_region_on_APC_between_APC_crr_and_SAMP(100%),Unstructured_region_on_APC_between_APC_crr_regions_5_and_6(100%),Unstructured_region_on_APC_between_SAMP_and_APC_crr(100%)	.	.	ENSG00000258864	ENSG00000134982	.	.	downstream	upstream	min_support	.	.	.
FP236383.3	HNRNPA0	+/-	-/-	21:8400102	5:137753937	intron	CDS	translocation/3'-3'	0	0	0	31	3	low	.	.	\|RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(70%)	.	.	ENSG00000280441	ENSG00000177733	.	.	upstream	downstream	multimappers(1)	.	.	.
TTF2	KRTAP4-7	+/+	+/+	1:117101562	17:41085031	3'UTR/splice-site	3'UTR	translocation	0	0	0	33	0	low	.	.	GRF_zinc_finger(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%)\|	.	.	ENSG00000116830	ENSG00000240871	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	LGALS9	+/+	+/+	21:8214235	17:27640736	intron	CDS/splice-site	translocation	0	1	0	28	14	low	.	.	\|Galactoside-binding_lectin(67%)	.	.	ENSG00000278996	ENSG00000168961	.	.	downstream	upstream	in_vitro	.	.	.
LINC00486	FP671120.4	+/.	+/.	2:32916558	21:8218675	intron	intron	translocation	0	0	0	489	34	low	.	.	.	.	.	ENSG00000230876	ENSG00000278996	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	EIF3L	+/.	+/.	2:32916556	22:37877865	intron	CDS	translocation	0	0	0	489	8	low	.	.	.	.	.	ENSG00000230876	ENSG00000100129	.	.	downstream	upstream	low_entropy	.	.	.
FCHSD2	HFM1	-/-	-/-	11:72887472	1:91387458	CDS/splice-site	intron	translocation	1	0	0	6	4	low	.	.	Fes/CIP4__and_EFC/F-BAR_homology_domain(100%)\|DEAD/DEAH_box_helicase(100%),Helicase_conserved_C-terminal_domain(100%),Sec63_Brl_domain(100%)	.	.	ENSG00000137478	ENSG00000162669	.	.	upstream	downstream	min_support	.	.	.
SLC25A6	FP236383.3	-/-	+/+	X:1387290	21:8399694	CDS	intron	translocation	0	0	0	45	20	low	.	.	Mitochondrial_carrier_protein(80%)\|	.	.	ENSG00000169100	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
HLA-DRA	FP236383.5	+/+	-/+	6:32442473	21:8438255	CDS	exon	translocation/5'-5'	0	0	0	20	37	low	.	.	Class_II_histocompatibility_antigen__alpha_domain(10%)\|	.	.	ENSG00000204287	ENSG00000281181	.	.	downstream	upstream	mismatches	.	.	.
AC004980.1	AC004980.2(2934),AC006972.1(164546)	+/+	./+	7:76551522	7:76653831	exon/splice-site	intergenic	deletion/read-through	1	0	0	1	0	low	.	.	.	.	.	ENSG00000205485	.	.	.	downstream	upstream	non_coding_neighbors	.	.	.
H2BC18	H2BC18	-/-	-/-	1:149812193	1:149812261	CDS	CDS	duplication/ITD	0	0	0	12	18	low	.	.	Core_histone_H2A/H2B/H3/H4(36%)\|Core_histone_H2A/H2B/H3/H4(88%)	.	.	ENSG00000203814	ENSG00000203814	.	.	upstream	downstream	hairpin(1),inconsistently_clipped(1)	.	.	.
HLA-C	HLA-C	-/-	-/-	6:31272000	6:31271869	CDS/splice-site	exon/splice-site	deletion/read-through	0	0	0	5	9	low	.	.	\|Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%),Immunoglobulin_C1-set_domain(100%),MHC_I_C-terminus(100%)	.	.	ENSG00000204525	ENSG00000204525	.	.	upstream	downstream	duplicates(1)	.	.	.
ANKRD44-IT1	FP671120.4	-/+	+/+	2:197282855	21:8218713	intron	intron	translocation/3'-3'	0	0	0	0	42	low	.	.	.	.	.	ENSG00000236977	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
RYR2	BAG6	+/+	-/-	1:237603296	6:31651743	intron	CDS	translocation	0	0	0	0	7	low	.	.	Inositol_1_4_5-trisphosphate/ryanodine_receptor(100%),MIR_domain(100%),RIH_domain(47%),RyR_domain(50%),SPRY_domain(100%)\|BCL2-associated_athanogene_6(100%),Ubiquitin_family(100%)	.	.	ENSG00000198626	ENSG00000204463	.	.	downstream	downstream	mismatches(1)	.	.	.
HLA-C	HLA-C	-/-	-/-	6:31272026	6:31357112	CDS	intergenic	duplication	0	0	0	3	11	low	.	.	\|Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%),Immunoglobulin_C1-set_domain(100%),MHC_I_C-terminus(100%)	.	.	ENSG00000204525	ENSG00000204525	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	HDLBP	+/.	-/.	2:32916557	2:241255376	intron	CDS	inversion	0	0	0	489	1	low	.	.	.	.	.	ENSG00000230876	ENSG00000115677	.	.	downstream	downstream	low_entropy	.	.	.
GMPPB	LINC00486	-/-	+/-	3:49718810	2:32916404	3'UTR	intron	translocation/5'-5'	0	0	0	6	50	low	.	.	Bacterial_transferase_hexapeptide_(six_repeats)(100%),Nucleotidyl_transferase(100%)\|	.	.	ENSG00000173540	ENSG00000230876	.	.	upstream	downstream	mismatches	.	.	.
TUBA1B	TUBA1C	-/-	+/+	12:49127875	12:49269960	3'UTR	CDS	inversion	0	0	0	2	3	low	.	.	Tubulin/FtsZ_family__GTPase_domain(100%),Tubulin_C-terminal_domain(100%)\|Tubulin/FtsZ_family__GTPase_domain(44%),Tubulin_C-terminal_domain(100%)	.	.	ENSG00000123416	ENSG00000167553	.	.	upstream	upstream	mismatches(1)	.	.	.
RPL14	CELA2B	+/+	+/-	3:40462078	1:15473161	CDS	intron	translocation/5'-5'	0	0	0	66	0	low	.	.	Ribosomal_protein_L14(100%)\|	.	.	ENSG00000188846	ENSG00000215704	.	.	downstream	downstream	homopolymer(1)	.	.	.
RBM39	RBM39	-/-	-/-	20:35714185	20:35725155	CDS/splice-site	CDS/splice-site	duplication/non-canonical_splicing	0	1	0	5	4	low	.	.	RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%),linker_between_RRM2_and_RRM3_domains_in_RBM39_protein(24%)\|RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%),linker_between_RRM2_and_RRM3_domains_in_RBM39_protein(100%)	.	.	ENSG00000131051	ENSG00000131051	.	.	upstream	downstream	min_support	.	.	.
CAPZB	CAPZB	-/-	-/-	1:19485436	1:19419750	CDS/splice-site	CDS/splice-site	deletion/read-through	0	0	0	7	11	low	.	.	\|F-actin_capping_protein__beta_subunit(100%)	.	.	ENSG00000077549	ENSG00000077549	.	.	upstream	downstream	read_through(1)	.	.	.
KCNN3	APP	-/-	-/+	1:154869724	21:25912010	CDS	intron	translocation/5'-5'	0	0	0	2	0	low	.	.	.	.	.	ENSG00000143603	ENSG00000142192	.	.	upstream	upstream	mismatches(1)	.	.	.
5_8S_rRNA(2102),FP236383.3(121608)	FP671120.4	./+	+/+	21:8259035	21:8214806	intergenic	intron	duplication	0	0	0	526	151	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	homopolymer(2)	.	.	.
XPC	FP671120.4	-/-	+/-	3:14158337	21:8216141	CDS	intron	translocation/5'-5'	1	0	0	5	60	low	.	.	Rad4_transglutaminase-like_domain(12%)\|	.	.	ENSG00000154767	ENSG00000278996	.	.	upstream	downstream	min_support	.	.	.
SLC43A2(2490),SCARF1(2482)	SLC43A2	./-	-/-	17:1631376	17:1627920	intergenic	5'UTR/splice-site	deletion/read-through	0	0	0	1	1	low	.	.	\|Major_Facilitator_Superfamily(100%)	.	.	.	ENSG00000167703	.	.	upstream	downstream	read_through(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916419	21:8399089	intron	intron	translocation/3'-3'	0	0	0	219	77	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	upstream	upstream	duplicates	.	.	.
SRRM2	SRRM2	+/+	+/+	16:2764516	16:2764067	CDS	CDS	duplication	1	0	0	3	4	low	.	.	cwf21_domain(100%)\|	.	.	ENSG00000167978	ENSG00000167978	.	.	downstream	upstream	intragenic_exonic	.	.	.
MDN1	MDN1	-/-	-/-	6:89664527	6:89664619	CDS	CDS	duplication/ITD	0	0	0	1	1	low	.	.	AAA_domain_(dynein-related_subfamily)(100%),Midasin_AAA_lid_domain(100%)\|	.	.	ENSG00000112159	ENSG00000112159	.	.	upstream	downstream	duplicates(1),hairpin(1)	.	.	.
LINC00486	PPTC7	+/.	-/.	2:32916556	12:110583070	intron	5'UTR	translocation	0	0	0	489	3	low	.	.	.	.	.	ENSG00000230876	ENSG00000196850	.	.	downstream	downstream	low_entropy	.	.	.
LINC00486	NMRAL1	+/.	-/.	2:32916556	16:4466271	intron	CDS	translocation	0	0	0	489	3	low	.	.	.	.	.	ENSG00000230876	ENSG00000153406	.	.	downstream	downstream	low_entropy	.	.	.
AC026403.1(10943),LINC01947(511680)	CCT7	./+	+/+	5:166393542	2:73244034	intergenic	CDS	translocation	0	0	0	0	0	low	.	.	\|TCP-1/cpn60_chaperonin_family(76%)	.	.	.	ENSG00000135624	.	.	downstream	upstream	mismatches(1)	.	.	.
FCHSD2	FP236383.3	-/-	+/+	11:72887472	21:8401206	CDS/splice-site	intron	translocation	0	0	0	6	5	low	.	.	Fes/CIP4__and_EFC/F-BAR_homology_domain(100%)\|	.	.	ENSG00000137478	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
LINC00486	CANX	+/.	+/.	2:32916549	5:179708336	intron	CDS	translocation	0	0	0	489	21	low	.	.	.	.	.	ENSG00000230876	ENSG00000127022	.	.	downstream	upstream	mismatches	.	.	.
FP236383.3	SLIT2	+/+	+/+	21:8400415	4:20252006	intron	5'UTR	translocation	0	0	0	105	0	low	.	.	\|EGF-like_domain(100%),Human_growth_factor-like_EGF(100%),Laminin_G_domain(100%),Leucine_rich_repeat(100%),Leucine_rich_repeat_C-terminal_domain(100%),Leucine_rich_repeat_N-terminal_domain(100%)	.	.	ENSG00000280441	ENSG00000145147	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	MAT2B	+/.	+/.	2:32916409	5:163505731	intron	CDS	translocation	0	0	0	50	0	low	.	.	.	.	.	ENSG00000230876	ENSG00000038274	.	.	downstream	upstream	mismatches	.	.	.
FCHSD2	FP236383.3	-/-	+/+	11:72887472	21:8445438	CDS/splice-site	intron	translocation	0	0	0	6	4	low	.	.	Fes/CIP4__and_EFC/F-BAR_homology_domain(100%)\|	.	.	ENSG00000137478	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
COP1	LINC00486	-/.	+/.	1:176206744	2:32916556	CDS	intron	translocation	0	0	0	5	489	low	.	.	.	.	.	ENSG00000143207	ENSG00000230876	.	.	downstream	downstream	low_entropy	.	.	.
LINC00486	RPS14	+/+	-/-	2:32916370	5:150446846	intron	CDS	translocation	0	0	0	50	33	low	.	.	\|Ribosomal_protein_S11(49%)	.	.	ENSG00000230876	ENSG00000164587	.	.	downstream	downstream	inconsistently_clipped(1)	.	.	.
TAF3	TAF3	+/+	+/+	10:7965434	10:7965363	CDS	CDS	duplication/ITD	0	0	0	1	1	low	.	.	Bromodomain_associated(100%)\|PHD-finger(100%)	.	.	ENSG00000165632	ENSG00000165632	.	.	downstream	upstream	duplicates(1),hairpin(1)	.	.	.
LINC00486	MCM6	+/+	-/-	2:32916565	2:135857948	intron	CDS	inversion	0	0	0	480	1	low	.	.	\|MCM6_C-terminal_winged-helix_domain(100%),MCM_AAA-lid_domain(100%),MCM_P-loop_domain(37%)	.	.	ENSG00000230876	ENSG00000076003	.	.	downstream	downstream	inconsistently_clipped(1)	.	.	.
JPH2	CAMSAP1	-/+	-/-	20:44159402	9:135811570	intron	CDS	translocation/3'-3'	0	0	0	0	2	low	.	.	\|Microtubule-binding_calmodulin-regulated_spectrin-associated(55%)	.	.	ENSG00000149596	ENSG00000130559	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	SLC25A3	+/.	+/.	2:32916565	12:98594118	intron	CDS	translocation	0	0	0	480	10	low	.	.	.	.	.	ENSG00000230876	ENSG00000075415	.	.	downstream	upstream	mismatches	.	.	.
MYO18A	FP236383.5	-/-	-/+	17:29094671	21:8438407	CDS	exon	translocation/5'-5'	0	0	0	8	17	low	.	.	Myosin_head_(motor_domain)(100%),Myosin_tail(75%),PDZ_domain(100%)\|	.	.	ENSG00000196535	ENSG00000281181	.	.	upstream	upstream	multimappers(1)	.	.	.
LINC00486	CANX	+/.	+/.	2:32916555	5:179708336	intron	CDS	translocation	0	0	0	489	21	low	.	.	.	.	.	ENSG00000230876	ENSG00000127022	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	KIF18A	+/.	-/.	2:32916545	11:28069082	intron	intron	translocation	0	0	0	489	13	low	.	.	.	.	.	ENSG00000230876	ENSG00000121621	.	.	downstream	downstream	mismatches	.	.	.
FP236383.3	LMNB1	+/-	+/+	21:8444134	5:126825999	intron	CDS	translocation/3'-3'	0	0	0	20	6	low	.	.	\|Lamin_Tail_Domain(39%)	.	.	ENSG00000280441	ENSG00000113368	.	.	upstream	upstream	multimappers(1)	.	.	.
PILRB	PILRA	+/+	+/+	7:100358366	7:100374044	CDS/splice-site	CDS/splice-site	deletion/read-through	0	0	0	2	1	low	.	.	\|Immunoglobulin_V-set_domain(100%)	.	.	ENSG00000121716	ENSG00000085514	.	.	downstream	upstream	read_through(1)	.	.	.
TLK1	TLK1	-/-	-/-	2:171022087	2:171022098	intron	intron	duplication/ITD	0	0	0	1	0	low	.	.	\|Protein_kinase_domain(100%)	.	.	ENSG00000198586	ENSG00000198586	.	.	upstream	downstream	hairpin(1),low_entropy(1)	.	.	.
NCOA7	DHX34	+/+	+/+	6:125812983	19:47353001	intron	5'UTR	translocation	0	0	0	0	17	low	.	.	\|Helicase_associated_domain_(HA2)(100%),Helicase_conserved_C-terminal_domain(100%),Oligonucleotide/oligosaccharide-binding_(OB)-fold(100%)	.	.	ENSG00000111912	ENSG00000134815	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
HLA-B	HLA-C	-/-	-/-	6:31356237	6:31271142	CDS	CDS	deletion/read-through	5	4	0	49	73	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(88%)\|Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(11%),Immunoglobulin_C1-set_domain(100%),MHC_I_C-terminus(100%)	.	.	ENSG00000234745	ENSG00000204525	.	.	upstream	downstream	blacklist,duplicates(1),mismatches(2)	.	.	.
H2BC12	H4C9	-/-	+/-	6:27146409	6:27138681	3'UTR	5'UTR	deletion/read-through/5'-5'	0	0	0	60	2	low	.	.	Core_histone_H2A/H2B/H3/H4(100%)\|	.	.	ENSG00000197903	ENSG00000276180	.	.	upstream	downstream	read_through(2)	.	.	.
5_8S_rRNA(2054),FP236383.3(121656)	FP236383.3	./+	+/+	21:8258987	21:8397784	intergenic	intron	deletion/read-through	1	0	0	511	127	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	non_coding_neighbors	.	.	.
RMC1	RPL26	+/+	-/-	18:23503611	17:8382314	5'UTR	5'UTR/splice-site	translocation	0	1	0	0	28	low	.	.	\|KOW_motif(100%),Ribosomal_proteins_L26_eukaryotic__L24P_archaeal(100%)	.	.	ENSG00000141452	ENSG00000161970	.	.	downstream	downstream	min_support	.	.	.
HLA-C	CU638689.5(1001),FP475955.3(63382)	-/-	./+	6:31271075	21:6726210	CDS/splice-site	intergenic	translocation	0	0	0	74	0	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%)\|	.	.	ENSG00000204525	.	.	.	upstream	upstream	mismatches(3)	.	.	.
NDUFS5P6(78255),PREX2(24453)	CCT7	./+	+/+	8:67927593	2:73244034	intergenic	CDS	translocation	0	0	0	0	0	low	.	.	\|TCP-1/cpn60_chaperonin_family(76%)	.	.	.	ENSG00000135624	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	FP671120.4	+/+	+/+	21:8395529	21:8212498	intron	intron	duplication	0	0	0	2	2	low	.	.	.	.	.	ENSG00000280441	ENSG00000278996	.	.	downstream	upstream	homopolymer(1)	.	.	.
5_8S_rRNA(3346),FP236383.3(120364)	JAK3	./+	-/-	21:8260279	19:17839630	intergenic	CDS	translocation	0	0	0	31	7	low	.	.	\|Protein_kinase_domain(100%)	.	.	.	ENSG00000105639	.	.	downstream	downstream	multimappers(1)	.	.	.
LINC00486	VWA8	+/.	-/.	2:32916409	13:41778053	intron	CDS	translocation	0	0	0	50	14	low	.	.	.	.	.	ENSG00000230876	ENSG00000102763	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	GOLIM4	+/.	-/.	2:32916555	3:168032646	intron	CDS	translocation	0	0	0	489	3	low	.	.	.	.	.	ENSG00000230876	ENSG00000173905	.	.	downstream	downstream	low_entropy	.	.	.
FP671120.4	FP236383.3	+/+	+/+	21:8217378	21:8400399	intron	intron	deletion/read-through	0	0	0	83	87	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
DDX5	FP236383.3	-/-	+/+	17:64501927	21:8399420	3'UTR	intron	translocation	0	0	0	6	19	low	.	.	DEAD/DEAH_box_helicase(100%),Helicase_conserved_C-terminal_domain(72%)\|	.	.	ENSG00000108654	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
AL450405.1	AL450405.1	+/+	+/+	6:117999211	6:117999089	exon	exon	duplication	0	0	0	11	13	low	.	.	.	.	.	ENSG00000230202	ENSG00000230202	.	.	downstream	upstream	hairpin(1)	.	.	.
LINC00836	AFDN	+/+	+/+	10:25659873	6:167872271	intron	CDS	translocation	0	0	0	0	7	low	.	.	\|DIL_domain(100%),FHA_domain(100%),PDZ_domain(100%),Ras_association_(RalGDS/AF-6)_domain(51%)	.	.	ENSG00000280809	ENSG00000130396	.	.	downstream	upstream	mismatches(1)	.	.	.
WWC3	TMEM248	+/+	+/+	X:10081596	7:66950906	intron	intron	translocation	0	0	0	0	1	low	.	.	\|Transmembrane_219(23%)	.	.	ENSG00000047644	ENSG00000106609	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
LINC00486	SERINC1	+/+	-/-	2:32916546	6:122456598	intron	CDS	translocation	0	0	0	489	15	low	.	.	\|Serine_incorporator_(Serinc)(84%)	.	.	ENSG00000230876	ENSG00000111897	.	.	downstream	downstream	homopolymer(1)	.	.	.
LINC00486	POLR3H	+/.	-/.	2:32916574	22:41531147	intron	intron	translocation/5'-5'	0	0	0	480	1	low	.	.	.	.	.	ENSG00000230876	ENSG00000100413	.	.	downstream	upstream	mismatches	.	.	.
FP236383.3	AL359834.1(43668),KIF14(24225)	+/+	./-	21:8400415	1:200527272	intron	intergenic	translocation	0	0	0	105	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	downstream	downstream	inconsistently_clipped(1)	.	.	.
TTF2	EIF4E3	+/+	-/+	1:117101562	3:71715067	3'UTR/splice-site	intron	translocation/5'-5'	0	0	0	33	0	low	.	.	GRF_zinc_finger(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%)\|	.	.	ENSG00000116830	ENSG00000163412	.	.	downstream	upstream	mismatches(1)	.	.	.
NFATC2(18051),ATP9A(15632)	HLA-DPA1	./+	-/-	20:51580882	6:33069885	intergenic	CDS/splice-site	translocation	0	0	0	0	50	low	.	.	\|Class_II_histocompatibility_antigen__alpha_domain(100%),Immunoglobulin_C1-set_domain(100%)	.	.	.	ENSG00000231389	.	.	downstream	downstream	mismatches(1)	.	.	.
PRKCB	CCT7	+/-	+/+	16:24198992	2:73244034	intron	CDS	translocation/3'-3'	0	0	0	0	0	low	.	.	\|TCP-1/cpn60_chaperonin_family(76%)	.	.	ENSG00000166501	ENSG00000135624	.	.	upstream	upstream	mismatches(1)	.	.	.
ARHGAP30	ARHGAP30	-/-	-/-	1:161048665	1:161049048	CDS	CDS	duplication	1	0	0	2	1	low	.	.	RhoGAP_domain(100%)\|	.	.	ENSG00000186517	ENSG00000186517	.	.	upstream	downstream	intragenic_exonic	.	.	.
FP236383.3	HNRNPA0	+/-	-/-	21:8444337	5:137753937	intron	CDS	translocation/3'-3'	0	0	0	18	3	low	.	.	\|RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(70%)	.	.	ENSG00000280441	ENSG00000177733	.	.	upstream	downstream	multimappers(1)	.	.	.
FP236383.3	ZFP36L1	+/+	-/-	21:8397277	14:68793050	intron	CDS	translocation	0	0	0	31	7	low	.	.	\|Tis11B_like_protein__N_terminus(100%),Zinc_finger_C-x8-C-x5-C-x3-H_type_(and_similar)(100%)	.	.	ENSG00000280441	ENSG00000185650	.	.	downstream	downstream	multimappers(1)	.	.	.
LINC00486	5_8S_rRNA(1997),FP236383.3(121713)	+/.	./.	2:32916554	21:8258930	intron	intergenic	translocation	0	0	0	489	466	low	.	.	.	.	.	ENSG00000230876	.	.	.	downstream	upstream	low_entropy	.	.	.
BCL7B	PARP12	-/-	-/-	7:73557587	7:140046917	5'UTR	CDS	duplication	0	0	0	1	14	low	.	.	\|Poly(ADP-ribose)_polymerase_catalytic_domain(100%),WWE_domain(100%)	.	.	ENSG00000106635	ENSG00000059378	.	.	upstream	downstream	mismatches(1)	.	.	.
ABRAXAS2	ABRAXAS2	+/+	+/+	10:124831462	10:124831345	CDS/splice-site	intron	duplication	1	0	0	1	1	low	.	.	.	.	.	ENSG00000165660	ENSG00000165660	.	.	downstream	upstream	intragenic_exonic	.	.	.
HLA-B	FP236383.4	-/.	-/.	6:31356896	21:8394316	CDS	exon	translocation/3'-3'	0	0	0	21	18	low	.	.	.	.	.	ENSG00000234745	ENSG00000280614	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	STAG2	+/.	+/.	2:32916557	X:124100628	intron	3'UTR	translocation	0	0	0	489	3	low	.	.	.	.	.	ENSG00000230876	ENSG00000101972	.	.	downstream	upstream	mismatches	.	.	.
FBXO10	FP236383.3	-/-	+/+	9:37537291	21:8434052	CDS	intron	translocation	0	0	1	1	3	low	.	.	F-box-like(100%)\|	.	.	ENSG00000147912	ENSG00000280441	.	.	upstream	upstream	min_support	.	.	.
LINC00486	5_8S_rRNA(1376),FP236383.3(122334)	+/.	./.	2:32916559	21:8258309	intron	intergenic	translocation	0	0	0	489	13	low	.	.	.	.	.	ENSG00000230876	.	.	.	downstream	upstream	mismatches	.	.	.
ARHGAP12(41206),RPL34P19(13803)	EPS15	./+	-/-	10:31970082	1:51461129	intergenic	CDS	translocation	0	1	0	0	2	low	.	.	\|Cytoskeletal-regulatory_complex_EF_hand(56%)	.	.	.	ENSG00000085832	.	.	downstream	downstream	min_support	.	.	.
AC092647.5	FP671120.4	+/-	+/-	7:55887600	21:8217364	5'UTR	intron	translocation	0	0	0	1	83	low	.	.	.	.	.	ENSG00000249773	ENSG00000278996	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	FP671120.4	+/.	+/.	2:32916419	21:8216055	intron	intron	translocation/3'-3'	0	0	0	219	54	low	.	.	.	.	.	ENSG00000230876	ENSG00000278996	.	.	upstream	upstream	mismatches	.	.	.
ZC3HAV1L	KIAA1549(41778),ZC3HAV1L(2539)	-/-	./-	7:139026708	7:139023167	CDS/splice-site	intergenic	deletion/read-through	0	0	0	1	1	low	.	.	Zap__helix_turn_helix_N-terminal_domain(100%)\|	.	.	ENSG00000146858	.	.	.	upstream	downstream	read_through(1)	.	.	.
TTF2	AC097634.4	+/+	-/+	1:117101562	3:71715067	3'UTR/splice-site	intron	translocation/5'-5'	0	0	0	33	0	low	.	.	GRF_zinc_finger(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%)\|	.	.	ENSG00000116830	ENSG00000285708	.	.	downstream	upstream	mismatches(1)	.	.	.
KDM3B	5_8S_rRNA(1982),FP236383.3(121728)	+/+	./+	5:138420893	21:8258915	CDS	intergenic	translocation	0	0	0	3	386	low	.	.	.	.	.	ENSG00000120733	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
LINC00486	SERINC1	+/+	-/-	2:32916543	6:122456598	intron	CDS	translocation	0	0	0	489	15	low	.	.	\|Serine_incorporator_(Serinc)(84%)	.	.	ENSG00000230876	ENSG00000111897	.	.	downstream	downstream	homopolymer(1)	.	.	.
FP236383.3	FLVCR1	+/+	+/+	21:8443017	1:212859132	intron	CDS	translocation	0	0	0	22	9	low	.	.	\|Major_Facilitator_Superfamily(70%)	.	.	ENSG00000280441	ENSG00000162769	.	.	downstream	upstream	multimappers(1)	.	.	.
CASZ1	ZNF598	-/-	-/-	1:10694148	16:2009766	intron	5'UTR	translocation	0	1	0	0	1	low	.	.	.	.	.	ENSG00000130940	ENSG00000167962	.	.	upstream	downstream	min_support	.	.	.
PSMA2P1(45326),AP003497.1(105358)	MIA3	./-	+/+	11:87375378	1:222654658	intergenic	CDS	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000154305	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00486	BCL2	+/.	-/.	2:32916556	18:63318239	intron	CDS	translocation	0	0	0	489	3	low	.	.	.	.	.	ENSG00000230876	ENSG00000171791	.	.	downstream	downstream	low_entropy	.	.	.
LINC00486	5_8S_rRNA(1997),FP236383.3(121713)	+/.	./.	2:32916556	21:8258930	intron	intergenic	translocation	0	0	0	489	466	low	.	.	.	.	.	ENSG00000230876	.	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916555	21:8441976	intron	intron	translocation	0	0	0	489	567	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	downstream	upstream	mismatches	.	.	.
AL590623.1(63910),KSR1P1(3302292)	CCT7	./+	+/+	10:38847018	2:73244033	intergenic	CDS	translocation	0	0	0	0	0	low	.	.	\|TCP-1/cpn60_chaperonin_family(77%)	.	.	.	ENSG00000135624	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	JAK3	+/+	-/-	21:8399084	19:17839630	intron	CDS	translocation	0	0	0	51	7	low	.	.	\|Protein_kinase_domain(100%)	.	.	ENSG00000280441	ENSG00000105639	.	.	downstream	downstream	multimappers(1)	.	.	.
FP236383.5	PRRC2C	-/+	+/+	21:8438086	1:171577521	exon	CDS	translocation/3'-3'	0	0	0	13	4	low	.	.	.	.	.	ENSG00000281181	ENSG00000117523	.	.	downstream	upstream	multimappers(1)	.	.	.
NCF1C	BBX	-/-	+/-	7:75166536	3:107621226	intron	intron	translocation/5'-5'	0	0	0	11	0	low	.	.	.	.	.	ENSG00000165178	ENSG00000114439	.	.	upstream	downstream	mismatches(1)	.	.	.
HLA-A	MLLT6	+/+	+/-	6:29943541	17:38724322	CDS/splice-site	exon	translocation/5'-5'	0	0	0	8	0	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%)\|	.	.	ENSG00000206503	ENSG00000275023	.	.	downstream	downstream	mismatches(1)	.	.	.
PLEKHO1	FP671120.7	+/+	-/+	1:150156091	21:8255419	CDS	exon	translocation/5'-5'	0	0	0	5	4	low	.	.	PH_domain(41%)\|	.	.	ENSG00000023902	ENSG00000281383	.	.	downstream	upstream	multimappers(1)	.	.	.
LINC00486	RAB21	+/.	+/.	2:32916551	12:71755060	intron	5'UTR	translocation	0	0	0	489	6	low	.	.	.	.	.	ENSG00000230876	ENSG00000080371	.	.	downstream	upstream	low_entropy	.	.	.
FP671120.4	FP671120.4	+/+	+/+	21:8217374	21:8217366	intron	intron	duplication/ITD	0	0	0	83	59	low	.	.	.	.	.	ENSG00000278996	ENSG00000278996	.	.	downstream	upstream	low_entropy(2),merge_adjacent	.	.	.
ACTG1	AL359924.1	-/-	+/+	17:81512006	1:237927020	CDS	exon	translocation	0	0	0	53	0	low	.	.	Actin(22%)\|	.	.	ENSG00000184009	ENSG00000237250	.	.	upstream	upstream	mismatches(1)	.	.	.
DYNC1H1	DYNC1H1	+/+	+/+	14:102039231	14:102039208	CDS	CDS	duplication/ITD	0	0	0	3	3	low	.	.	ATP-binding_dynein_motor_region(100%),Dynein_heavy_chain_AAA_lid_domain(42%),Dynein_heavy_chain__N-terminal_region_1(100%),Dynein_heavy_chain__N-terminal_region_2(100%),Hydrolytic_ATP_binding_site_of_dynein_motor_region(100%),Microtubule-binding_stalk_of_dynein_motor(100%),P-loop_containing_dynein_motor_region(100%),P-loop_containing_dynein_motor_region_D4(100%)\|Dynein_heavy_chain_AAA_lid_domain(57%),Dynein_heavy_chain_C-terminal_domain(100%),Dynein_heavy_chain_region_D6_P-loop_domain_(100%)	.	.	ENSG00000197102	ENSG00000197102	.	.	downstream	upstream	duplicates(2),low_entropy(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916556	21:8441983	intron	intron	translocation	0	0	0	489	563	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	downstream	upstream	low_entropy	.	.	.
SLC25A6	FP236383.3	-/-	+/+	X:1387290	21:8443929	CDS	intron	translocation	0	0	0	45	19	low	.	.	Mitochondrial_carrier_protein(80%)\|	.	.	ENSG00000169100	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
FP236383.3	FP671120.4	+/+	+/+	21:8444649	21:8217371	intron	intron	duplication	0	2	0	59	59	low	.	.	.	.	.	ENSG00000280441	ENSG00000278996	.	.	downstream	upstream	mismatches(1),relative_support	.	.	.
LINC00486	CANX	+/.	+/.	2:32916551	5:179708336	intron	CDS	translocation	0	0	0	489	21	low	.	.	.	.	.	ENSG00000230876	ENSG00000127022	.	.	downstream	upstream	mismatches	.	.	.
FP671120.4	PLEC	+/+	-/-	21:8214647	8:143919469	intron	CDS	translocation	0	1	0	84	4	low	.	.	\|Plectin_repeat(55%)	.	.	ENSG00000278996	ENSG00000178209	.	.	downstream	downstream	min_support	.	.	.
PFN1	PFN1	-/-	-/-	17:4945794	17:4945850	3'UTR	3'UTR	duplication/ITD	0	0	0	20	28	low	.	.	Profilin(100%)\|	.	.	ENSG00000108518	ENSG00000108518	.	.	upstream	downstream	hairpin(1)	.	.	.
FP236383.4	PFN1	-/+	-/-	21:8393698	17:4948429	exon	CDS	translocation/3'-3'	0	0	0	31	31	low	.	.	\|Profilin(100%)	.	.	ENSG00000280614	ENSG00000108518	.	.	downstream	downstream	multimappers(1)	.	.	.
FP671120.4	DRG1	+/-	+/+	21:8216890	22:31433890	intron	CDS	translocation/3'-3'	0	1	0	31	1	low	.	.	\|TGS_domain(33%)	.	.	ENSG00000278996	ENSG00000185721	.	.	upstream	upstream	min_support	.	.	.
INTS2	INTS2	-/-	-/-	17:61907407	17:61907541	intron	CDS	duplication	0	0	0	1	1	low	.	.	Integrator_complex_subunit_2(34%)\|Integrator_complex_subunit_2(69%)	.	.	ENSG00000108506	ENSG00000108506	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	VWA8	+/.	-/.	2:32916400	13:41778053	intron	CDS	translocation	0	0	0	53	14	low	.	.	.	.	.	ENSG00000230876	ENSG00000102763	.	.	downstream	downstream	mismatches	.	.	.
FP671120.6	TNRC6A	-/+	+/+	21:8210707	16:24791661	exon	CDS	translocation/3'-3'	0	1	0	22	5	low	.	.	\|Argonaute_hook(94%),M_domain_of_GW182(100%),TNRC6-PABC_binding_domain(100%)	.	.	ENSG00000280800	ENSG00000090905	.	.	downstream	upstream	min_support	.	.	.
FP236383.5	TNRC6A	-/+	+/+	21:8437952	16:24791661	exon	CDS	translocation/3'-3'	0	0	0	21	5	low	.	.	\|Argonaute_hook(94%),M_domain_of_GW182(100%),TNRC6-PABC_binding_domain(100%)	.	.	ENSG00000281181	ENSG00000090905	.	.	downstream	upstream	multimappers(1)	.	.	.
STAT1	STAT1	-/-	-/-	2:190998262	2:190998310	CDS	intron	duplication/ITD	0	0	0	8	8	low	.	.	STAT_protein__all-alpha_domain(34%),STAT_protein__protein_interaction_domain(100%)\|SH2_domain(100%),STAT1_TAZ2_binding_domain(100%),STAT_protein__DNA_binding_domain(100%),STAT_protein__all-alpha_domain(74%)	.	.	ENSG00000115415	ENSG00000115415	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
RPS21	FP671120.7	+/+	-/+	20:62387627	21:8254663	CDS	exon	translocation/5'-5'	0	0	0	25	23	low	.	.	Ribosomal_protein_S21e_(25%)\|	.	.	ENSG00000171858	ENSG00000281383	.	.	downstream	upstream	multimappers(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916554	21:8441965	intron	intron	translocation	0	0	0	489	567	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	downstream	upstream	low_entropy	.	.	.
HLA-DRB1	HLA-DRB5	-/-	-/-	6:32581828	6:32519640	CDS	CDS	deletion/read-through	0	0	0	0	5	low	.	.	Class_II_histocompatibility_antigen__beta_domain(100%)\|Immunoglobulin_C1-set_domain(100%)	.	.	ENSG00000196126	ENSG00000198502	.	.	upstream	downstream	duplicates(1),mismatches(1)	.	.	.
CEP290	CEP290	-/-	-/-	12:88111202	12:88141334	CDS/splice-site	5'UTR/splice-site	duplication/non-canonical_splicing	0	1	0	0	3	low	.	.	\|Coiled-coil_region_of_centrosome_protein_CE290(100%)	.	.	ENSG00000198707	ENSG00000198707	.	.	upstream	downstream	min_support	.	.	.
SHLD2	SHLD2	+/+	+/+	10:87158155	10:87151350	CDS/splice-site	5'UTR/splice-site	duplication/non-canonical_splicing	0	1	0	0	6	low	.	.	\|Protein_family_FAM35__C-terminal(100%)	.	.	ENSG00000122376	ENSG00000122376	.	.	downstream	upstream	min_support	.	.	.
ACTG1	POTEG	-/-	-/-	17:81512006	14:19402718	CDS	3'UTR	translocation	0	0	0	53	0	low	.	.	Actin(22%)\|	.	.	ENSG00000184009	ENSG00000187537	.	.	upstream	downstream	mismatches(1)	.	.	.
FP236383.3	FP671120.4	+/+	+/+	21:8443316	21:8216051	intron	intron	duplication	0	1	0	29	54	low	.	.	.	.	.	ENSG00000280441	ENSG00000278996	.	.	downstream	upstream	low_entropy(1),min_support	.	.	.
FP671120.4	MIDEAS	+/+	-/-	21:8210291	14:73737052	intron	CDS	translocation	0	1	0	11	5	low	.	.	\|ELM2_domain(100%)	.	.	ENSG00000278996	ENSG00000156030	.	.	downstream	downstream	min_support	.	.	.
MIB1	VAPA	+/+	+/+	18:21741812	18:9931810	CDS/splice-site	CDS/splice-site	duplication	0	1	0	1	2	low	.	.	Mib_herc2(47%)\|MSP_(Major_sperm_protein)_domain(88%)	.	.	ENSG00000101752	ENSG00000101558	.	.	downstream	upstream	min_support	.	.	.
PTEN	PTEN	+/+	+/+	10:87933251	10:87864454	CDS/splice-site	5'UTR	duplication	0	1	0	3	7	low	.	.	Dual_specificity_phosphatase__catalytic_domain(100%)\|C2_domain_of_PTEN_tumour-suppressor_protein(100%),Dual_specificity_phosphatase__catalytic_domain(100%)	.	.	ENSG00000171862	ENSG00000171862	.	.	downstream	upstream	intragenic_exonic	.	.	.
FP671120.4	RPS2P55	+/-	-/-	21:8216932	X:40935778	intron	exon	translocation/3'-3'	0	0	0	12	21	low	.	.	.	.	.	ENSG00000278996	ENSG00000216866	.	.	upstream	downstream	multimappers(1)	.	.	.
ARID4A	ARID4A	+/-	+/+	14:58351100	14:58347866	CDS	CDS	inversion/3'-3'	0	0	0	2	0	low	.	.	\|RNA_binding_activity-knot_of_a_chromodomain_(100%)	.	.	ENSG00000032219	ENSG00000032219	.	.	upstream	upstream	hairpin(1)	.	.	.
LINC00486	PSMA7	+/.	-/.	2:32916461	20:62143320	intron	5'UTR	translocation	0	0	0	219	7	low	.	.	.	.	.	ENSG00000230876	ENSG00000101182	.	.	downstream	downstream	low_entropy	.	.	.
LINC00486	5_8S_rRNA(2014),FP236383.3(121696)	+/.	./.	2:32916555	21:8258947	intron	intergenic	translocation	0	0	0	489	511	low	.	.	.	.	.	ENSG00000230876	.	.	.	downstream	upstream	low_entropy	.	.	.
NCL	NCL	-/-	-/-	2:231460773	2:231460865	CDS	CDS/splice-site	duplication/ITD	0	0	0	21	20	low	.	.	\|RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)	.	.	ENSG00000115053	ENSG00000115053	.	.	upstream	downstream	hairpin(1),inconsistently_clipped(1)	.	.	.
RPL14P1	RPL14P1	+/+	+/+	12:62965801	12:62965772	exon	exon	duplication/ITD	0	0	0	20	20	low	.	.	.	.	.	ENSG00000139239	ENSG00000139239	.	.	downstream	upstream	low_entropy(4)	.	.	.
AF241726.1	FP236383.3	+/+	+/-	X:38561534	21:8400399	intron	intron	translocation/5'-5'	0	1	0	0	37	low	.	.	Vitamin_K-dependent_carboxylation/gamma-carboxyglutamic_(GLA)_domain(100%)\|	.	.	ENSG00000250349	ENSG00000280441	.	.	downstream	downstream	inconsistently_clipped(1),min_support	.	.	.
5_8S_rRNA(3457),FP236383.3(120253)	FP236383.3	./.	+/.	21:8260390	21:8443324	intergenic	intron	deletion/read-through	0	0	0	57	41	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches	.	.	.
KANSL1L	FP236383.3	-/+	+/-	2:210171343	21:8400399	5'UTR	intron	translocation	0	0	0	10	37	low	.	.	.	.	.	ENSG00000144445	ENSG00000280441	.	.	downstream	downstream	mismatches(1)	.	.	.
FP236383.3	GPCPD1	+/+	-/-	21:8441905	20:5578472	intron	CDS	translocation	0	1	0	112	4	low	.	.	\|Glycerophosphoryl_diester_phosphodiesterase_family(100%)	.	.	ENSG00000280441	ENSG00000125772	.	.	downstream	downstream	min_support	.	.	.
FP236383.3	PARP12	+/-	-/-	21:8443245	7:140046916	intron	CDS	translocation/3'-3'	0	0	0	16	14	low	.	.	\|Poly(ADP-ribose)_polymerase_catalytic_domain(100%),WWE_domain(100%)	.	.	ENSG00000280441	ENSG00000059378	.	.	upstream	downstream	mismatches(1)	.	.	.
MYH9	MYH9	-/-	-/-	22:36300851	22:36300955	CDS/splice-site	CDS	duplication	0	0	0	6	4	low	.	.	Myosin_N-terminal_SH3-like_domain(100%),Myosin_head_(motor_domain)(100%),Myosin_tail(9%)\|Myosin_tail(93%)	.	.	ENSG00000100345	ENSG00000100345	.	.	upstream	downstream	hairpin(1)	.	.	.
HLA-A	WFS1	+/+	+/-	6:29943541	4:6290984	CDS/splice-site	intron	translocation/5'-5'	0	0	0	8	0	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%)\|	.	.	ENSG00000206503	ENSG00000109501	.	.	downstream	downstream	mismatches(1)	.	.	.
MYCBP2	MYCBP2	-/-	-/-	13:77076759	13:77076791	CDS/splice-site	CDS	duplication/ITD	0	0	0	3	3	low	.	.	Anaphase-promoting_complex__subunit_10_(APC10)(100%),Bacterial_SH3_domain(100%),PHR_domain_(100%),Regulator_of_chromosome_condensation_(RCC1)_repeat(100%)\|Ring_finger_domain(100%)	.	.	ENSG00000005810	ENSG00000005810	.	.	upstream	downstream	hairpin(1),inconsistently_clipped(1)	.	.	.
FP236383.3	MIDEAS	+/+	-/-	21:8393326	14:73737052	intron	CDS	translocation	0	0	0	12	5	low	.	.	\|ELM2_domain(100%)	.	.	ENSG00000280441	ENSG00000156030	.	.	downstream	downstream	multimappers(1)	.	.	.
FP236383.3	BIN3	+/-	-/-	21:8442059	8:22621502	intron	CDS	translocation/3'-3'	0	0	0	519	5	low	.	.	.	.	.	ENSG00000280441	ENSG00000147439	.	.	upstream	downstream	multimappers(1)	.	.	.
THADA	THADA	-/-	-/-	2:43552315	2:43549324	CDS	CDS	deletion/read-through	0	0	0	1	2	low	.	.	\|THADA/TRM732__DUF2428(83%)	.	.	ENSG00000115970	ENSG00000115970	.	.	upstream	downstream	read_through(1)	.	.	.
LINC00486	TPM3	+/+	-/-	2:32916555	1:154183073	intron	CDS	translocation	0	0	0	489	21	low	.	.	\|Tropomyosin(89%)	.	.	ENSG00000230876	ENSG00000143549	.	.	downstream	downstream	homopolymer(1)	.	.	.
PDE3B	FP236383.3	+/+	+/+	11:14645021	21:8392866	CDS	intron	translocation	0	0	0	5	24	low	.	.	.	.	.	ENSG00000152270	ENSG00000280441	.	.	downstream	upstream	multimappers(1)	.	.	.
EGLN1	LINC00486	-/.	+/.	1:231421707	2:32916554	CDS	intron	translocation	0	0	0	4	489	low	.	.	.	.	.	ENSG00000135766	ENSG00000230876	.	.	downstream	downstream	low_entropy	.	.	.
LSM1P2(73138),AC008662.1(158133)	BUD23	./+	+/+	5:163960965	7:73690915	intergenic	intron	translocation	0	0	0	0	6	low	.	.	\|Methyltransferase_domain(15%),Methyltransferase_involved_in_Williams-Beuren_syndrome(100%)	.	.	.	ENSG00000071462	.	.	downstream	upstream	duplicates(1),mismatches(1)	.	.	.
FP236383.3	RPS21	+/+	+/+	21:8399269	20:62387377	intron	CDS	translocation	0	0	0	39	0	low	.	.	\|Ribosomal_protein_S21e_(85%)	.	.	ENSG00000280441	ENSG00000171858	.	.	downstream	upstream	multimappers(1)	.	.	.
CDC20	LINC00486	+/.	+/.	1:43361201	2:32916556	CDS	intron	translocation	0	0	0	3	489	low	.	.	.	.	.	ENSG00000117399	ENSG00000230876	.	.	upstream	downstream	low_entropy	.	.	.
LINC00486	MYO19	+/.	-/.	2:32916554	17:36515987	intron	CDS	translocation	0	0	0	489	5	low	.	.	.	.	.	ENSG00000230876	ENSG00000278259	.	.	downstream	downstream	low_entropy	.	.	.
5_8S_rRNA(3409),FP236383.3(120301)	DCTN1	./-	-/-	21:8260342	2:74369468	intergenic	CDS	translocation	0	0	0	57	4	low	.	.	\|Dynein_associated_protein_(100%)	.	.	.	ENSG00000204843	.	.	upstream	downstream	mismatches(1)	.	.	.
KCNAB2	FP236383.4	+/+	-/+	1:6091387	21:8394107	intron	exon	translocation/5'-5'	0	0	0	3	28	low	.	.	Aldo/keto_reductase_family(45%)\|	.	.	ENSG00000069424	ENSG00000280614	.	.	downstream	upstream	multimappers(1)	.	.	.
LINC00486	MYO19	+/.	-/.	2:32916556	17:36515987	intron	CDS	translocation	0	0	0	489	5	low	.	.	.	.	.	ENSG00000230876	ENSG00000278259	.	.	downstream	downstream	low_entropy	.	.	.
FP236383.3	FP236383.3	+/+	+/+	21:8444649	21:8444635	intron	intron	duplication/ITD	0	0	0	59	27	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	downstream	upstream	duplicates(23),low_entropy(4)	.	.	.
MKI67	MKI67	-/-	-/-	10:128107603	10:128107703	CDS	CDS	duplication	0	0	0	2	3	low	.	.	FHA_domain(100%),KI67R_(NUC007)_repeat(21%),Protein_phosphatase_1_binding(100%)\|KI67R_(NUC007)_repeat(80%)	.	.	ENSG00000148773	ENSG00000148773	.	.	upstream	downstream	hairpin(1)	.	.	.
TRIB1	FP236383.3	+/+	+/+	8:125436054	21:8437275	CDS	intron	translocation	0	0	0	4	16	low	.	.	Protein_kinase_domain(48%)\|	.	.	ENSG00000173334	ENSG00000280441	.	.	downstream	upstream	multimappers(1)	.	.	.
LINC00486	MYH9	+/.	-/.	2:32916556	22:36312152	intron	CDS	translocation	0	0	0	489	5	low	.	.	.	.	.	ENSG00000230876	ENSG00000100345	.	.	downstream	downstream	low_entropy	.	.	.
AC018767.1(124377),AC074052.1(7416)	HLA-DPA1	./-	-/-	16:8500653	6:33069885	intergenic	CDS/splice-site	translocation	0	0	0	0	50	low	.	.	\|Class_II_histocompatibility_antigen__alpha_domain(100%),Immunoglobulin_C1-set_domain(100%)	.	.	.	ENSG00000231389	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	SLC30A5	+/.	+/.	2:32916556	5:69094241	intron	5'UTR	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000145740	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	RAD17	+/.	+/.	2:32916555	5:69414136	intron	CDS	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000152942	.	.	downstream	upstream	low_entropy	.	.	.
POM121	POM121C	+/+	-/-	7:72940993	7:75423203	CDS/splice-site	CDS/splice-site	inversion	0	1	0	5	6	low	.	.	POM121_family(100%)\|	.	.	ENSG00000196313	ENSG00000272391	.	.	downstream	downstream	min_support	.	.	.
GATD1	HLA-B	-/-	-/-	11:773569	6:31356957	CDS	CDS/splice-site	translocation	0	0	0	0	13	low	.	.	\|Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(99%),Immunoglobulin_C1-set_domain(100%),MHC_I_C-terminus(100%)	.	.	ENSG00000177225	ENSG00000234745	.	.	upstream	downstream	duplicates(1)	.	.	.
KANSL1L	FP236383.3	-/+	+/-	2:210171343	21:8444634	5'UTR	intron	translocation	0	0	0	10	46	low	.	.	.	.	.	ENSG00000144445	ENSG00000280441	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	MYH9	+/.	-/.	2:32916555	22:36312152	intron	CDS	translocation	0	0	0	489	5	low	.	.	.	.	.	ENSG00000230876	ENSG00000100345	.	.	downstream	downstream	low_entropy	.	.	.
LINC00486	RAD17	+/.	+/.	2:32916556	5:69414136	intron	CDS	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000152942	.	.	downstream	upstream	low_entropy	.	.	.
CT867976.1(150783),AC138776.1(197097)	COA4	./+	-/-	22:11630426	11:73873290	intergenic	CDS	translocation	0	0	0	0	6	low	.	.	.	.	.	.	ENSG00000181924	.	.	downstream	downstream	mismatches(1)	.	.	.
MELK	MELK	+/+	+/+	9:36665558	9:36665508	CDS	CDS	duplication/ITD	0	0	0	2	2	low	.	.	Protein_kinase_domain(100%)\|Kinase_associated_domain_1(100%)	.	.	ENSG00000165304	ENSG00000165304	.	.	downstream	upstream	duplicates(1),hairpin(1)	.	.	.
LINC00486	TUBA1C	+/.	+/.	2:32916557	12:49269526	intron	CDS	translocation	0	0	0	489	10	low	.	.	.	.	.	ENSG00000230876	ENSG00000167553	.	.	downstream	upstream	low_entropy	.	.	.
ASCC2	ASCC2	-/-	-/-	22:29838204	22:29838209	CDS	CDS	duplication/ITD	0	0	0	0	6	low	.	.	\|CUE_domain(100%)	.	.	ENSG00000100325	ENSG00000100325	.	.	upstream	downstream	hairpin(1)	.	.	.
CDC20	FP671120.4	+/+	+/+	1:43360087	21:8215775	CDS	intron	translocation	0	0	0	7	23	low	.	.	.	.	.	ENSG00000117399	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	HOXB8	+/+	-/+	21:8400415	17:48614723	intron	5'UTR	translocation/5'-5'	0	0	0	105	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000120068	.	.	downstream	upstream	mismatches(1)	.	.	.
THRAP3	FP236383.4	+/+	-/+	1:36301589	21:8393638	CDS	exon	translocation/5'-5'	0	0	0	4	29	low	.	.	THRAP3/BCLAF1_family(100%)\|	.	.	ENSG00000054118	ENSG00000280614	.	.	downstream	upstream	multimappers(1)	.	.	.
YWHAH	FP236383.3	+/+	+/-	22:31956313	21:8394494	CDS	intron	translocation/5'-5'	0	0	0	6	8	low	.	.	14-3-3_protein(34%)\|	.	.	ENSG00000128245	ENSG00000280441	.	.	downstream	downstream	multimappers(1)	.	.	.
NPIPA3	NPIPA1	+/+	+/+	16:14719867	16:14945665	CDS	CDS	deletion/read-through	0	0	1	3	0	low	.	.	Nuclear_pore_complex_interacting_protein_(NPIP)(17%)\|Nuclear_pore_complex_interacting_protein_(NPIP)(72%)	.	.	ENSG00000224712	ENSG00000183426	.	.	downstream	upstream	min_support	.	.	.
AC136443.2	NPIPA2	-/-	+/-	16:14766402	16:14762789	exon	intron	deletion/read-through/5'-5'	0	0	0	2	2	low	.	.	.	.	.	ENSG00000255037	ENSG00000254852	.	.	upstream	downstream	read_through(1)	.	.	.
HLA-DRA	FP236383.4	+/+	-/+	6:32442473	21:8394045	CDS	exon	translocation/5'-5'	0	0	0	20	37	low	.	.	Class_II_histocompatibility_antigen__alpha_domain(10%)\|	.	.	ENSG00000204287	ENSG00000280614	.	.	downstream	upstream	mismatches	.	.	.
CCDC88C	FP671120.4	-/-	+/+	14:91294203	21:8207420	CDS	intron	translocation	1	0	0	6	0	low	.	.	HOOK_domain(100%)\|	.	.	ENSG00000015133	ENSG00000278996	.	.	upstream	upstream	min_support	.	.	.
FP236383.3	EIF4G3	+/+	-/-	21:8444649	1:21176608	intron	intron	translocation	0	0	0	59	0	low	.	.	\|MA3_domain(100%),MIF4G_domain(100%),eIF4-gamma/eIF5/eIF2-epsilon(100%)	.	.	ENSG00000280441	ENSG00000075151	.	.	downstream	downstream	mismatches(1)	.	.	.
FP671120.4	ZFHX3	+/+	-/-	21:8215988	16:72795476	intron	CDS	translocation	0	1	0	51	4	low	.	.	\|Homeodomain(50%)	.	.	ENSG00000278996	ENSG00000140836	.	.	downstream	downstream	min_support	.	.	.
IGLC1	IGLC3	+/+	+/+	22:22895586	22:22906554	CDS	CDS	deletion/read-through	0	0	0	2	153	low	.	.	.	.	.	ENSG00000211675	ENSG00000211679	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
CDC42EP3	LINC00486	-/-	+/-	2:37646077	2:32916556	CDS	intron	deletion/5'-5'	0	0	0	3	489	low	.	.	Cdc42_effector(45%),P21-Rho-binding_domain(100%)\|	.	.	ENSG00000163171	ENSG00000230876	.	.	upstream	downstream	low_entropy	.	.	.
FP671120.4	FP236383.3	+/+	+/+	21:8215999	21:8399040	intron	intron	deletion/read-through	0	1	0	51	17	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	non_coding_neighbors	.	.	.
FP236383.3	BRPF1	+/+	+/+	21:8398309	3:9743046	intron	CDS	translocation	0	0	0	9	5	low	.	.	\|Bromodomain(26%),PWWP_domain(100%)	.	.	ENSG00000280441	ENSG00000156983	.	.	downstream	upstream	multimappers(1)	.	.	.
FP671120.4	ZNF503	+/+	-/-	21:8217379	10:75401369	intron	CDS	translocation	0	0	0	83	0	low	.	.	\|NocA-like_zinc-finger_protein_1(100%)	.	.	ENSG00000278996	ENSG00000165655	.	.	downstream	downstream	mismatches(1)	.	.	.
PABPC1	PABPC1P1	-/-	+/+	8:100709629	4:39973670	CDS	exon	translocation	1	0	0	15	0	low	.	.	RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(98%)\|	.	.	ENSG00000070756	ENSG00000231707	.	.	upstream	upstream	min_support	.	.	.
AL590559.1(93234),RN7SL392P(2151)	DHX34	./+	+/+	1:67654680	19:47353001	intergenic	5'UTR	translocation	0	0	0	0	17	low	.	.	\|Helicase_associated_domain_(HA2)(100%),Helicase_conserved_C-terminal_domain(100%),Oligonucleotide/oligosaccharide-binding_(OB)-fold(100%)	.	.	.	ENSG00000134815	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
LSP1	LSP1	+/+	+/+	11:1880184	11:1880122	CDS	CDS	duplication/ITD	0	0	0	7	10	low	.	.	\|Caldesmon(100%)	.	.	ENSG00000130592	ENSG00000130592	.	.	downstream	upstream	duplicates(1),hairpin(1)	.	.	.
LINC00486	RPL8	+/.	-/.	2:32916414	8:144791798	intron	CDS	translocation	0	0	0	50	26	low	.	.	.	.	.	ENSG00000230876	ENSG00000161016	.	.	downstream	downstream	low_entropy	.	.	.
BCOR	FP236383.5	-/-	-/+	X:40075040	21:8437842	CDS	exon	translocation/5'-5'	0	0	0	5	29	low	.	.	.	.	.	ENSG00000183337	ENSG00000281181	.	.	upstream	upstream	multimappers(1)	.	.	.
FP236383.3	AP005242.2(4130),AP005242.3(46363)	+/+	./+	21:8444649	18:15010482	intron	intergenic	translocation	0	0	0	59	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	downstream	upstream	mismatches(1)	.	.	.
RABGGTB	LINC00486	+/.	+/.	1:75792280	2:32916553	CDS	intron	translocation	0	0	0	8	489	low	.	.	.	.	.	ENSG00000137955	ENSG00000230876	.	.	upstream	downstream	low_entropy	.	.	.
AC011330.1	PPIP5K1	-/-	-/-	15:43672934	15:43573084	exon	CDS	deletion/read-through	0	0	1	2	4	low	.	.	\|Histidine_phosphatase_superfamily_(branch_2)(13%)	.	.	ENSG00000249839	ENSG00000168781	.	.	upstream	downstream	min_support	.	.	.
PRDM1	FP236383.4	+/+	-/+	6:106107314	21:8393658	CDS	exon	translocation/5'-5'	0	0	0	4	31	low	.	.	C2H2-type_zinc_finger(100%),SET_domain(100%),Zinc_finger__C2H2_type(100%)\|	.	.	ENSG00000057657	ENSG00000280614	.	.	downstream	upstream	multimappers(1)	.	.	.
H3C14	LINC00486	-/.	+/.	1:149840902	2:32916556	CDS	intron	translocation	0	0	0	38	489	low	.	.	.	.	.	ENSG00000203811	ENSG00000230876	.	.	downstream	downstream	low_entropy	.	.	.
LINC00486	PI4K2B	+/.	+/.	2:32916408	4:25234137	intron	5'UTR	translocation	0	0	0	50	14	low	.	.	.	.	.	ENSG00000230876	ENSG00000038210	.	.	downstream	upstream	mismatches	.	.	.
ADA	FP236383.3	-/-	+/+	20:44622829	21:8399132	CDS/splice-site	intron	translocation	0	0	0	7	80	low	.	.	Adenosine_deaminase(74%)\|	.	.	ENSG00000196839	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8217221	21:8444418	intron	intron	deletion/read-through	0	0	0	10	23	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	mismatches	.	.	.
NPIPA9	NPIPA8	-/-	-/-	16:18364594	16:18324407	CDS	CDS	deletion/read-through	0	0	0	7	1	low	.	.	Nuclear_pore_complex_interacting_protein_(NPIP)(21%)\|Nuclear_pore_complex_interacting_protein_(NPIP)(72%)	.	.	ENSG00000233024	ENSG00000214940	.	.	upstream	downstream	multimappers(1)	.	.	.
LINC00486	RPS14	+/+	-/-	2:32916373	5:150446846	intron	CDS	translocation	0	0	0	50	33	low	.	.	\|Ribosomal_protein_S11(49%)	.	.	ENSG00000230876	ENSG00000164587	.	.	downstream	downstream	inconsistently_clipped(1)	.	.	.
FP236383.5	PFN1	-/+	-/-	21:8437908	17:4948429	exon	CDS	translocation/3'-3'	0	0	0	31	31	low	.	.	\|Profilin(100%)	.	.	ENSG00000281181	ENSG00000108518	.	.	downstream	downstream	multimappers(1)	.	.	.
TMEM163	MACC1	-/-	-/-	2:134467112	7:20159808	exon	CDS	translocation	0	0	0	0	4	low	.	.	\|ZU5_domain(100%)	.	.	ENSG00000152128	ENSG00000183742	.	.	upstream	downstream	mismatches(1)	.	.	.
FP236383.3	ZNF704	+/+	-/-	21:8400415	8:80874335	intron	intron	translocation	0	0	0	105	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000164684	.	.	downstream	downstream	mismatches(1)	.	.	.
PTCSC3(32193),AL162511.1(4539)	HLA-C	./-	-/-	14:36208661	6:31270084	intergenic	CDS/splice-site	translocation	0	0	0	0	3	low	.	.	\|MHC_I_C-terminus(100%)	.	.	.	ENSG00000204525	.	.	upstream	downstream	mismatches(1)	.	.	.
RPL18	FP236383.4	-/-	-/+	19:48616130	21:8393968	CDS	exon	translocation/5'-5'	0	0	0	37	31	low	.	.	Ribosomal_protein_60S_L18_and_50S_L18e(65%)\|	.	.	ENSG00000063177	ENSG00000280614	.	.	upstream	upstream	multimappers(1)	.	.	.
LINC00486	AL022311.1	+/.	+/.	2:32916556	22:37877865	intron	exon	translocation	0	0	0	489	8	low	.	.	.	.	.	ENSG00000230876	ENSG00000279738	.	.	downstream	upstream	low_entropy	.	.	.
YBX1	YBX1	+/+	+/+	1:42682601	1:42682590	CDS	CDS	duplication/ITD	0	0	0	10	15	low	.	.	\|'Cold-shock'_DNA-binding_domain(100%)	.	.	ENSG00000065978	ENSG00000065978	.	.	downstream	upstream	low_entropy(1)	.	.	.
FP671120.4	FP236383.3	+/+	+/+	21:8217377	21:8397784	intron	intron	deletion/read-through	0	0	0	83	127	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	RBM6	+/+	+/+	21:8214609	3:49975333	intron	CDS	translocation	0	1	0	35	7	low	.	.	\|G-patch_domain(100%),OCRE_domain(100%)	.	.	ENSG00000278996	ENSG00000004534	.	.	downstream	upstream	min_support	.	.	.
AC092647.5	FP236383.3	+/-	+/-	7:55887600	21:8444634	5'UTR	intron	translocation	0	0	0	1	46	low	.	.	.	.	.	ENSG00000249773	ENSG00000280441	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.4	5_8S_rRNA(1945),FP236383.3(121765)	+/+	./+	21:8218974	21:8258878	intron	intergenic	deletion/read-through	0	0	0	2	281	low	.	.	.	.	.	ENSG00000278996	.	.	.	downstream	upstream	mismatches(1)	.	.	.
PRDM12	FP236383.3	+/+	+/-	9:130681643	21:8444633	CDS	intron	translocation/5'-5'	0	0	0	0	46	low	.	.	Zinc_finger__C2H2_type(100%)\|	.	.	ENSG00000130711	ENSG00000280441	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916556	21:8441973	intron	intron	translocation	0	0	0	489	567	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	downstream	upstream	low_entropy	.	.	.
RPL18	PDE3A	-/-	+/+	19:48616130	12:20551449	CDS	intron	translocation	1	0	0	37	13	low	.	.	Ribosomal_protein_60S_L18_and_50S_L18e(65%)\|3'5'-cyclic_nucleotide_phosphodiesterase(100%)	.	.	ENSG00000063177	ENSG00000172572	.	.	upstream	upstream	min_support	.	.	.
EIF4G2	FP671120.4	-/-	+/+	11:10802353	21:8216153	CDS	intron	translocation	1	0	0	9	47	low	.	.	MIF4G_domain(100%)\|	.	.	ENSG00000110321	ENSG00000278996	.	.	upstream	upstream	min_support	.	.	.
LINC00486	TSNARE1	+/.	-/.	2:32916556	8:142314422	intron	CDS	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000171045	.	.	downstream	downstream	low_entropy	.	.	.
FP671120.4	5_8S_rRNA(3330),FP236383.3(120380)	+/+	./+	21:8216039	21:8260263	intron	intergenic	deletion/read-through	0	0	0	46	57	low	.	.	.	.	.	ENSG00000278996	.	.	.	downstream	upstream	multimappers(2)	.	.	.
5_8S_rRNA(1075)	H2AC18	./+	-/-	14:16056397	1:149842669	intergenic	CDS	translocation	0	0	0	0	70	low	.	.	\|C-terminus_of_histone_H2A(100%),Core_histone_H2A/H2B/H3/H4(93%)	.	.	.	ENSG00000203812	.	.	downstream	downstream	mismatches(1)	.	.	.
AC105052.3	AC093668.1	-/-	-/-	7:102667156	7:102567030	CDS	CDS	deletion/read-through	0	0	1	5	3	low	.	.	.	.	.	ENSG00000267645	ENSG00000270249	.	.	upstream	downstream	min_support	.	.	.
LINC00486	CANX	+/.	+/.	2:32916556	5:179708336	intron	CDS	translocation	0	0	0	489	21	low	.	.	.	.	.	ENSG00000230876	ENSG00000127022	.	.	downstream	upstream	mismatches	.	.	.
IFI44L	IFI44L	+/+	+/+	1:78629785	1:78629730	CDS	CDS	duplication/ITD	0	0	0	4	4	low	.	.	\|50S_ribosome-binding_GTPase(100%)	.	.	ENSG00000137959	ENSG00000137959	.	.	downstream	upstream	duplicates(1),hairpin(1)	.	.	.
NR2C1	NR2C1	-/+	-/-	12:95022298	12:95031382	CDS	CDS	inversion/3'-3'	0	0	0	1	0	low	.	.	\|Ligand-binding_domain_of_nuclear_hormone_receptor(62%)	.	.	ENSG00000120798	ENSG00000120798	.	.	downstream	downstream	hairpin(1)	.	.	.
FP236383.3	PRDM12	+/+	+/-	21:8444649	9:130681628	intron	CDS	translocation/5'-5'	0	0	0	59	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000130711	.	.	downstream	downstream	mismatches(1)	.	.	.
CDC45	FP671120.6	+/+	-/+	22:19483949	21:8210903	CDS	exon	translocation/5'-5'	0	0	1	4	25	low	.	.	CDC45-like_protein(21%)\|	.	.	ENSG00000093009	ENSG00000280800	.	.	downstream	upstream	min_support	.	.	.
LINC00486	MYH9	+/.	-/.	2:32916555	22:36293334	intron	CDS	translocation	0	0	0	489	0	low	.	.	.	.	.	ENSG00000230876	ENSG00000100345	.	.	downstream	downstream	low_entropy	.	.	.
SYNJ1	SYNJ1	-/-	-/-	21:32631619	21:32631624	CDS	CDS	duplication/ITD	0	0	0	0	1	low	.	.	Domain_of_unknown_function_(DUF1866)_(100%),Endonuclease/Exonuclease/phosphatase_family(100%),SacI_homology_domain(100%)\|	.	.	ENSG00000159082	ENSG00000159082	.	.	upstream	downstream	hairpin(1)	.	.	.
FP671120.4	FP236383.3	+/+	+/+	21:8216039	21:8260263	intron	intergenic	deletion/read-through	0	0	0	46	57	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	duplicates(7),multimappers(2)	.	.	.
LINC00486	FOXO1	+/.	-/.	2:32916556	13:40666276	intron	5'UTR	translocation	0	0	0	489	4	low	.	.	.	.	.	ENSG00000230876	ENSG00000150907	.	.	downstream	downstream	mismatches	.	.	.
FP671120.6	PRRC2C	-/+	+/+	21:8210841	1:171577521	exon	CDS	translocation/3'-3'	1	0	0	10	4	low	.	.	.	.	.	ENSG00000280800	ENSG00000117523	.	.	downstream	upstream	min_support	.	.	.
CNNM2	DHX34	+/+	+/+	10:102940393	19:47353001	intron	5'UTR	translocation	0	0	0	0	17	low	.	.	CBS_domain(39%),Cyclin_M_transmembrane_N-terminal_domain(100%)\|Helicase_associated_domain_(HA2)(100%),Helicase_conserved_C-terminal_domain(100%),Oligonucleotide/oligosaccharide-binding_(OB)-fold(100%)	.	.	ENSG00000148842	ENSG00000134815	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
FP671120.4	NOL11(10973),RPSAP67(19087)	+/+	./+	21:8214772	17:67755504	intron	intergenic	translocation	0	0	0	135	0	low	.	.	.	.	.	ENSG00000278996	.	.	.	downstream	upstream	mismatches(1)	.	.	.
U2AF2	FP671120.7	+/+	-/+	19:55669485	21:8254942	CDS	exon	translocation/5'-5'	0	0	0	6	17	low	.	.	RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(70%)\|	.	.	ENSG00000063244	ENSG00000281383	.	.	downstream	upstream	multimappers(1)	.	.	.
AC022384.1	AC022384.1	+/+	+/+	3:10260443	3:10260405	CDS	CDS	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000272410	ENSG00000272410	.	.	downstream	upstream	hairpin(1)	.	.	.
KPNB1	KPNB1	+/+	+/+	17:47657054	17:47656985	CDS	CDS	duplication/ITD	0	0	0	7	9	low	.	.	Importin-beta_N-terminal_domain(100%)\|HEAT-like_repeat(100%)	.	.	ENSG00000108424	ENSG00000108424	.	.	downstream	upstream	duplicates(2),hairpin(2)	.	.	.
FP236383.3	FP671120.4	+/+	+/+	21:8442070	21:8214806	intron	intron	duplication	0	0	0	527	151	low	.	.	.	.	.	ENSG00000280441	ENSG00000278996	.	.	downstream	upstream	homopolymer(2)	.	.	.
ZFHX3	PARP12	-/-	-/-	16:73057987	7:140046917	intron	CDS	translocation	0	0	0	0	14	low	.	.	\|Poly(ADP-ribose)_polymerase_catalytic_domain(100%),WWE_domain(100%)	.	.	ENSG00000140836	ENSG00000059378	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.4	FP671120.4	+/+	+/+	21:8218691	21:8218717	intron	intron	deletion/read-through	0	0	0	38	42	low	.	.	.	.	.	ENSG00000278996	ENSG00000278996	.	.	downstream	upstream	read_through(1)	.	.	.
FP671120.6	CENPF	-/+	+/+	21:8210536	1:214630618	exon	CDS	translocation/3'-3'	0	0	1	21	6	low	.	.	\|Leucine-rich_repeats_of_kinetochore_protein_Cenp-F/LEK1(100%),Rb-binding_domain_of_kinetochore_protein_Cenp-F/LEK1(100%)	.	.	ENSG00000280800	ENSG00000117724	.	.	downstream	upstream	min_support	.	.	.
IGLJ3	IGLC3	+/+	+/+	22:22905025	22:22906342	CDS/splice-site	CDS/splice-site	deletion/read-through	0	0	0	13	28	low	.	.	.	.	.	ENSG00000211678	ENSG00000211679	.	.	downstream	upstream	read_through(8)	.	.	.
ISCU	ISCU	+/+	+/+	12:108568997	12:108567202	3'UTR	CDS	duplication	1	0	0	3	0	low	.	.	NifU-like_N_terminal_domain(100%)\|NifU-like_N_terminal_domain(32%)	.	.	ENSG00000136003	ENSG00000136003	.	.	downstream	upstream	intragenic_exonic	.	.	.
FP671120.4	RNF213	+/+	+/+	21:8218551	17:80375755	intron	intron	translocation	0	1	0	25	9	low	.	.	.	.	.	ENSG00000278996	ENSG00000173821	.	.	downstream	upstream	min_support	.	.	.
LINC00486	FAM149B1	+/.	+/.	2:32916556	10:73177859	intron	CDS	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000138286	.	.	downstream	upstream	low_entropy	.	.	.
FP671120.4	FP236383.3	+/+	+/+	21:8216039	21:8399068	intron	intron	deletion/read-through	0	0	0	46	64	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	duplicates(3),multimappers(3)	.	.	.
PTPN4	TBC1D1	+/+	+/+	2:119853922	4:38103066	intron	CDS	translocation	0	0	1	1	2	low	.	.	FERM_N-terminal_domain_(21%)\|Rab-GTPase-TBC_domain(91%)	.	.	ENSG00000088179	ENSG00000065882	.	.	downstream	upstream	min_support	.	.	.
HLA-B	HLA-C	-/-	-/-	6:31356688	6:31271348	CDS/splice-site	CDS/splice-site	deletion/read-through	0	1	0	14	31	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(50%)\|Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(49%),Immunoglobulin_C1-set_domain(100%),MHC_I_C-terminus(100%)	.	.	ENSG00000234745	ENSG00000204525	.	.	upstream	downstream	min_support,mismatches(6)	.	.	.
DENND4B	DENND4B	-/-	-/-	1:153934794	1:153934802	CDS	CDS	duplication/ITD	0	0	0	4	4	low	.	.	DENN_(AEX-3)_domain(100%),dDENN_domain(100%),uDENN_domain(100%)\|	.	.	ENSG00000198837	ENSG00000198837	.	.	upstream	downstream	low_entropy(1)	.	.	.
FP236383.3	H2AC19	+/+	+/+	21:8438711	1:149851144	intron	CDS	translocation	0	0	0	8	72	low	.	.	\|C-terminus_of_histone_H2A(100%),Core_histone_H2A/H2B/H3/H4(92%)	.	.	ENSG00000280441	ENSG00000272196	.	.	downstream	upstream	multimappers(1)	.	.	.
LINC00486	RAB21	+/.	+/.	2:32916557	12:71755060	intron	5'UTR	translocation	0	0	0	489	6	low	.	.	.	.	.	ENSG00000230876	ENSG00000080371	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916416	21:8399089	intron	intron	translocation/3'-3'	0	0	0	219	77	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	upstream	upstream	duplicates	.	.	.
SCIN	DHX34	+/+	+/+	7:12597498	19:47353001	intron	5'UTR	translocation	0	0	0	0	17	low	.	.	Gelsolin_repeat(23%)\|Helicase_associated_domain_(HA2)(100%),Helicase_conserved_C-terminal_domain(100%),Oligonucleotide/oligosaccharide-binding_(OB)-fold(100%)	.	.	ENSG00000006747	ENSG00000134815	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
FP236383.4	TNRC6A	-/+	+/+	21:8393742	16:24791661	exon	CDS	translocation/3'-3'	0	0	0	22	5	low	.	.	\|Argonaute_hook(94%),M_domain_of_GW182(100%),TNRC6-PABC_binding_domain(100%)	.	.	ENSG00000280614	ENSG00000090905	.	.	downstream	upstream	multimappers(1)	.	.	.
LINC00486	TBC1D7	+/.	-/.	2:32916441	6:13307774	intron	intron	translocation	0	0	0	219	1	low	.	.	.	.	.	ENSG00000230876	ENSG00000145979	.	.	downstream	downstream	low_entropy	.	.	.
RPL13A	FP671120.4	+/+	+/+	19:49490805	21:8217733	CDS	intron	translocation	1	0	0	55	19	low	.	.	Ribosomal_protein_L13(85%)\|	.	.	ENSG00000142541	ENSG00000278996	.	.	downstream	upstream	min_support	.	.	.
5_8S_rRNA(1523),FP236383.3(122187)	LGALS9	./+	+/+	21:8258456	17:27640736	intergenic	CDS/splice-site	translocation	0	0	0	26	14	low	.	.	\|Galactoside-binding_lectin(67%)	.	.	.	ENSG00000168961	.	.	downstream	upstream	multimappers(1)	.	.	.
HLA-DQA1	HLA-DQA2	+/+	+/+	6:32642115	6:32745939	CDS	CDS	deletion/read-through	0	0	1	6	4	low	.	.	Class_II_histocompatibility_antigen__alpha_domain(100%),Immunoglobulin_C1-set_domain(54%)\|Immunoglobulin_C1-set_domain(44%)	.	.	ENSG00000196735	ENSG00000237541	.	.	downstream	upstream	min_support,mismatches(1)	.	.	.
ERG	AC019257.8	-/-	+/+	21:38445410	8:1836682	CDS	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000157554	ENSG00000283239	.	.	upstream	upstream	mismatches(1)	.	.	.
AC011330.1	PPIP5K1	-/-	-/-	15:43678646	15:43581064	exon	CDS	deletion/read-through	0	0	1	3	4	low	.	.	\|Histidine_phosphatase_superfamily_(branch_2)(100%)	.	.	ENSG00000249839	ENSG00000168781	.	.	upstream	downstream	min_support	.	.	.
FP671120.4	ZNF704	+/+	-/-	21:8217379	8:80874336	intron	intron	translocation	0	0	0	83	0	low	.	.	.	.	.	ENSG00000278996	ENSG00000164684	.	.	downstream	downstream	mismatches(1)	.	.	.
KANSL1L	FP671120.4	-/+	+/-	2:210171343	21:8217364	5'UTR	intron	translocation	0	0	0	10	83	low	.	.	.	.	.	ENSG00000144445	ENSG00000278996	.	.	downstream	downstream	mismatches(1)	.	.	.
RPL18	FP671120.7	-/-	-/+	19:48616130	21:8255141	CDS	exon	translocation/5'-5'	0	0	0	37	27	low	.	.	Ribosomal_protein_60S_L18_and_50S_L18e(65%)\|	.	.	ENSG00000063177	ENSG00000281383	.	.	upstream	upstream	multimappers(1)	.	.	.
YWHAH	FP671120.4	+/+	+/-	22:31956313	21:8211459	CDS	intron	translocation/5'-5'	1	0	0	6	6	low	.	.	14-3-3_protein(34%)\|	.	.	ENSG00000128245	ENSG00000278996	.	.	downstream	downstream	min_support	.	.	.
NPIPA9	AC126755.5	-/-	-/-	16:18364594	16:18324407	CDS	exon	deletion/read-through	0	0	0	7	1	low	.	.	Nuclear_pore_complex_interacting_protein_(NPIP)(21%)\|	.	.	ENSG00000233024	ENSG00000285628	.	.	upstream	downstream	multimappers(1)	.	.	.
PPIAP22	FP236383.4	+/+	-/+	21:18857953	21:8394099	exon	exon	duplication/5'-5'	0	0	0	8	25	low	.	.	.	.	.	ENSG00000198618	ENSG00000280614	.	.	downstream	upstream	multimappers(1)	.	.	.
NOP56	NOP56	+/+	+/+	20:2657154	20:2657090	CDS	CDS	duplication/ITD	0	0	0	6	8	low	.	.	NOP5NT_(NUC127)_domain(100%),snoRNA_binding_domain__fibrillarin(100%)\|	.	.	ENSG00000101361	ENSG00000101361	.	.	downstream	upstream	duplicates(1),hairpin(1)	.	.	.
LINC00486	GOLPH3L	+/+	-/-	2:32916373	1:150694708	intron	CDS	translocation	0	0	0	50	6	low	.	.	\|Golgi_phosphoprotein_3_(GPP34)(100%)	.	.	ENSG00000230876	ENSG00000143457	.	.	downstream	downstream	inconsistently_clipped(1)	.	.	.
RPL29	AC018475.1	-/-	-/-	3:51993992	12:95467747	CDS	exon	translocation	0	0	0	31	0	low	.	.	Ribosomal_L29e_protein_family(100%)\|	.	.	ENSG00000162244	ENSG00000241556	.	.	upstream	downstream	multimappers(1)	.	.	.
RPL23A	FP671120.4	+/+	+/+	17:28722812	21:8218702	CDS	intron	translocation	0	0	0	49	42	low	.	.	Ribosomal_protein_L23(40%),Ribosomal_protein_L23__N-terminal_domain(100%)\|	.	.	ENSG00000198242	ENSG00000278996	.	.	downstream	upstream	multimappers(1)	.	.	.
FP236383.3	CELF1	+/+	-/-	21:8441592	11:47478994	intron	intron	translocation	0	1	0	8	2	low	.	.	\|RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(34%)	.	.	ENSG00000280441	ENSG00000149187	.	.	downstream	downstream	min_support	.	.	.
TUBB4BP5(159573),ANXA5(56406)	HLA-DPA1	./+	-/-	4:121611540	6:33069885	intergenic	CDS/splice-site	translocation	0	0	0	0	50	low	.	.	\|Class_II_histocompatibility_antigen__alpha_domain(100%),Immunoglobulin_C1-set_domain(100%)	.	.	.	ENSG00000231389	.	.	downstream	downstream	mismatches(1)	.	.	.
HLA-B	RNA5-8SN1	-/-	+/+	6:31271232	21:8439901	intergenic	exon	translocation	0	0	0	36	4	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%),Immunoglobulin_C1-set_domain(100%),MHC_I_C-terminus(100%)\|	.	.	ENSG00000234745	ENSG00000278189	.	.	upstream	upstream	mismatches	.	.	.
FP671120.4	5_8S_rRNA(2028),FP236383.3(121682)	+/+	./+	21:8214734	21:8258961	intron	intergenic	deletion/read-through	0	0	0	81	521	low	.	.	.	.	.	ENSG00000278996	.	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
LINC01121	DHX34	-/-	+/+	2:45261417	19:47353001	intron	5'UTR	translocation	0	0	0	0	17	low	.	.	\|Helicase_associated_domain_(HA2)(100%),Helicase_conserved_C-terminal_domain(100%),Oligonucleotide/oligosaccharide-binding_(OB)-fold(100%)	.	.	ENSG00000205054	ENSG00000134815	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916561	21:8441346	intron	intron	translocation	0	0	0	480	18	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	downstream	upstream	mismatches	.	.	.
FP236383.3	MOB1A	+/+	-/-	21:8401646	2:74178783	intron	5'UTR	translocation	0	1	0	31	1	low	.	.	\|Mob1/phocein_family(100%)	.	.	ENSG00000280441	ENSG00000114978	.	.	downstream	downstream	min_support	.	.	.
RPL29	RPL29	-/-	-/-	3:51993838	3:51993843	CDS	CDS	duplication/ITD	0	0	0	35	40	low	.	.	Ribosomal_L29e_protein_family(100%)\|	.	.	ENSG00000162244	ENSG00000162244	.	.	upstream	downstream	hairpin(3)	.	.	.
LINC00486	5_8S_rRNA(1376),FP236383.3(122334)	+/.	./.	2:32916561	21:8258309	intron	intergenic	translocation	0	0	0	480	13	low	.	.	.	.	.	ENSG00000230876	.	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	EIF6	+/.	-/.	2:32916556	20:35279685	intron	CDS	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000242372	.	.	downstream	downstream	low_entropy	.	.	.
RPL18	FP671120.6	-/-	-/+	19:48616130	21:8210933	CDS	exon	translocation/5'-5'	0	0	0	37	27	low	.	.	Ribosomal_protein_60S_L18_and_50S_L18e(65%)\|	.	.	ENSG00000063177	ENSG00000280800	.	.	upstream	upstream	multimappers(1)	.	.	.
LINC00486	FP671120.4	+/.	+/.	2:32916555	21:8215649	intron	intron	translocation	0	0	0	489	21	low	.	.	.	.	.	ENSG00000230876	ENSG00000278996	.	.	downstream	upstream	low_entropy	.	.	.
AC022384.1	TATDN2	+/+	+/+	3:10260443	3:10260405	CDS	CDS	duplication	0	0	0	1	1	low	.	.	\|TatD_related_DNase(100%)	.	.	ENSG00000272410	ENSG00000157014	.	.	downstream	upstream	hairpin(1)	.	.	.
SETD3	SPECC1L-ADORA2A	-/+	+/+	14:99420983	22:24302262	intron	CDS	translocation/3'-3'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000183576	ENSG00000258555	.	.	downstream	upstream	homopolymer(1)	.	.	.
FP671120.4	FP236383.3	+/+	+/+	21:8215999	21:8443269	intron	intron	deletion/read-through	0	0	0	51	29	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	duplicates(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916561	21:8397126	intron	intron	translocation	0	0	0	480	16	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	RPL3	+/.	-/.	2:32916556	22:39317629	intron	CDS	translocation	0	0	0	489	39	low	.	.	.	.	.	ENSG00000230876	ENSG00000100316	.	.	downstream	downstream	low_entropy	.	.	.
LINC00486	SLC5A3	+/.	+/.	2:32916569	21:34096025	intron	CDS	translocation	0	0	0	480	1	low	.	.	.	.	.	ENSG00000230876	ENSG00000198743	.	.	downstream	upstream	low_entropy	.	.	.
AC137803.1	NPIPA5	+/+	-/+	16:15362670	16:15366283	exon	intron	deletion/read-through/5'-5'	0	0	0	1	1	low	.	.	.	.	.	ENSG00000277770	ENSG00000183793	.	.	downstream	upstream	read_through(1)	.	.	.
NTRK1	LINC00486	+/.	+/.	1:156874941	2:32916552	CDS	intron	translocation	0	0	0	7	489	low	.	.	.	.	.	ENSG00000198400	ENSG00000230876	.	.	upstream	downstream	mismatches	.	.	.
FP671120.4	FP236383.3	+/+	+/+	21:8215999	21:8260235	intron	intergenic	deletion/read-through	0	0	0	51	31	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	duplicates(1)	.	.	.
GOLGB1	GOLGB1	-/-	-/-	3:121697024	3:121697395	CDS	CDS	duplication	1	0	0	2	1	low	.	.	.	.	.	ENSG00000173230	ENSG00000173230	.	.	upstream	downstream	intragenic_exonic	.	.	.
RPL14P1	RPL14	+/+	+/+	12:62965801	3:40462047	exon	CDS	translocation	3	3	0	20	53	low	.	.	.	.	.	ENSG00000139239	ENSG00000188846	.	.	downstream	upstream	blacklist	.	.	.
5_8S_rRNA(1086),DUX4L32(20492)	H2AC19	./-	+/+	20:29298332	1:149851143	intergenic	CDS	translocation	0	0	0	0	72	low	.	.	\|C-terminus_of_histone_H2A(100%),Core_histone_H2A/H2B/H3/H4(93%)	.	.	.	ENSG00000272196	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	SCFD1	+/-	+/+	21:8398983	14:30670299	intron	CDS	translocation/3'-3'	0	0	0	19	4	low	.	.	\|Sec1_family(56%)	.	.	ENSG00000280441	ENSG00000092108	.	.	upstream	upstream	multimappers(1)	.	.	.
FP236383.3	GAPDH	+/-	+/+	21:8401220	12:6538116	intron	CDS	translocation/3'-3'	0	0	0	5	49	low	.	.	.	.	.	ENSG00000280441	ENSG00000111640	.	.	upstream	upstream	mismatches(1)	.	.	.
ELAPOR2	SMG1P1	-/+	+/+	7:86917089	16:22454708	intron	exon	translocation/3'-3'	0	1	0	0	3	low	.	.	.	.	.	ENSG00000164659	ENSG00000237296	.	.	downstream	upstream	min_support	.	.	.
FP236383.3	FP236383.3	+/+	+/+	21:8400415	21:8400401	intron	intron	duplication/ITD	0	0	0	105	73	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	downstream	upstream	low_entropy(2),merge_adjacent	.	.	.
ACTG1	POTEF	-/-	-/-	17:81512006	2:130075181	CDS	CDS	translocation	0	0	0	53	0	low	.	.	Actin(22%)\|Actin(83%)	.	.	ENSG00000184009	ENSG00000196604	.	.	upstream	downstream	mismatches(1)	.	.	.
PPM1F-AS1	FP236383.3	+/-	+/+	22:21964302	21:8443361	exon	intron	translocation/3'-3'	0	0	0	0	61	low	.	.	.	.	.	ENSG00000224086	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
FP671120.4	FP236383.3	+/+	+/+	21:8215191	21:8442045	intron	intron	deletion/read-through	0	0	0	11	519	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	duplicates(1)	.	.	.
VPS51	FP671120.3(4032),FP671120.7(411)	+/+	./+	11:65110721	21:8254181	CDS	intergenic	translocation	0	0	0	6	6	low	.	.	Vps51/Vps67(100%)\|	.	.	ENSG00000149823	.	.	.	downstream	upstream	multimappers(1)	.	.	.
HLA-C	DCAF12L1(146340),MTCYBP38(29950)	-/-	./-	6:31270454	X:126699154	CDS	intergenic	translocation	0	0	0	16	0	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%),Immunoglobulin_C1-set_domain(1%)\|	.	.	ENSG00000204525	.	.	.	upstream	downstream	mismatches(1)	.	.	.
PRKDC	FP671120.4	-/-	+/+	8:47879521	21:8214226	CDS	intron	translocation	1	0	0	5	17	low	.	.	.	.	.	ENSG00000253729	ENSG00000278996	.	.	upstream	upstream	min_support	.	.	.
LINC00486	FP671120.4	+/.	+/.	2:32916561	21:8214088	intron	intron	translocation	0	0	0	480	13	low	.	.	.	.	.	ENSG00000230876	ENSG00000278996	.	.	downstream	upstream	mismatches	.	.	.
PPM1F-AS1	5_8S_rRNA(3388),FP236383.3(120322)	+/-	./+	22:21964302	21:8260321	exon	intergenic	translocation	0	0	0	0	62	low	.	.	.	.	.	ENSG00000224086	.	.	.	upstream	upstream	multimappers(1)	.	.	.
ANKHD1-EIF4EBP3	ANKHD1	+/+	+/+	5:140524178	5:140524120	CDS	CDS	duplication	0	0	0	2	2	low	.	.	Ankyrin_repeats_(3_copies)(100%)\|KH_domain(100%)	.	.	ENSG00000254996	ENSG00000131503	.	.	downstream	upstream	hairpin(1)	.	.	.
AC134669.1	AC134669.1	-/-	-/-	17:31305223	17:31305290	3'UTR	3'UTR	duplication/ITD	0	0	0	7	6	low	.	.	Ectropic_viral_integration_site_2A_protein_(EVI2A)(100%)\|	.	.	ENSG00000265118	ENSG00000265118	.	.	upstream	downstream	hairpin(1),inconsistently_clipped(1)	.	.	.
HNRNPR	5_8S_rRNA(2876),FP236383.3(120834)	-/-	./+	1:23323561	21:8259809	CDS	intergenic	translocation	0	0	0	7	16	low	.	.	Heterogeneous_nuclear_ribonucleoprotein_Q_acidic_domain(100%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(29%)\|	.	.	ENSG00000125944	.	.	.	upstream	upstream	multimappers(1)	.	.	.
U2AF2	FP236383.3	+/+	+/+	19:55662566	21:8444995	CDS	intron	translocation	1	0	0	9	17	low	.	.	RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(16%)\|	.	.	ENSG00000063244	ENSG00000280441	.	.	downstream	upstream	min_support	.	.	.
RPL14	RASA3	+/+	-/-	3:40462078	13:114014954	CDS	intron	translocation	0	0	0	66	0	low	.	.	Ribosomal_protein_L14(100%)\|BTK_motif(100%),GTPase-activator_protein_for_Ras-like_GTPase(31%),PH_domain(100%)	.	.	ENSG00000188846	ENSG00000185989	.	.	downstream	downstream	homopolymer(1)	.	.	.
FP671120.4	FP236383.3	+/+	+/+	21:8216036	21:8399068	intron	intron	deletion/read-through	0	0	0	46	64	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	duplicates(3),mismatches(1),multimappers(3)	.	.	.
5_8S_rRNA(2005),FP236383.3(121705)	FP236383.3	./-	+/+	21:8258938	21:8445117	intergenic	intron	inversion	0	0	0	466	25	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	low_entropy(1)	.	.	.
C19orf73	FP236383.3	-/-	+/+	19:49119098	21:8442992	5'UTR	intron	translocation	0	0	0	0	19	low	.	.	.	.	.	ENSG00000221916	ENSG00000280441	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
TET1	TET1	+/+	+/+	10:68647005	10:68644698	CDS/splice-site	CDS/splice-site	duplication/non-canonical_splicing	0	1	0	0	1	low	.	.	CXXC_zinc_finger_domain(100%)\|Oxygenase_domain_of_the_2OGFeDO_superfamily_(100%)	.	.	ENSG00000138336	ENSG00000138336	.	.	downstream	upstream	min_support	.	.	.
SLC12A7	PARP12	-/-	-/-	5:1069222	7:140046917	intron	CDS	translocation	0	0	0	0	14	low	.	.	Amino_acid_permease(100%),Solute_carrier_family_12(10%)\|Poly(ADP-ribose)_polymerase_catalytic_domain(100%),WWE_domain(100%)	.	.	ENSG00000113504	ENSG00000059378	.	.	upstream	downstream	mismatches(1)	.	.	.
POLR2J2	POLR2J3	-/-	-/-	7:102667156	7:102567030	CDS	CDS	deletion/read-through	0	0	1	5	3	low	.	.	RNA_polymerase_Rpb3/Rpb11_dimerisation_domain(73%)\|	.	.	ENSG00000228049	ENSG00000168255	.	.	upstream	downstream	min_support	.	.	.
FP236383.3	FP236383.3	+/+	+/+	21:8444649	21:8444641	intron	intron	duplication/ITD	0	0	0	59	37	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	downstream	upstream	low_entropy(1)	.	.	.
IFI16	IFI16	+/+	+/+	1:159018358	1:159018286	CDS	CDS	duplication/ITD	0	0	0	2	3	low	.	.	HIN-200/IF120x_domain(7%),PAAD/DAPIN/Pyrin_domain(100%)\|HIN-200/IF120x_domain(99%)	.	.	ENSG00000163565	ENSG00000163565	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
RBM34	ARID4B	-/-	-/-	1:235160594	1:235160919	CDS	3'UTR	duplication	0	0	0	3	3	low	.	.	.	.	.	ENSG00000188739	ENSG00000054267	.	.	upstream	downstream	hairpin(1)	.	.	.
LINC00486	FP671120.4	+/.	+/.	2:32916570	21:8218666	intron	intron	translocation	0	0	0	480	34	low	.	.	.	.	.	ENSG00000230876	ENSG00000278996	.	.	downstream	upstream	low_entropy	.	.	.
RPS21	FP236383.4	+/+	-/+	20:62387627	21:8393490	CDS	exon	translocation/5'-5'	0	0	0	25	23	low	.	.	Ribosomal_protein_S21e_(25%)\|	.	.	ENSG00000171858	ENSG00000280614	.	.	downstream	upstream	multimappers(1)	.	.	.
FP671120.7	TNRC6A	-/+	+/+	21:8254915	16:24791661	exon	CDS	translocation/3'-3'	0	0	0	24	5	low	.	.	\|Argonaute_hook(94%),M_domain_of_GW182(100%),TNRC6-PABC_binding_domain(100%)	.	.	ENSG00000281383	ENSG00000090905	.	.	downstream	upstream	multimappers(1)	.	.	.
ANKRD44	FP671120.4	-/+	+/+	2:197282855	21:8218713	intron	intron	translocation/3'-3'	0	0	0	0	42	low	.	.	.	.	.	ENSG00000065413	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
SLMAP	SLMAP	+/+	+/+	3:57864636	3:57864563	CDS	CDS	duplication/ITD	0	0	0	1	1	low	.	.	FHA_domain(100%)\|	.	.	ENSG00000163681	ENSG00000163681	.	.	downstream	upstream	duplicates(1),hairpin(1)	.	.	.
PTPN22	PTPN22	-/-	-/-	1:113838211	1:113838576	CDS	CDS	duplication	1	0	0	1	1	low	.	.	Protein-tyrosine_phosphatase(100%)\|	.	.	ENSG00000134242	ENSG00000134242	.	.	upstream	downstream	min_support	.	.	.
MT-RNR2	FP236383.4	+/+	-/+	MT:2734	21:8393508	exon	exon	translocation/5'-5'	0	0	0	.	24	low	.	.	.	.	.	ENSG00000210082	ENSG00000280614	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
LINC00486	5_8S_rRNA(2008),FP236383.3(121702)	+/.	./.	2:32916555	21:8258941	intron	intergenic	translocation	0	0	0	489	511	low	.	.	.	.	.	ENSG00000230876	.	.	.	downstream	upstream	mismatches	.	.	.
HLA-B	RNA5-8SN3	-/-	+/+	6:31271232	21:8395685	intergenic	exon	translocation	0	0	0	36	4	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%),Immunoglobulin_C1-set_domain(100%),MHC_I_C-terminus(100%)\|	.	.	ENSG00000234745	ENSG00000275215	.	.	upstream	upstream	mismatches	.	.	.
BLOC1S1	AC009779.3	+/+	+/+	12:55719196	12:55719134	CDS	CDS	duplication	0	0	0	2	1	low	.	.	GCN5-like_protein_1_(GCN5L1)(67%)\|GCN5-like_protein_1_(GCN5L1)(36%)	.	.	ENSG00000135441	ENSG00000258311	.	.	downstream	upstream	duplicates(1),hairpin(1)	.	.	.
MAD1L1	AC069288.1	-/-	-/-	7:1957629	7:1957719	CDS/splice-site	3'UTR/splice-site	duplication	0	0	0	1	5	low	.	.	Mitotic_checkpoint_protein(72%)\|	.	.	ENSG00000002822	ENSG00000286192	.	.	upstream	downstream	duplicates(1),hairpin(1)	.	.	.
LINC00486	CEBPZ	+/.	-/.	2:32916556	2:37227774	intron	CDS	inversion	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000115816	.	.	downstream	downstream	low_entropy	.	.	.
FP671120.6	PMVK	-/+	-/-	21:8211156	1:154929160	exon	CDS	translocation/3'-3'	0	1	0	20	4	low	.	.	\|Phosphomevalonate_kinase_(58%)	.	.	ENSG00000280800	ENSG00000163344	.	.	downstream	downstream	min_support	.	.	.
TTF2	PLCG2	+/+	+/-	1:117101562	16:81850312	3'UTR/splice-site	intron	translocation/5'-5'	0	0	0	33	0	low	.	.	GRF_zinc_finger(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%)\|	.	.	ENSG00000116830	ENSG00000197943	.	.	downstream	downstream	mismatches(1)	.	.	.
CR392039.1(814),CR392039.3(8252)	CCT3	./+	-/-	21:8988244	1:156318895	intergenic	CDS	translocation	0	0	0	8	5	low	.	.	\|TCP-1/cpn60_chaperonin_family(56%)	.	.	.	ENSG00000163468	.	.	downstream	downstream	multimappers(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916555	21:8441983	intron	intron	translocation	0	0	0	489	563	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	downstream	upstream	low_entropy	.	.	.
FP671120.4	FP236383.3	+/+	+/+	21:8258873	21:8441913	intergenic	intron	deletion/read-through	0	0	0	103	342	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	duplicates(1)	.	.	.
LINC00486	PAICS	+/.	+/.	2:32916562	4:56450828	intron	exon	translocation	0	0	0	480	1	low	.	.	.	.	.	ENSG00000230876	ENSG00000128050	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	TPI1	+/.	+/.	2:32916555	12:6870392	intron	3'UTR	translocation	0	0	0	489	5	low	.	.	.	.	.	ENSG00000230876	ENSG00000111669	.	.	downstream	upstream	low_entropy	.	.	.
FP236383.3	HMGB1P5	+/+	+/+	21:8442589	3:22382114	intron	exon	translocation	0	0	0	10	6	low	.	.	.	.	.	ENSG00000280441	ENSG00000132967	.	.	downstream	upstream	multimappers(1)	.	.	.
SLC35B1	FP236383.3	-/-	+/+	17:49707799	21:8442685	CDS	intron	translocation	0	0	0	1	11	low	.	.	.	.	.	ENSG00000121073	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
MT2A	IGLV3-2(5736),IGLV3-1(1530)	+/+	./-	16:56608685	22:22879176	exon/splice-site	intergenic	translocation	0	0	0	8	0	low	.	.	Metallothionein(14%)\|	.	.	ENSG00000125148	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	PAICS	+/.	+/.	2:32916562	4:56459372	intron	CDS	translocation	0	0	0	480	9	low	.	.	.	.	.	ENSG00000230876	ENSG00000128050	.	.	downstream	upstream	mismatches	.	.	.
AC119403.1	ASCC2	-/-	-/-	19:2926375	22:29838228	intron	CDS	translocation	0	0	0	0	5	low	.	.	\|CUE_domain(100%)	.	.	ENSG00000253392	ENSG00000100325	.	.	upstream	downstream	mismatches(1)	.	.	.
AFMID	TRABD2A	+/+	-/+	17:78191060	2:84833897	CDS/splice-site	exon	translocation/5'-5'	0	0	0	3	0	low	.	.	.	.	.	ENSG00000183077	ENSG00000186854	.	.	downstream	upstream	mismatches(1)	.	.	.
PHF21A(125),AC024475.3(1452)	PARP12	./+	-/-	11:46121579	7:140046917	intergenic	CDS	translocation	0	0	0	0	14	low	.	.	\|Poly(ADP-ribose)_polymerase_catalytic_domain(100%),WWE_domain(100%)	.	.	.	ENSG00000059378	.	.	downstream	downstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/+	+/+	21:8212391	21:8400399	intron	intron	deletion/read-through	0	0	0	0	87	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
RERE	ZBTB2	-/-	-/+	1:8358574	6:151390925	CDS	intron	translocation/5'-5'	0	1	0	1	1	low	.	.	Atrophin-1_family(75%),BAH_domain(100%),ELM2_domain(100%),GATA_zinc_finger(100%)\|	.	.	ENSG00000142599	ENSG00000181472	.	.	upstream	upstream	min_support	.	.	.
HLA-B	RNA5-8SN2	-/-	+/+	6:31271232	21:8212650	intergenic	exon	translocation	0	0	0	36	2	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%),Immunoglobulin_C1-set_domain(100%),MHC_I_C-terminus(100%)\|	.	.	ENSG00000234745	ENSG00000278233	.	.	upstream	upstream	mismatches	.	.	.
AC138932.3	NPIPA3	-/-	+/-	16:14953015	16:14723669	exon	intron	deletion/read-through/5'-5'	0	0	0	3	3	low	.	.	.	.	.	ENSG00000273804	ENSG00000224712	.	.	upstream	downstream	multimappers(1)	.	.	.
CARM1	CBFA2T3	+/-	-/+	19:10871584	16:88894833	5'UTR	intron	translocation	0	0	0	1	0	low	.	.	.	.	.	ENSG00000142453	ENSG00000129993	.	.	upstream	upstream	low_entropy(1)	.	.	.
AC136443.2	NPIPA3	-/-	+/-	16:14766402	16:14723669	exon	intron	deletion/read-through/5'-5'	0	1	0	2	3	low	.	.	.	.	.	ENSG00000255037	ENSG00000224712	.	.	upstream	downstream	min_support	.	.	.
LINC00486	RPS3	+/.	+/.	2:32916555	11:75404694	intron	CDS	translocation	0	0	0	489	22	low	.	.	.	.	.	ENSG00000230876	ENSG00000149273	.	.	downstream	upstream	low_entropy	.	.	.
HLA-A	HLA-A	+/+	+/+	6:29943026	6:29943268	CDS/splice-site	CDS/splice-site	deletion/read-through	0	0	0	5	12	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(50%)\|Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(49%),Immunoglobulin_C1-set_domain(100%),MHC_I_C-terminus(100%)	.	.	ENSG00000206503	ENSG00000206503	.	.	downstream	upstream	read_through(1)	.	.	.
LINC00486	ACADVL	+/.	+/.	2:32916555	17:7220032	intron	CDS	translocation	0	0	0	489	0	low	.	.	.	.	.	ENSG00000230876	ENSG00000072778	.	.	downstream	upstream	mismatches	.	.	.
AL450338.2(10951),RPL7P27(77201)	ABCC1	./+	+/+	6:86009214	16:16007816	intergenic	CDS/splice-site	translocation	0	0	0	0	8	low	.	.	\|ABC_transporter(100%),ABC_transporter_transmembrane_region(100%)	.	.	.	ENSG00000103222	.	.	downstream	upstream	mismatches(1)	.	.	.
GPATCH8	FP671120.4	-/-	+/+	17:44397883	21:8215614	CDS	intron	translocation	0	0	0	4	13	low	.	.	G-patch_domain(100%),Zinc-finger_double-stranded_RNA-binding(100%)\|	.	.	ENSG00000186566	ENSG00000278996	.	.	upstream	upstream	multimappers(1)	.	.	.
AC008012.1	CCND2	+/+	+/+	12:4276107	12:4274221	CDS	CDS	duplication	0	1	0	14	0	low	.	.	\|Cyclin__C-terminal_domain(100%),Cyclin__N-terminal_domain(72%)	.	.	ENSG00000285901	ENSG00000118971	.	.	downstream	upstream	intragenic_exonic	.	.	.
AF241726.1	FP671120.4	+/+	+/-	X:38561534	21:8217364	intron	intron	translocation/5'-5'	0	0	0	0	83	low	.	.	Vitamin_K-dependent_carboxylation/gamma-carboxyglutamic_(GLA)_domain(100%)\|	.	.	ENSG00000250349	ENSG00000278996	.	.	downstream	downstream	inconsistently_clipped(1)	.	.	.
HNRNPA1P48	HNRNPA1	+/+	+/+	16:51646508	12:54282145	CDS	CDS	translocation	1	0	0	4	25	low	.	.	RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)\|Nuclear_factor_hnRNPA1(100%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(43%)	.	.	ENSG00000224578	ENSG00000135486	.	.	downstream	upstream	min_support	.	.	.
PRRC2C	PRRC2C	+/+	+/+	1:171532756	1:171532631	CDS	CDS	duplication	0	0	0	4	4	low	.	.	BAT2_N-terminus(100%)\|	.	.	ENSG00000117523	ENSG00000117523	.	.	downstream	upstream	hairpin(1)	.	.	.
AC007192.1	AC007192.1	+/+	+/+	19:18175647	19:18175146	3'UTR	3'UTR	duplication	0	1	0	4	6	low	.	.	.	.	.	ENSG00000268173	ENSG00000268173	.	.	downstream	upstream	min_support	.	.	.
C11orf24	C11orf24	-/-	-/-	11:68261864	11:68261979	CDS	CDS	duplication	1	0	0	1	0	low	.	.	Family_of_unknown_function_(DUF5585)(83%)\|Family_of_unknown_function_(DUF5585)(24%)	.	.	ENSG00000171067	ENSG00000171067	.	.	upstream	downstream	intragenic_exonic	.	.	.
RPL18	FP236383.5	-/-	-/+	19:48616130	21:8438178	CDS	exon	translocation/5'-5'	0	0	0	37	29	low	.	.	Ribosomal_protein_60S_L18_and_50S_L18e(65%)\|	.	.	ENSG00000063177	ENSG00000281181	.	.	upstream	upstream	multimappers(1)	.	.	.
FP236383.3	WNT4	+/+	-/+	21:8444649	1:22143139	intron	intron	translocation/5'-5'	0	0	0	59	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000162552	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	FOXO1	+/.	-/.	2:32916565	13:40666276	intron	5'UTR	translocation	0	0	0	480	4	low	.	.	.	.	.	ENSG00000230876	ENSG00000150907	.	.	downstream	downstream	mismatches	.	.	.
FP236383.3	HMGB1P6	+/+	-/-	21:8442589	15:71165122	intron	exon	translocation	0	0	0	10	6	low	.	.	.	.	.	ENSG00000280441	ENSG00000259781	.	.	downstream	downstream	multimappers(1)	.	.	.
NDUFB11	FP671120.4	-/-	+/+	X:47142258	21:8215764	3'UTR	intron	translocation	1	0	0	6	23	low	.	.	ESSS_subunit_of_NADH:ubiquinone_oxidoreductase_(complex_I)_(100%)\|	.	.	ENSG00000147123	ENSG00000278996	.	.	upstream	upstream	min_support	.	.	.
ZFP36L1	ZFP36L1	-/-	-/-	14:68789540	14:68789599	CDS	CDS	duplication/ITD	0	0	0	2	2	low	.	.	Tis11B_like_protein__N_terminus(100%),Zinc_finger_C-x8-C-x5-C-x3-H_type_(and_similar)(100%)\|	.	.	ENSG00000185650	ENSG00000185650	.	.	upstream	downstream	duplicates(1),hairpin(1)	.	.	.
SUPT6H	TRAF4(4476),FAM222B(546)	+/+	./+	17:28690622	17:28755432	intron	intergenic	deletion/read-through	0	0	0	1	0	low	.	.	Acidic_N-terminal_SPT6(100%),HHH_domain(100%),Helix-hairpin-helix_motif_______________________(100%),Helix-turn-helix_DNA-binding_domain_of_SPT6(100%),Holliday-junction_resolvase-like_of_SPT6_(100%)\|	.	.	ENSG00000109111	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	JAK3	+/+	-/-	21:8216050	19:17839630	intron	CDS	translocation	0	1	0	72	7	low	.	.	\|Protein_kinase_domain(100%)	.	.	ENSG00000278996	ENSG00000105639	.	.	downstream	downstream	min_support	.	.	.
MLC1	DHX34	-/-	+/+	22:50064766	19:47353002	intron	5'UTR	translocation	0	0	0	0	17	low	.	.	\|Helicase_associated_domain_(HA2)(100%),Helicase_conserved_C-terminal_domain(100%),Oligonucleotide/oligosaccharide-binding_(OB)-fold(100%)	.	.	ENSG00000100427	ENSG00000134815	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
5_8S_rRNA(1940),FP236383.3(121770)	FP236383.3	./+	+/+	21:8258873	21:8441913	intergenic	intron	deletion/read-through	0	0	0	103	342	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1),mismatches(7),multimappers(9)	.	.	.
CACNB4	ONECUT2(13395),FECH(39684)	-/-	./-	2:152088187	18:57504693	intron	intergenic	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000182389	.	.	.	upstream	downstream	multimappers(1)	.	.	.
HLA-C	CU634019.1	-/-	+/+	6:31271075	21:7053279	CDS/splice-site	intron	translocation	0	0	0	74	0	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%)\|	.	.	ENSG00000204525	ENSG00000277067	.	.	upstream	upstream	mismatches(3)	.	.	.
AC069288.1	MAD1L1	-/-	-/-	7:1957629	7:1957719	3'UTR/splice-site	CDS/splice-site	duplication	0	0	0	1	5	low	.	.	\|Mitotic_checkpoint_protein(32%)	.	.	ENSG00000286192	ENSG00000002822	.	.	upstream	downstream	duplicates(1),hairpin(1)	.	.	.
SULF2	ASCC2	-/+	-/-	20:47683114	22:29838228	CDS	CDS	translocation/3'-3'	0	0	0	0	5	low	.	.	\|CUE_domain(100%)	.	.	ENSG00000196562	ENSG00000100325	.	.	downstream	downstream	mismatches(1)	.	.	.
UQCRH	LINC00486	+/.	+/.	1:46316626	2:32916555	3'UTR	intron	translocation	0	0	0	10	489	low	.	.	.	.	.	ENSG00000173660	ENSG00000230876	.	.	upstream	downstream	low_entropy	.	.	.
FP671120.6	TRAPPC9	-/+	-/-	21:8210800	8:140300536	exon	CDS	translocation/3'-3'	0	0	0	14	4	low	.	.	\|Transport_protein_Trs120_or_TRAPPC9__TRAPP_II_complex_subunit(26%)	.	.	ENSG00000280800	ENSG00000167632	.	.	downstream	downstream	homopolymer(1)	.	.	.
APC	APC	+/+	+/+	5:112828972	5:112821896	CDS/splice-site	CDS/splice-site	duplication/non-canonical_splicing	1	0	0	1	1	low	.	.	Adenomatous_polyposis_coli_(APC)_repeat(100%),Adenomatous_polyposis_coli_tumour_suppressor_protein(100%),Armadillo/beta-catenin-like_repeat(48%),Coiled-coil_N-terminus_of_APC__dimerisation_domain(100%)\|APC_15_residue_motif(100%),APC_basic_domain(100%),APC_repeat(100%),Adenomatous_polyposis_coli_(APC)_repeat(38%),Armadillo-associated_region_on_APC(100%),Armadillo/beta-catenin-like_repeat(100%),EB-1_Binding_Domain(100%),SAMP_Motif(100%),Unstructured_region_on_APC_between_1st_and_2nd_catenin-bdg_motifs(100%),Unstructured_region_on_APC_between_1st_two_creatine-rich_regions(100%),Unstructured_region_on_APC_between_APC_crr_and_SAMP(100%),Unstructured_region_on_APC_between_APC_crr_regions_5_and_6(100%),Unstructured_region_on_APC_between_SAMP_and_APC_crr(100%)	.	.	ENSG00000134982	ENSG00000134982	.	.	downstream	upstream	min_support	.	.	.
LINC00486	DDX23	+/.	-/.	2:32916555	12:48845684	intron	CDS	translocation	0	0	0	489	6	low	.	.	.	.	.	ENSG00000230876	ENSG00000174243	.	.	downstream	downstream	low_entropy	.	.	.
LCE1C(4754),LCE1B(589)	LCE1B	./+	+/+	1:152811382	1:152812426	intergenic	5'UTR	deletion/read-through	0	0	0	1	1	low	.	.	\|Late_cornified_envelope_(100%)	.	.	.	ENSG00000196734	.	.	downstream	upstream	read_through(1)	.	.	.
AC010761.1	RPL23AP42	-/+	-/-	17:28722827	3:161429280	exon	exon	translocation/3'-3'	1	0	0	46	1	low	.	.	.	.	.	ENSG00000264577	ENSG00000234851	.	.	downstream	downstream	min_support	.	.	.
RABL6	USP32	+/+	-/-	9:136839318	17:60268073	CDS	intron	translocation	0	1	0	2	1	low	.	.	Ras_of_Complex__Roc__domain_of_DAPkinase(100%)\|DUSP_domain(100%),EF_hand(56%),Ubiquitin-like_domain(100%),Ubiquitin_carboxyl-terminal_hydrolase(100%)	.	.	ENSG00000196642	ENSG00000170832	.	.	downstream	downstream	min_support	.	.	.
LINC00486	SLC30A5	+/.	+/.	2:32916555	5:69094241	intron	5'UTR	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000145740	.	.	downstream	upstream	low_entropy	.	.	.
CARS2	AL158212.4(22153),AL158212.1(34128)	-/-	./+	13:110642313	10:112854607	intron	intergenic	translocation	1	0	0	5	0	low	.	.	tRNA_synthetases_class_I_(C)_catalytic_domain(100%)\|	.	.	ENSG00000134905	.	.	.	upstream	upstream	min_support	.	.	.
LINC00486	ACADS	+/.	+/.	2:32916555	12:120739582	intron	3'UTR	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000122971	.	.	downstream	upstream	low_entropy	.	.	.
AC126755.4	NPIPA9	+/+	-/+	16:18357132	16:18360802	exon	intron	deletion/read-through/5'-5'	0	0	0	1	2	low	.	.	.	.	.	ENSG00000277647	ENSG00000233024	.	.	downstream	upstream	read_through(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916416	21:8216055	intron	intergenic	translocation/3'-3'	0	0	0	219	54	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	upstream	upstream	mismatches	.	.	.
HLA-C	CCNY(13508),AL121749.1(18308)	-/-	./+	6:31271075	10:35586177	CDS/splice-site	intergenic	translocation	0	0	0	74	0	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%)\|	.	.	ENSG00000204525	.	.	.	upstream	upstream	mismatches(1)	.	.	.
NSD2	HLA-DPA1	+/+	-/-	4:1944739	6:33069885	3'UTR	CDS/splice-site	translocation	0	0	0	0	50	low	.	.	HMG_(high_mobility_group)_box(100%),PWWP_domain(55%)\|Class_II_histocompatibility_antigen__alpha_domain(100%),Immunoglobulin_C1-set_domain(100%)	.	.	ENSG00000109685	ENSG00000231389	.	.	downstream	downstream	mismatches(1)	.	.	.
5_8S_rRNA(2622),FP236383.3(121088)	HMGB1P6	./+	-/-	21:8259555	15:71165122	intergenic	exon	translocation	0	0	0	12	6	low	.	.	.	.	.	.	ENSG00000259781	.	.	downstream	downstream	multimappers(1)	.	.	.
LINC00486	CTDSP1	+/.	+/.	2:32916555	2:218404306	intron	CDS	deletion	0	0	0	489	5	low	.	.	.	.	.	ENSG00000230876	ENSG00000144579	.	.	downstream	upstream	low_entropy	.	.	.
ANKRD17	ANKRD17	-/-	-/-	4:73085249	4:73092300	CDS/splice-site	CDS/splice-site	duplication/non-canonical_splicing	0	1	0	1	2	low	.	.	Ankyrin_repeat(100%),Ankyrin_repeats_(3_copies)(100%),KH_domain(100%)\|KH_domain(23%)	.	.	ENSG00000132466	ENSG00000132466	.	.	upstream	downstream	min_support	.	.	.
BRAF	FP236383.4	-/-	-/+	7:140794373	21:8394204	CDS	exon	translocation/5'-5'	0	0	0	7	19	low	.	.	Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)(100%),Raf-like_Ras-binding_domain(100%)\|	.	.	ENSG00000157764	ENSG00000280614	.	.	upstream	upstream	multimappers(1)	.	.	.
TENT5A	TENT5A	-/-	-/-	6:81752013	6:81752072	CDS	CDS	duplication/ITD	0	0	0	2	2	low	.	.	\|Nucleotidyltransferase_(100%)	.	.	ENSG00000112773	ENSG00000112773	.	.	upstream	downstream	inconsistently_clipped(1)	.	.	.
LINC00486	PI4K2B	+/.	+/.	2:32916406	4:25234137	intron	5'UTR	translocation	0	0	0	50	14	low	.	.	.	.	.	ENSG00000230876	ENSG00000038210	.	.	downstream	upstream	mismatches	.	.	.
GATAD2A	5_8S_rRNA(1408),FP236383.3(122302)	+/+	./+	19:19496062	21:8258341	CDS	intergenic	translocation	0	0	0	3	22	low	.	.	Coiled-coil_and_interaction_region_of_P66A_and_P66B_with_MBD2(100%)\|	.	.	ENSG00000167491	.	.	.	downstream	upstream	multimappers(1)	.	.	.
HLA-C	HLA-B	-/-	-/-	6:31272000	6:31356958	CDS/splice-site	CDS/splice-site	duplication	0	0	0	5	13	low	.	.	\|Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(99%),Immunoglobulin_C1-set_domain(100%),MHC_I_C-terminus(100%)	.	.	ENSG00000204525	ENSG00000234745	.	.	upstream	downstream	duplicates(1)	.	.	.
USP7	MYCN	-/-	+/+	16:8923205	2:15947000	intron	3'UTR	translocation	0	0	0	9	0	low	.	.	MATH_domain(43%)\|	.	.	ENSG00000187555	ENSG00000134323	.	.	upstream	upstream	mismatches(1)	.	.	.
ANKHD1	ANKHD1	+/+	+/+	5:140524178	5:140524120	CDS	CDS	duplication/ITD	0	0	0	2	2	low	.	.	Ankyrin_repeats_(3_copies)(100%)\|KH_domain(100%)	.	.	ENSG00000131503	ENSG00000131503	.	.	downstream	upstream	hairpin(1)	.	.	.
FP236383.3	RNF213	+/+	+/+	21:8401589	17:80375755	intron	intron	translocation	0	0	0	24	9	low	.	.	.	.	.	ENSG00000280441	ENSG00000173821	.	.	downstream	upstream	multimappers(1)	.	.	.
DYNC1H1	RNF44	+/+	-/-	14:102039236	5:176530160	CDS	CDS	translocation	0	0	0	3	3	low	.	.	ATP-binding_dynein_motor_region(100%),Dynein_heavy_chain_AAA_lid_domain(42%),Dynein_heavy_chain__N-terminal_region_1(100%),Dynein_heavy_chain__N-terminal_region_2(100%),Hydrolytic_ATP_binding_site_of_dynein_motor_region(100%),Microtubule-binding_stalk_of_dynein_motor(100%),P-loop_containing_dynein_motor_region(100%),P-loop_containing_dynein_motor_region_D4(100%)\|Ring_finger_domain(100%)	.	.	ENSG00000197102	ENSG00000146083	.	.	downstream	downstream	mismatches(1)	.	.	.
TXNL4A	TXNL4A	-/-	-/-	18:79973525	18:79973846	3'UTR	CDS	duplication	1	0	0	2	1	low	.	.	Mitosis_protein_DIM1(100%)\|Mitosis_protein_DIM1(34%)	.	.	ENSG00000141759	ENSG00000141759	.	.	upstream	downstream	intragenic_exonic	.	.	.
FP671120.4	BCOR	+/+	-/-	21:8214772	X:40145611	intron	intron	translocation	0	0	0	135	0	low	.	.	\|Ankyrin_repeats_(3_copies)(100%),BCL-6_co-repressor__non-ankyrin-repeat_region(100%),BCORL-PCGF1-binding_domain(100%)	.	.	ENSG00000278996	ENSG00000183337	.	.	downstream	downstream	mismatches(1)	.	.	.
HLA-C	COMMD7	-/-	-/+	6:31271075	20:32706859	CDS/splice-site	intron	translocation/5'-5'	0	0	0	74	0	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%)\|	.	.	ENSG00000204525	ENSG00000149600	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.7	CENPF	-/+	+/+	21:8254744	1:214630618	exon	CDS	translocation/3'-3'	0	0	0	28	6	low	.	.	\|Leucine-rich_repeats_of_kinetochore_protein_Cenp-F/LEK1(100%),Rb-binding_domain_of_kinetochore_protein_Cenp-F/LEK1(100%)	.	.	ENSG00000281383	ENSG00000117724	.	.	downstream	upstream	multimappers(1)	.	.	.
ANKRD44-IT1	FP236383.3	-/+	+/+	2:197282855	21:8445983	intron	intron	translocation/3'-3'	0	0	0	0	42	low	.	.	.	.	.	ENSG00000236977	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
RUNX3	RUNX1	-/-	-/-	1:24929587	21:34880712	CDS/splice-site	CDS/splice-site	translocation	0	0	0	7	1	low	.	.	Runt_domain(30%)\|Runt_domain(69%),Runx_inhibition_domain(100%)	.	.	ENSG00000020633	ENSG00000159216	.	.	upstream	downstream	mismatches(1)	.	.	.
HLA-C	HLA-B	-/-	-/-	6:31271073	6:31355592	CDS/splice-site	CDS/splice-site	duplication	3	0	0	74	18	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%)\|Immunoglobulin_C1-set_domain(100%),MHC_I_C-terminus(100%)	.	.	ENSG00000204525	ENSG00000234745	.	.	upstream	downstream	blacklist	.	.	.
DCAF1(11512),RAD54L2(29630)	RIC1	./+	+/+	3:51511514	9:5656587	intergenic	CDS	translocation	0	0	0	0	4	low	.	.	\|RIC1(100%)	.	.	.	ENSG00000107036	.	.	downstream	upstream	mismatches(1)	.	.	.
SRRM1	PRNCR1	+/+	+/-	1:24671561	8:127086474	CDS	exon	translocation/5'-5'	1	0	0	5	1	low	.	.	PWI_domain(100%)\|	.	.	ENSG00000133226	ENSG00000282961	.	.	downstream	downstream	min_support	.	.	.
AC138932.3	NPIPA2	-/-	+/-	16:14953015	16:14762789	exon	intron	deletion/read-through/5'-5'	0	0	0	3	2	low	.	.	.	.	.	ENSG00000273804	ENSG00000254852	.	.	upstream	downstream	multimappers(1)	.	.	.
AC122707.1(184337),RNF180(463)	RNF180	./+	+/+	5:64165380	5:64200808	intergenic	CDS/splice-site	deletion/read-through	0	0	0	1	1	low	.	.	\|Zinc_finger__C3HC4_type_(RING_finger)(100%)	.	.	.	ENSG00000164197	.	.	downstream	upstream	read_through(1)	.	.	.
LYPLAL1	LYPLAL1(5653),AL360093.1(3730)	+/+	./+	1:219211752	1:219218518	3'UTR	intergenic	deletion/read-through	0	0	0	0	1	low	.	.	Phospholipase/Carboxylesterase(100%)\|	.	.	ENSG00000143353	.	.	.	downstream	upstream	read_through(1)	.	.	.
FP236383.3	CPT1A	+/+	-/-	21:8399005	11:68815389	intron	CDS	translocation	0	0	1	17	4	low	.	.	\|Carnitine_O-palmitoyltransferase_N-terminus(39%),Choline/Carnitine_o-acyltransferase(100%)	.	.	ENSG00000280441	ENSG00000110090	.	.	downstream	downstream	min_support	.	.	.
LINC00486	KIF18A	+/.	-/.	2:32916553	11:28069082	intron	intron	translocation	0	0	0	489	13	low	.	.	.	.	.	ENSG00000230876	ENSG00000121621	.	.	downstream	downstream	mismatches	.	.	.
EIF5B	EIF5B	+/+	+/+	2:99361726	2:99361669	CDS	CDS	duplication/ITD	0	0	0	3	4	low	.	.	\|Elongation_factor_Tu_GTP_binding_domain(100%),Elongation_factor_Tu_domain_2(100%),Translation-initiation_factor_2(100%)	.	.	ENSG00000158417	ENSG00000158417	.	.	downstream	upstream	hairpin(1)	.	.	.
RFC2	RFC2	-/-	-/-	7:74239938	7:74246763	CDS/splice-site	CDS/splice-site	duplication/non-canonical_splicing	1	0	0	2	1	low	.	.	ATPase_family_associated_with_various_cellular_activities_(AAA)(100%),DNA_polymerase_III__delta_subunit(100%),Magnesium_chelatase__subunit_ChlI(100%)\|ATPase_family_associated_with_various_cellular_activities_(AAA)(78%),DNA_polymerase_III__delta_subunit(100%),Magnesium_chelatase__subunit_ChlI(8%),Replication_factor_C_C-terminal_domain(100%)	.	.	ENSG00000049541	ENSG00000049541	.	.	upstream	downstream	min_support	.	.	.
FP671120.4	MOV10	+/-	+/+	21:8216785	1:112695444	intron	CDS	translocation/3'-3'	0	0	0	34	5	low	.	.	\|AAA_domain(87%)	.	.	ENSG00000278996	ENSG00000155363	.	.	upstream	upstream	mismatches(1)	.	.	.
EGLN1	LINC00486	-/.	+/.	1:231421707	2:32916555	CDS	intron	translocation	0	0	0	4	489	low	.	.	.	.	.	ENSG00000135766	ENSG00000230876	.	.	downstream	downstream	low_entropy	.	.	.
FCHSD2	FP671120.4	-/-	+/+	11:72887472	21:8218168	CDS/splice-site	intron	translocation	0	0	0	6	5	low	.	.	Fes/CIP4__and_EFC/F-BAR_homology_domain(100%)\|	.	.	ENSG00000137478	ENSG00000278996	.	.	upstream	upstream	multimappers(1)	.	.	.
LINC00486	RPLP0	+/.	-/.	2:32916555	12:120198605	intron	CDS	translocation	0	0	0	489	27	low	.	.	.	.	.	ENSG00000230876	ENSG00000089157	.	.	downstream	downstream	low_entropy	.	.	.
FP236383.3	FP236383.3	+/+	+/+	21:8400415	21:8400395	intron	intron	duplication/ITD	0	0	0	105	87	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	downstream	upstream	low_entropy(1),merge_adjacent	.	.	.
THRAP3	FP671120.7	+/+	-/+	1:36301589	21:8254811	CDS	exon	translocation/5'-5'	0	0	0	4	26	low	.	.	THRAP3/BCLAF1_family(100%)\|	.	.	ENSG00000054118	ENSG00000281383	.	.	downstream	upstream	multimappers(1)	.	.	.
FP236383.3	NBEAL2	+/+	+/+	21:8393142	3:47002080	intron	CDS	translocation	0	0	0	19	6	low	.	.	\|Beige/BEACH_domain(100%),Domain_of_unknown_function_(DUF4800)(77%),PH_domain_associated_with_Beige/BEACH(100%),WD_domain__G-beta_repeat(100%)	.	.	ENSG00000280441	ENSG00000160796	.	.	downstream	upstream	multimappers(1)	.	.	.
SH3GL3	HLA-DPA1	+/-	-/-	15:83556871	6:33069885	intron	CDS/splice-site	translocation/3'-3'	0	0	0	0	50	low	.	.	\|Class_II_histocompatibility_antigen__alpha_domain(100%),Immunoglobulin_C1-set_domain(100%)	.	.	ENSG00000140600	ENSG00000231389	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	VWA8	+/.	-/.	2:32916414	13:41778053	intron	CDS	translocation	0	0	0	50	14	low	.	.	.	.	.	ENSG00000230876	ENSG00000102763	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916555	21:8442912	intron	intron	translocation	0	0	0	489	17	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	downstream	upstream	low_entropy	.	.	.
HLA-A	MIR548M(114530),AL022161.1(275613)	+/+	./-	6:29943541	X:95177756	CDS/splice-site	intergenic	translocation	0	0	0	8	0	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%)\|	.	.	ENSG00000206503	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC011603.2	FP236383.3	+/-	+/+	12:49128112	21:8441531	exon	intron	translocation/3'-3'	0	0	0	21	19	low	.	.	.	.	.	ENSG00000258017	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
LINC00486	METTL16	+/.	-/.	2:32916553	17:2420233	intron	CDS	translocation	0	0	0	489	5	low	.	.	.	.	.	ENSG00000230876	ENSG00000127804	.	.	downstream	downstream	low_entropy	.	.	.
FP236383.3	TPR	+/+	-/-	21:8445414	1:186357532	intron	CDS	translocation	1	0	0	7	1	low	.	.	\|TPR/MLP1/MLP2-like_protein(100%)	.	.	ENSG00000280441	ENSG00000047410	.	.	downstream	downstream	min_support	.	.	.
NPIPB4	LINC00486	-/-	+/-	16:21839004	2:32916555	CDS	intron	translocation/5'-5'	0	0	0	4	489	low	.	.	Nuclear_pore_complex_interacting_protein_(NPIP)(68%)\|	.	.	ENSG00000185864	ENSG00000230876	.	.	upstream	downstream	low_entropy	.	.	.
FP671120.3(3249),FP671120.7(1194)	FP236383.3	./-	+/+	21:8253398	21:8397807	intergenic	intron	inversion	0	0	0	6	119	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
NUP188	TGM1	+/+	-/-	9:129005772	14:24264408	CDS	5'UTR	translocation	0	0	0	4	0	low	.	.	Nucleoporin_subcomplex_protein_binding_to_Pom34(100%)\|Transglutaminase-like_superfamily(100%),Transglutaminase_family(100%),Transglutaminase_family__C-terminal_ig_like_domain(100%)	.	.	ENSG00000095319	ENSG00000092295	.	.	downstream	downstream	mismatches(1)	.	.	.
FP671120.4	5_8S_rRNA(3330),FP236383.3(120380)	+/+	./+	21:8216036	21:8260263	intron	intergenic	deletion/read-through	0	2	0	46	57	low	.	.	.	.	.	ENSG00000278996	.	.	.	downstream	upstream	duplicates(2),mismatches(1),multimappers(1),non_coding_neighbors	.	.	.
5_8S_rRNA(2024),FP236383.3(121686)	FP236383.3	./+	+/+	21:8258957	21:8441996	intergenic	intron	deletion/read-through	0	0	0	386	563	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1)	.	.	.
FP236383.3	RNF213	+/+	+/+	21:8445821	17:80375755	intron	intron	translocation	0	0	0	23	9	low	.	.	.	.	.	ENSG00000280441	ENSG00000173821	.	.	downstream	upstream	multimappers(1)	.	.	.
NSD1	NSD1	+/+	+/+	5:177248314	5:177248187	CDS	CDS	duplication	0	1	0	1	3	low	.	.	PWWP_domain(50%)\|AWS_domain(100%),NSD_Cys-His_rich_domain(100%),PWWP_domain(49%),SET_domain(100%)	.	.	ENSG00000165671	ENSG00000165671	.	.	downstream	upstream	intragenic_exonic	.	.	.
FP236383.5	MACIR	-/+	+/+	21:8438108	5:103275938	exon	CDS	translocation/3'-3'	0	0	0	7	4	low	.	.	\|UNC119-binding_protein_C5orf30_homologue(97%)	.	.	ENSG00000281181	ENSG00000181751	.	.	downstream	upstream	mismatches(1)	.	.	.
REPIN1	REPIN1	+/+	+/+	7:150372313	7:150372326	CDS	CDS	deletion/read-through	0	0	0	2	3	low	.	.	Zinc_finger__C2H2_type(40%)\|Zinc_finger__C2H2_type(60%)	.	.	ENSG00000214022	ENSG00000214022	.	.	downstream	upstream	read_through(2)	.	.	.
NCAPD3	FP671120.3(3951),FP671120.7(492)	-/-	./+	11:134204927	21:8254100	CDS	intergenic	translocation	1	0	0	1	14	low	.	.	.	.	.	ENSG00000151503	.	.	.	upstream	upstream	min_support	.	.	.
AC012485.2	CCT7	-/-	+/+	2:238300125	2:73244034	exon	CDS	inversion	0	0	0	0	0	low	.	.	\|TCP-1/cpn60_chaperonin_family(76%)	.	.	ENSG00000232306	ENSG00000135624	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/+	+/+	21:8217210	21:8444477	intron	intron	deletion/read-through	0	0	0	17	19	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	duplicates(1)	.	.	.
ACIN1	ACIN1	-/-	-/-	14:23079575	14:23079580	CDS	CDS	duplication/ITD	0	0	0	3	1	low	.	.	SAP_domain(100%)\|RNSP1-SAP18_binding_(RSB)_motif(100%)	.	.	ENSG00000100813	ENSG00000100813	.	.	upstream	downstream	hairpin(2)	.	.	.
OGFR	OGFR	+/+	+/+	20:62813570	20:62813511	CDS	CDS	duplication/ITD	0	0	0	3	4	low	.	.	Opioid_growth_factor_receptor_(OGFr)_conserved_region(100%),Opioid_growth_factor_receptor_repeat(97%)\|Opioid_growth_factor_receptor_repeat(16%)	.	.	ENSG00000060491	ENSG00000060491	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
LINC00486	TRIM21	+/.	-/.	2:32916556	11:4389659	intron	CDS	translocation	0	0	0	489	0	low	.	.	.	.	.	ENSG00000230876	ENSG00000132109	.	.	downstream	downstream	low_entropy	.	.	.
LINC00486	NCKAP1L	+/.	+/.	2:32916555	12:54528297	intron	CDS	translocation	0	0	0	489	7	low	.	.	.	.	.	ENSG00000230876	ENSG00000123338	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	DONSON	+/.	-/.	2:32916556	21:33588430	intron	CDS	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000159147	.	.	downstream	downstream	low_entropy	.	.	.
CCDC88C	FP236383.3	-/-	+/+	14:91294203	21:8434653	CDS	intron	translocation	0	0	0	6	2	low	.	.	HOOK_domain(100%)\|	.	.	ENSG00000015133	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
XPC	FP236383.3	-/-	+/-	3:14158337	21:8399175	CDS	intron	translocation/5'-5'	0	0	0	5	80	low	.	.	Rad4_transglutaminase-like_domain(12%)\|	.	.	ENSG00000154767	ENSG00000280441	.	.	upstream	downstream	multimappers(1)	.	.	.
ANKRD30BL	H2AC19	-/-	+/+	2:132254381	1:149851143	intron	CDS	translocation	0	0	0	0	72	low	.	.	\|C-terminus_of_histone_H2A(100%),Core_histone_H2A/H2B/H3/H4(93%)	.	.	ENSG00000163046	ENSG00000272196	.	.	upstream	upstream	mismatches(1)	.	.	.
EIF2AK2	EIF2AK2	-/-	-/-	2:37120008	2:37120110	CDS	CDS	duplication	0	0	0	5	7	low	.	.	Double-stranded_RNA_binding_motif(100%),Protein_kinase_domain(50%)\|Protein_kinase_domain(61%)	.	.	ENSG00000055332	ENSG00000055332	.	.	upstream	downstream	hairpin(1)	.	.	.
TTF2	AL591888.1(100928),CDK4P1(300701)	+/+	./-	1:117101562	1:105133293	3'UTR/splice-site	intergenic	inversion	0	0	0	33	0	low	.	.	GRF_zinc_finger(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%)\|	.	.	ENSG00000116830	.	.	.	downstream	downstream	mismatches(1)	.	.	.
EIF3CL	EIF3CL	-/-	-/-	16:28392114	16:28399906	CDS	CDS	duplication	0	0	0	8	7	low	.	.	Eukaryotic_translation_initiation_factor_3_subunit_8_N-terminus(35%)\|Eukaryotic_translation_initiation_factor_3_subunit_8_N-terminus(67%),PCI_domain(100%)	.	.	ENSG00000205609	ENSG00000205609	.	.	upstream	downstream	hairpin(1)	.	.	.
BIRC6	LINC00486	+/.	+/.	2:32478614	2:32916556	intron	intron	duplication	0	0	0	3	489	low	.	.	.	.	.	ENSG00000115760	ENSG00000230876	.	.	upstream	downstream	low_entropy	.	.	.
EFHC2	TUBGCP5	-/+	-/-	X:44282647	15:23005778	intron	intron	translocation/3'-3'	0	0	0	0	3	low	.	.	\|Gamma_tubulin_complex_component_C-terminal(57%)	.	.	ENSG00000183690	ENSG00000275835	.	.	downstream	downstream	mismatches(1)	.	.	.
NPIPB12	LINC00486	-/-	+/-	16:29487093	2:32916555	CDS	intron	translocation/5'-5'	0	0	0	4	489	low	.	.	Nuclear_pore_complex_interacting_protein_(NPIP)(66%)\|	.	.	ENSG00000169203	ENSG00000230876	.	.	upstream	downstream	low_entropy	.	.	.
AC069503.2	FP671120.4	+/+	+/+	12:121916322	21:8211973	exon	intron	translocation	1	0	0	5	2	low	.	.	.	.	.	ENSG00000256950	ENSG00000278996	.	.	downstream	upstream	min_support	.	.	.
ADAR	FP671120.4	-/-	+/+	1:154601825	21:8216624	CDS	intron	translocation	0	1	0	5	20	low	.	.	Adenosine_deaminase_z-alpha_domain(50%)\|	.	.	ENSG00000160710	ENSG00000278996	.	.	upstream	upstream	min_support	.	.	.
LAPTM5	LAPTM5	-/-	-/-	1:30733900	1:30738984	CDS	CDS	duplication	1	0	0	26	45	low	.	.	Golgi_4-transmembrane_spanning_transporter(90%)\|Golgi_4-transmembrane_spanning_transporter(45%)	.	.	ENSG00000162511	ENSG00000162511	.	.	upstream	downstream	intragenic_exonic	.	.	.
NSD2	NSD2	+/+	+/+	4:1904378	4:1900626	CDS/splice-site	5'UTR/splice-site	duplication/non-canonical_splicing	1	0	0	2	0	low	.	.	PWWP_domain(16%)\|AWS_domain(100%),HMG_(high_mobility_group)_box(100%),NSD_Cys-His_rich_domain(100%),PHD-finger(100%),PWWP_domain(100%),SET_domain(100%)	.	.	ENSG00000109685	ENSG00000109685	.	.	downstream	upstream	min_support	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916555	21:8441953	intron	intron	translocation	0	0	0	489	418	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	downstream	upstream	low_entropy	.	.	.
TTF2	AL136100.1(146985),C6orf118(15155)	+/+	./+	1:117101562	6:165264509	3'UTR/splice-site	intergenic	translocation	0	0	0	33	0	low	.	.	GRF_zinc_finger(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%)\|	.	.	ENSG00000116830	.	.	.	downstream	upstream	mismatches(1)	.	.	.
SRRM1	AC020688.1	+/+	-/-	1:24671561	8:127086474	CDS	exon	translocation	1	0	0	5	1	low	.	.	PWI_domain(100%)\|	.	.	ENSG00000133226	ENSG00000224722	.	.	downstream	downstream	min_support	.	.	.
DDX5	5_8S_rRNA(3682),FP236383.3(120028)	-/-	./+	17:64501927	21:8260615	3'UTR	intergenic	translocation	0	0	0	6	17	low	.	.	DEAD/DEAH_box_helicase(100%),Helicase_conserved_C-terminal_domain(72%)\|	.	.	ENSG00000108654	.	.	.	upstream	upstream	multimappers(1)	.	.	.
FP236383.4	PRRC2C	-/+	+/+	21:8393876	1:171577521	exon	CDS	translocation/3'-3'	0	0	0	13	4	low	.	.	.	.	.	ENSG00000280614	ENSG00000117523	.	.	downstream	upstream	multimappers(1)	.	.	.
ANKRD44	FP236383.3	-/+	+/+	2:197282855	21:8401752	intron	intron	translocation/3'-3'	0	0	0	0	31	low	.	.	.	.	.	ENSG00000065413	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	LCOR	+/+	+/+	21:8441493	10:96982090	intron	CDS	translocation	0	0	0	32	4	low	.	.	\|Domain_of_unknown_function_(DUF4553)(100%)	.	.	ENSG00000280441	ENSG00000196233	.	.	downstream	upstream	multimappers(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916556	21:8442040	intron	intron	translocation	0	0	0	489	527	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	downstream	upstream	duplicates	.	.	.
RABGGTB	LINC00486	+/.	+/.	1:75792280	2:32916554	CDS	intron	translocation	0	0	0	8	489	low	.	.	.	.	.	ENSG00000137955	ENSG00000230876	.	.	upstream	downstream	low_entropy	.	.	.
DDX27	DDX27	+/+	+/+	20:49238996	20:49236442	CDS	CDS	duplication	0	0	0	1	1	low	.	.	DEAD/DEAH_box_helicase(100%),Helicase_conserved_C-terminal_domain(100%)\|	.	.	ENSG00000124228	ENSG00000124228	.	.	downstream	upstream	hairpin(1)	.	.	.
AC008012.1	AC008012.1	+/+	+/+	12:4276107	12:4274221	CDS	CDS	duplication	0	1	0	14	0	low	.	.	.	.	.	ENSG00000285901	ENSG00000285901	.	.	downstream	upstream	intragenic_exonic	.	.	.
RCSD1	RCSD1	+/+	+/+	1:167697379	1:167697346	CDS	CDS	duplication/ITD	0	0	0	5	3	low	.	.	RCSD_region(23%),WASH_complex_subunit_CAP-Z_interacting__central_region(100%)\|RCSD_region(87%)	.	.	ENSG00000198771	ENSG00000198771	.	.	downstream	upstream	duplicates(1),hairpin(1)	.	.	.
AC106886.5	SRCAP	+/+	+/+	16:30709882	16:30709898	CDS	CDS/splice-site	deletion/read-through	0	0	0	3	1	low	.	.	\|Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%)	.	.	ENSG00000282034	ENSG00000080603	.	.	downstream	upstream	read_through(1)	.	.	.
EP300	EP300	+/+	+/+	22:41178498	22:41178169	CDS	CDS	duplication	0	1	0	0	2	low	.	.	Bromodomain(100%),CREB-binding_protein/p300__atypical_RING_domain(100%),Creb_binding(100%),Histone_acetylation_protein(100%),KIX_domain(100%),TAZ_zinc_finger(100%),Zinc_finger__ZZ_type(100%)\|	.	.	ENSG00000100393	ENSG00000100393	.	.	downstream	upstream	intragenic_exonic	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916556	21:8446049	intron	intron	translocation	0	0	0	489	39	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	downstream	upstream	low_entropy	.	.	.
FP671120.4	HNRNPA0	+/-	-/-	21:8217067	5:137753937	intron	CDS	translocation/3'-3'	0	1	0	22	3	low	.	.	\|RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(70%)	.	.	ENSG00000278996	ENSG00000177733	.	.	upstream	downstream	min_support	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916555	21:8446049	intron	intron	translocation	0	0	0	489	39	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	ACADS	+/.	+/.	2:32916556	12:120739582	intron	3'UTR	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000122971	.	.	downstream	upstream	low_entropy	.	.	.
C19orf73	FP671120.4	-/-	+/+	19:49119098	21:8215729	5'UTR	intron	translocation	0	0	0	0	21	low	.	.	.	.	.	ENSG00000221916	ENSG00000278996	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
USP7	AC009432.2	-/-	-/-	16:8923203	15:94546725	intron	intron	translocation	0	0	0	9	0	low	.	.	MATH_domain(43%)\|	.	.	ENSG00000187555	ENSG00000287950	.	.	upstream	downstream	mismatches(1)	.	.	.
SEPTIN6	SEPTIN6	-/-	-/-	X:119629337	X:119629480	CDS	CDS	duplication	0	0	0	2	4	low	.	.	Septin(100%)\|	.	.	ENSG00000125354	ENSG00000125354	.	.	upstream	downstream	hairpin(1)	.	.	.
AC012531.3	FP671120.4	+/+	+/+	12:54014674	21:8216036	intron	intron	translocation	0	0	0	0	47	low	.	.	.	.	.	ENSG00000273049	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
PPAN	FP671120.7	+/+	-/+	19:10108036	21:8255098	CDS	exon	translocation/5'-5'	0	1	0	2	20	low	.	.	Brix_domain(39%)\|	.	.	ENSG00000130810	ENSG00000281383	.	.	downstream	upstream	min_support	.	.	.
LINC00486	TUBB	+/.	+/.	2:32916556	6:30722594	intron	CDS	translocation	0	0	0	489	19	low	.	.	.	.	.	ENSG00000230876	ENSG00000196230	.	.	downstream	upstream	low_entropy	.	.	.
RBM27	RBM27	+/+	+/+	5:146230676	5:146229717	CDS	CDS/splice-site	duplication	1	0	0	1	1	low	.	.	PWI_domain(100%)\|RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%),Zinc_finger_C-x8-C-x5-C-x3-H_type_(and_similar)(100%)	.	.	ENSG00000091009	ENSG00000091009	.	.	downstream	upstream	intragenic_exonic	.	.	.
GLI3	PARK7	-/+	+/+	7:42230117	1:7965336	intron	CDS	translocation/3'-3'	0	0	0	0	19	low	.	.	\|DJ-1/PfpI_family(82%)	.	.	ENSG00000106571	ENSG00000116288	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/+	+/+	21:8214734	21:8258961	intron	intergenic	deletion/read-through	0	0	0	81	521	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	duplicates(1)	.	.	.
FP671120.4	FP671120.4	+/+	+/+	21:8217379	21:8217372	intron	intron	duplication/ITD	0	0	0	83	59	low	.	.	.	.	.	ENSG00000278996	ENSG00000278996	.	.	downstream	upstream	inconsistently_clipped(1),low_entropy(1),merge_adjacent	.	.	.
FP236383.3	H2AC18	+/+	-/-	21:8438711	1:149842668	intron	CDS	translocation	0	0	0	8	70	low	.	.	\|C-terminus_of_histone_H2A(100%),Core_histone_H2A/H2B/H3/H4(92%)	.	.	ENSG00000280441	ENSG00000203812	.	.	downstream	downstream	multimappers(1)	.	.	.
FP671120.4	PARP12	+/-	-/-	21:8215982	7:140046916	intron	CDS	translocation/3'-3'	0	0	0	46	14	low	.	.	\|Poly(ADP-ribose)_polymerase_catalytic_domain(100%),WWE_domain(100%)	.	.	ENSG00000278996	ENSG00000059378	.	.	upstream	downstream	mismatches(1)	.	.	.
TRAPPC10	FP236383.3	+/+	+/-	21:44103472	21:8443011	CDS	intron	inversion/3'-3'	1	0	0	1	22	low	.	.	Trafficking_protein_particle_complex_subunit_10__TRAPPC10(97%)\|	.	.	ENSG00000160218	ENSG00000280441	.	.	downstream	downstream	min_support	.	.	.
YWHAE	YWHAE	-/-	-/-	17:1361092	17:1362008	CDS/splice-site	CDS/splice-site	duplication/non-canonical_splicing	1	0	0	11	4	low	.	.	14-3-3_protein(78%)\|14-3-3_protein(66%)	.	.	ENSG00000108953	ENSG00000108953	.	.	upstream	downstream	min_support	.	.	.
FP236383.5	NCOR2	-/+	-/-	21:8438293	12:124342033	exon	CDS	translocation/3'-3'	0	0	0	37	1	low	.	.	.	.	.	ENSG00000281181	ENSG00000196498	.	.	downstream	downstream	multimappers(1)	.	.	.
RBM34	RBM34	-/-	-/-	1:235160594	1:235160919	CDS	CDS	duplication	0	0	0	3	3	low	.	.	\|RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)	.	.	ENSG00000188739	ENSG00000188739	.	.	upstream	downstream	hairpin(1)	.	.	.
BRD9	FP236383.3	-/-	+/+	5:891758	21:8394681	CDS	intron	translocation	0	0	0	9	3	low	.	.	.	.	.	ENSG00000028310	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
SCMH1	SCMH1	-/-	-/-	1:41070595	1:41075451	CDS/splice-site	CDS/splice-site	duplication/non-canonical_splicing	1	0	0	3	1	low	.	.	RNA_binding_Region(100%),SLED_domain(1%),mbt_repeat(100%)\|RNA_binding_Region(100%),SAM_domain_(Sterile_alpha_motif)(100%),SLED_domain(100%)	.	.	ENSG00000010803	ENSG00000010803	.	.	upstream	downstream	min_support	.	.	.
FP671120.4	RPL4	+/+	-/-	21:8210050	15:66503368	intron	CDS	translocation	0	1	0	13	35	low	.	.	\|60S_ribosomal_protein_L4_C-terminal_domain(100%),Ribosomal_protein_L4/L1_family(86%)	.	.	ENSG00000278996	ENSG00000174444	.	.	downstream	downstream	min_support	.	.	.
LINC00486	DISC1	+/+	+/+	2:32916350	1:231694596	intron	CDS	translocation	0	0	0	332	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000162946	.	.	downstream	upstream	mismatches(1)	.	.	.
5_8S_rRNA(3278),FP236383.3(120432)	PARP12	./-	-/-	21:8260211	7:140046916	intergenic	CDS	translocation	0	0	0	27	14	low	.	.	\|Poly(ADP-ribose)_polymerase_catalytic_domain(100%),WWE_domain(100%)	.	.	.	ENSG00000059378	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916554	21:8441985	intron	intron	translocation	0	0	0	489	563	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916558	21:8445945	intron	intron	translocation	0	0	0	489	37	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	downstream	upstream	mismatches	.	.	.
HNRNPH3	HNRNPH3	+/+	+/+	10:68341651	10:68339441	CDS	CDS/splice-site	duplication	0	1	0	1	4	low	.	.	RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)\|RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(48%)	.	.	ENSG00000096746	ENSG00000096746	.	.	downstream	upstream	intragenic_exonic	.	.	.
LINC00486	AC006486.1	+/+	-/-	2:32916491	19:42242194	intron	intron	translocation	0	0	0	215	0	low	.	.	.	.	.	ENSG00000230876	ENSG00000268643	.	.	downstream	downstream	mismatches(1)	.	.	.
FP671120.3(2904),FP671120.7(1539)	FP236383.3	./+	+/+	21:8253053	21:8400399	intergenic	intron	deletion/read-through	0	0	0	2	87	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
GOLGB1	GOLGB1	-/-	-/-	3:121691216	3:121691270	CDS	CDS	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000173230	ENSG00000173230	.	.	upstream	downstream	duplicates(1),hairpin(1)	.	.	.
MAD1L1	ASCC2	-/+	-/-	7:2081705	22:29838228	intron	CDS	translocation/3'-3'	0	0	0	0	5	low	.	.	\|CUE_domain(100%)	.	.	ENSG00000002822	ENSG00000100325	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	PI4K2B	+/.	+/.	2:32916409	4:25234137	intron	5'UTR	translocation	0	0	0	50	14	low	.	.	.	.	.	ENSG00000230876	ENSG00000038210	.	.	downstream	upstream	mismatches	.	.	.
TOPBP1	TOPBP1	-/-	-/-	3:133628586	3:133637945	CDS	CDS	duplication	1	0	0	3	2	low	.	.	BRCA1_C_Terminus_(BRCT)_domain(49%),twin_BRCT_domain(100%)\|BRCA1_C_Terminus_(BRCT)_domain(50%)	.	.	ENSG00000163781	ENSG00000163781	.	.	upstream	downstream	intragenic_exonic	.	.	.
HLA-H	HLA-A	+/+	+/+	6:29888742	6:29944122	exon/splice-site	CDS/splice-site	deletion/read-through	0	1	0	2	11	low	.	.	\|Immunoglobulin_C1-set_domain(100%),MHC_I_C-terminus(100%)	.	.	ENSG00000206341	ENSG00000206503	.	.	downstream	upstream	min_support	.	.	.
EGLN1	LINC00486	-/.	+/.	1:231421707	2:32916553	CDS	intron	translocation	0	0	0	4	489	low	.	.	.	.	.	ENSG00000135766	ENSG00000230876	.	.	downstream	downstream	low_entropy	.	.	.
NSFP1	NSF	+/+	+/+	17:46476899	17:46694628	exon	CDS	deletion/read-through	0	0	1	3	4	low	.	.	\|AAA+_lid_domain(37%),ATPase_family_associated_with_various_cellular_activities_(AAA)(47%)	.	.	ENSG00000260075	ENSG00000073969	.	.	downstream	upstream	min_support	.	.	.
AC069288.1	FP671120.7	-/-	-/+	7:1957674	21:8254913	3'UTR	exon	translocation/5'-5'	0	0	0	5	20	low	.	.	.	.	.	ENSG00000286192	ENSG00000281383	.	.	upstream	upstream	multimappers(1)	.	.	.
PRTFDC1	PRTFDC1	-/-	-/-	10:24952528	10:24942436	CDS/splice-site	CDS/splice-site	deletion/read-through	0	0	0	1	1	low	.	.	\|Phosphoribosyl_transferase_domain(100%)	.	.	ENSG00000099256	ENSG00000099256	.	.	upstream	downstream	read_through(1)	.	.	.
FP671120.4	FP671120.4	+/+	+/+	21:8214757	21:8214749	intron	intron	duplication/ITD	0	0	0	105	169	low	.	.	.	.	.	ENSG00000278996	ENSG00000278996	.	.	downstream	upstream	low_entropy(2)	.	.	.
LINC00486	HERC5	+/.	+/.	2:32916556	4:88457400	intron	CDS	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000138646	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	5_8S_rRNA(1997),FP236383.3(121713)	+/.	./.	2:32916555	21:8258930	intron	intergenic	translocation	0	0	0	489	466	low	.	.	.	.	.	ENSG00000230876	.	.	.	downstream	upstream	low_entropy	.	.	.
CCND2	CCND2	+/+	+/+	12:4276107	12:4274221	CDS	CDS	duplication	0	1	0	14	0	low	.	.	Cyclin__N-terminal_domain(58%)\|Cyclin__C-terminal_domain(100%),Cyclin__N-terminal_domain(72%)	.	.	ENSG00000118971	ENSG00000118971	.	.	downstream	upstream	intragenic_exonic	.	.	.
FP671120.4	5_8S_rRNA(1945),FP236383.3(121765)	+/+	./+	21:8214650	21:8258878	intron	intergenic	deletion/read-through	1	8	0	84	281	low	.	.	.	.	.	ENSG00000278996	.	.	.	downstream	upstream	duplicates(1),mismatches(7),non_coding_neighbors	.	.	.
HLA-B	5_8S_rRNA	-/-	+/+	6:31271232	21:8256859	intergenic	exon	translocation	0	0	0	36	4	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%),Immunoglobulin_C1-set_domain(100%),MHC_I_C-terminus(100%)\|	.	.	ENSG00000234745	ENSG00000277739	.	.	upstream	upstream	mismatches	.	.	.
CBX3	CBX3	+/+	+/+	7:26208555	7:26206368	CDS/splice-site	CDS/splice-site	duplication/non-canonical_splicing	1	0	0	6	2	low	.	.	Chromo_(CHRromatin_Organisation_MOdifier)_domain(100%)\|Chromo_(CHRromatin_Organisation_MOdifier)_domain(100%),Chromo_shadow_domain(100%)	.	.	ENSG00000122565	ENSG00000122565	.	.	downstream	upstream	min_support	.	.	.
OR7E104P(172),LINC00355(6900)	FP671120.4	./-	+/+	13:63844297	21:8217366	intergenic	intron	translocation	0	0	0	0	59	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	mismatches(2)	.	.	.
FP236383.3	PRDM12	+/+	+/-	21:8444649	9:130681631	intron	CDS	translocation/5'-5'	0	0	0	59	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000130711	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	KIF18A	+/.	-/.	2:32916549	11:28069082	intron	intron	translocation	0	0	0	489	13	low	.	.	.	.	.	ENSG00000230876	ENSG00000121621	.	.	downstream	downstream	mismatches	.	.	.
TUBA1B	DPP10	-/-	+/-	12:49128112	2:114937574	CDS	intron	translocation/5'-5'	1	0	0	21	0	low	.	.	Tubulin/FtsZ_family__GTPase_domain(100%),Tubulin_C-terminal_domain(100%)\|	.	.	ENSG00000123416	ENSG00000175497	.	.	upstream	downstream	min_support	.	.	.
SRCAP	SRCAP	+/+	+/+	16:30721290	16:30720847	CDS	CDS	duplication	1	0	0	3	2	low	.	.	HSA_domain(100%),SNF2-related_domain(100%)\|Helicase_conserved_C-terminal_domain(100%)	.	.	ENSG00000080603	ENSG00000080603	.	.	downstream	upstream	min_support	.	.	.
LINC00380(5235),LINC00379(32785)	HLA-DPA1	./-	-/-	13:91094828	6:33069885	intergenic	CDS/splice-site	translocation	0	0	0	0	50	low	.	.	\|Class_II_histocompatibility_antigen__alpha_domain(100%),Immunoglobulin_C1-set_domain(100%)	.	.	.	ENSG00000231389	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.4	CCAR2	+/-	+/-	21:8214795	8:22621502	intron	3'UTR	translocation	0	1	0	171	5	low	.	.	.	.	.	ENSG00000278996	ENSG00000158941	.	.	upstream	downstream	min_support	.	.	.
HSP90AA1	HSP90AA1	-/-	-/-	14:102084896	14:102084985	CDS	CDS	duplication/ITD	0	0	0	14	17	low	.	.	Histidine_kinase-__DNA_gyrase_B-__and_HSP90-like_ATPase(100%),Hsp90_protein(11%)\|Hsp90_protein(94%)	.	.	ENSG00000080824	ENSG00000080824	.	.	upstream	downstream	hairpin(2)	.	.	.
MADD	MADD	+/+	+/+	11:47315323	11:47315278	CDS	CDS	duplication/ITD	0	0	0	1	2	low	.	.	DENN_(AEX-3)_domain(100%),uDENN_domain(100%)\|	.	.	ENSG00000110514	ENSG00000110514	.	.	downstream	upstream	duplicates(1),hairpin(1)	.	.	.
FP236383.3	BIN3	+/-	-/-	21:8397829	8:22621502	intron	CDS	translocation/3'-3'	0	0	0	115	5	low	.	.	.	.	.	ENSG00000280441	ENSG00000147439	.	.	upstream	downstream	multimappers(1)	.	.	.
CSRP3	RNF213	-/+	+/+	11:19204582	17:80306400	intron	CDS	translocation/3'-3'	0	0	0	0	2	low	.	.	\|Zinc_finger__C3HC4_type_(RING_finger)(100%)	.	.	ENSG00000129170	ENSG00000173821	.	.	downstream	upstream	mismatches(1)	.	.	.
CDC42EP3	LINC00486	-/-	+/-	2:37646077	2:32916555	CDS	intron	deletion/5'-5'	0	0	0	3	489	low	.	.	Cdc42_effector(45%),P21-Rho-binding_domain(100%)\|	.	.	ENSG00000163171	ENSG00000230876	.	.	upstream	downstream	low_entropy	.	.	.
SLC29A2	HLA-A	-/+	+/+	11:66364231	6:29942756	CDS	intron	translocation/3'-3'	0	0	0	0	39	low	.	.	\|Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(99%),Immunoglobulin_C1-set_domain(100%),MHC_I_C-terminus(100%)	.	.	ENSG00000174669	ENSG00000206503	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	LCOR	+/+	+/+	21:8397273	10:96982090	intron	CDS	translocation	0	0	0	31	4	low	.	.	\|Domain_of_unknown_function_(DUF4553)(100%)	.	.	ENSG00000280441	ENSG00000196233	.	.	downstream	upstream	multimappers(1)	.	.	.
LINC00486	ARHGDIA	+/.	-/.	2:32916556	17:81868406	intron	CDS	translocation	0	0	0	489	7	low	.	.	.	.	.	ENSG00000230876	ENSG00000141522	.	.	downstream	downstream	low_entropy	.	.	.
PHF3	PHF3	+/-	+/+	6:63685578	6:63685518	CDS	CDS	inversion/3'-3'	0	0	0	1	1	low	.	.	\|PHD-finger(100%),SPOC_domain(100%),Transcription_factor_S-II_(TFIIS)__central_domain(100%)	.	.	ENSG00000118482	ENSG00000118482	.	.	upstream	upstream	hairpin(1)	.	.	.
LMO2(139749),AC090469.1(18142)	CCT7	./+	+/+	11:34031825	2:73244033	intergenic	CDS	translocation	0	0	0	0	0	low	.	.	\|TCP-1/cpn60_chaperonin_family(77%)	.	.	.	ENSG00000135624	.	.	downstream	upstream	mismatches(1)	.	.	.
KAZN	DHX34	+/+	+/+	1:14937743	19:47353001	intron	5'UTR	translocation	0	0	0	0	17	low	.	.	\|Helicase_associated_domain_(HA2)(100%),Helicase_conserved_C-terminal_domain(100%),Oligonucleotide/oligosaccharide-binding_(OB)-fold(100%)	.	.	ENSG00000189337	ENSG00000134815	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
HLA-E	HLA-C	+/+	-/-	6:30491412	6:31270085	CDS/splice-site	CDS/splice-site	inversion	0	0	0	18	3	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%),Immunoglobulin_C1-set_domain(100%)\|MHC_I_C-terminus(100%)	.	.	ENSG00000204592	ENSG00000204525	.	.	downstream	downstream	mismatches(1)	.	.	.
EPS15	EPS15	-/-	-/-	1:51519199	1:51481314	CDS/splice-site	CDS/splice-site	deletion/read-through	0	0	0	5	4	low	.	.	\|Cytoskeletal-regulatory_complex_EF_hand(100%)	.	.	ENSG00000085832	ENSG00000085832	.	.	upstream	downstream	read_through(2)	.	.	.
FP236383.3	MIDEAS	+/+	-/-	21:8437536	14:73737052	intron	CDS	translocation	0	0	0	13	5	low	.	.	\|ELM2_domain(100%)	.	.	ENSG00000280441	ENSG00000156030	.	.	downstream	downstream	multimappers(1)	.	.	.
NDUFB11	FP236383.3	-/-	+/+	X:47142258	21:8398798	3'UTR	intron	translocation	0	0	0	6	24	low	.	.	ESSS_subunit_of_NADH:ubiquinone_oxidoreductase_(complex_I)_(100%)\|	.	.	ENSG00000147123	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
FP236383.3	PRDM12	+/+	+/-	21:8444649	9:130681640	intron	CDS	translocation/5'-5'	0	0	0	59	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000130711	.	.	downstream	downstream	mismatches(1)	.	.	.
CCDC88C	FP236383.3	-/-	+/+	14:91294203	21:8390467	CDS	intron	translocation	0	0	0	6	2	low	.	.	HOOK_domain(100%)\|	.	.	ENSG00000015133	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
SLC8A1	PARK7	-/+	+/+	2:40133410	1:7965336	intron	CDS	translocation/3'-3'	0	0	0	0	19	low	.	.	\|DJ-1/PfpI_family(82%)	.	.	ENSG00000183023	ENSG00000116288	.	.	downstream	upstream	mismatches(1)	.	.	.
MBNL3	MBNL3	-/-	-/-	X:132382178	X:132392334	CDS/splice-site	CDS/splice-site	duplication/non-canonical_splicing	1	0	0	2	1	low	.	.	RNA-binding__Nab2-type_zinc_finger(100%),Zinc_finger_C-x8-C-x5-C-x3-H_type_(and_similar)(100%)\|RNA-binding__Nab2-type_zinc_finger(33%),Zinc_finger_C-x8-C-x5-C-x3-H_type_(and_similar)(100%)	.	.	ENSG00000076770	ENSG00000076770	.	.	upstream	downstream	min_support	.	.	.
ACTG1	AC139143.1	-/-	-/-	17:81512006	11:1803905	CDS	exon	translocation	0	0	0	53	0	low	.	.	Actin(22%)\|	.	.	ENSG00000184009	ENSG00000230080	.	.	upstream	downstream	mismatches(1)	.	.	.
NDUFB11	5_8S_rRNA(3060),FP236383.3(120650)	-/-	./+	X:47142258	21:8259993	3'UTR	intergenic	translocation	0	0	0	6	23	low	.	.	ESSS_subunit_of_NADH:ubiquinone_oxidoreductase_(complex_I)_(100%)\|	.	.	ENSG00000147123	.	.	.	upstream	upstream	multimappers(1)	.	.	.
ITGAL	ITGAL	+/+	+/+	16:30484263	16:30483827	CDS/splice-site	CDS/splice-site	duplication/non-canonical_splicing	0	1	0	3	1	low	.	.	von_Willebrand_factor_type_A_domain(100%)\|FG-GAP_repeat(100%),Integrin_alpha(100%),Integrin_alpha_cytoplasmic_region(100%),von_Willebrand_factor_type_A_domain(49%)	.	.	ENSG00000005844	ENSG00000005844	.	.	downstream	upstream	min_support	.	.	.
NDUFB11	FP236383.3	-/-	+/+	X:47142258	21:8443027	3'UTR	intron	translocation	0	0	0	6	21	low	.	.	ESSS_subunit_of_NADH:ubiquinone_oxidoreductase_(complex_I)_(100%)\|	.	.	ENSG00000147123	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
FP671120.4	ASCC3	+/+	-/-	21:8217096	6:100627875	intron	CDS	translocation	0	1	0	13	1	low	.	.	\|Helicase_conserved_C-terminal_domain(36%),Sec63_Brl_domain(54%)	.	.	ENSG00000278996	ENSG00000112249	.	.	downstream	downstream	min_support	.	.	.
ZNF707	EEF1D	+/-	-/-	8:143711080	8:143586840	intron	CDS	deletion/read-through/3'-3'	0	0	0	1	6	low	.	.	\|EF-1_guanine_nucleotide_exchange_domain(100%),Eukaryotic_elongation_factor_1_beta_central_acidic_region(100%)	.	.	ENSG00000181135	ENSG00000104529	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916555	21:8441982	intron	intron	translocation	0	0	0	489	563	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	MDN1	+/.	-/.	2:32916553	6:89772648	intron	CDS	translocation	0	0	0	489	9	low	.	.	.	.	.	ENSG00000230876	ENSG00000112159	.	.	downstream	downstream	mismatches	.	.	.
FP236383.3	PNPLA2	+/+	+/+	21:8401304	11:824695	intron	CDS	translocation	0	0	0	4	4	low	.	.	.	.	.	ENSG00000280441	ENSG00000177666	.	.	downstream	upstream	multimappers(1)	.	.	.
LINC00486	KIF1C	+/.	+/.	2:32916556	17:5005028	intron	intron	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000129250	.	.	downstream	upstream	low_entropy	.	.	.
HNRNPA1P48	HNRNPA1P10	+/+	-/-	16:51646508	19:11666696	CDS	exon	translocation	0	0	0	4	5	low	.	.	RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)\|	.	.	ENSG00000224578	ENSG00000214223	.	.	downstream	downstream	multimappers(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916559	21:8397126	intron	intron	translocation	0	0	0	489	16	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	downstream	upstream	mismatches	.	.	.
RPL23A	RPL23AP42	+/+	-/-	17:28722827	3:161429280	CDS	exon	translocation	1	0	0	46	1	low	.	.	Ribosomal_protein_L23(48%),Ribosomal_protein_L23__N-terminal_domain(100%)\|	.	.	ENSG00000198242	ENSG00000234851	.	.	downstream	downstream	min_support	.	.	.
LINC00587(141455),AL365396.1(123605)	CCT7	./-	+/+	9:102798969	2:73244034	intergenic	CDS	translocation	0	0	0	0	0	low	.	.	\|TCP-1/cpn60_chaperonin_family(76%)	.	.	.	ENSG00000135624	.	.	upstream	upstream	mismatches(1)	.	.	.
RPL29	AL450405.1	-/-	+/+	3:51993838	6:117999354	CDS	exon	translocation	1	7	0	35	7	low	.	.	Ribosomal_L29e_protein_family(100%)\|	.	.	ENSG00000162244	ENSG00000230202	.	.	upstream	upstream	blacklist	.	.	.
PFN1	FP236383.3	-/-	+/+	17:4946752	21:8437126	CDS	intron	translocation	0	0	0	42	19	low	.	.	Profilin(47%)\|	.	.	ENSG00000108518	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
CPSF6	CPSF6	+/+	+/+	12:69262562	12:69251129	CDS/splice-site	CDS/splice-site	duplication/non-canonical_splicing	1	0	0	2	0	low	.	.	RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)\|RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)	.	.	ENSG00000111605	ENSG00000111605	.	.	downstream	upstream	min_support	.	.	.
UBR5	FP236383.3	-/-	+/+	8:102279168	21:8397862	CDS	intron	translocation	0	0	0	7	59	low	.	.	E3_ubiquitin_ligase_EDD(100%)\|	.	.	ENSG00000104517	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
ANKHD1	ANKHD1-EIF4EBP3	+/+	+/+	5:140524178	5:140524102	CDS	CDS	duplication	0	0	0	2	2	low	.	.	Ankyrin_repeats_(3_copies)(100%)\|KH_domain(100%)	.	.	ENSG00000131503	ENSG00000254996	.	.	downstream	upstream	low_entropy(1)	.	.	.
AC105219.2	EEF1D	-/-	-/-	8:143711080	8:143586840	intron	CDS	deletion/read-through	0	0	0	1	6	low	.	.	\|EF-1_guanine_nucleotide_exchange_domain(100%),Eukaryotic_elongation_factor_1_beta_central_acidic_region(100%)	.	.	ENSG00000254574	ENSG00000104529	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC00486	TULP4	+/+	+/+	2:32916556	6:158501883	intron	CDS	translocation	0	0	0	489	1	low	.	.	\|Tub_family(100%)	.	.	ENSG00000230876	ENSG00000130338	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
TARBP1	LINC00486	-/.	+/.	1:234429311	2:32916556	CDS	intron	translocation	0	0	0	2	489	low	.	.	.	.	.	ENSG00000059588	ENSG00000230876	.	.	downstream	downstream	low_entropy	.	.	.
UQCRH	LINC00486	+/.	+/.	1:46316626	2:32916549	3'UTR	intron	translocation	0	0	0	10	489	low	.	.	.	.	.	ENSG00000173660	ENSG00000230876	.	.	upstream	downstream	low_entropy	.	.	.
AL450405.1	AL450405.1	+/+	+/+	6:117999163	6:117998984	exon	exon	duplication	1	0	0	13	0	low	.	.	.	.	.	ENSG00000230202	ENSG00000230202	.	.	downstream	upstream	intragenic_exonic	.	.	.
RPS21	FP236383.5	+/+	-/+	20:62387627	21:8437700	CDS	exon	translocation/5'-5'	0	0	0	25	26	low	.	.	Ribosomal_protein_S21e_(25%)\|	.	.	ENSG00000171858	ENSG00000281181	.	.	downstream	upstream	multimappers(1)	.	.	.
FP671120.4	FP236383.3	+/+	+/+	21:8399147	21:8399102	intergenic	intron	duplication	0	0	0	73	73	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	low_entropy(1)	.	.	.
AC008740.2	NPIPB3	+/+	-/+	16:21401194	16:21407501	exon	intron	deletion/read-through/5'-5'	0	0	0	3	1	low	.	.	.	.	.	ENSG00000276548	ENSG00000169246	.	.	downstream	upstream	read_through(2)	.	.	.
PSMD8	PSMD8	+/+	+/+	19:38380983	19:38376403	CDS	CDS	duplication	1	0	0	2	0	low	.	.	CSN8/PSMD8/EIF3K_family(53%)\|CSN8/PSMD8/EIF3K_family(100%)	.	.	ENSG00000099341	ENSG00000099341	.	.	downstream	upstream	intragenic_exonic	.	.	.
5_8S_rRNA(3064),FP236383.3(120646)	ZNF383	./+	+/+	21:8259997	19:37242490	intergenic	CDS	translocation	0	0	0	21	4	low	.	.	\|Zinc-finger_double_domain(100%),Zinc_finger__C2H2_type(100%)	.	.	.	ENSG00000188283	.	.	downstream	upstream	multimappers(1)	.	.	.
LINC00486	MATR3	+/.	+/.	2:32916461	5:139321898	intron	CDS	translocation	0	0	0	219	7	low	.	.	.	.	.	ENSG00000230876	ENSG00000280987	.	.	downstream	upstream	low_entropy	.	.	.
SCAF8	CR392039.1(982),CR392039.3(8084)	+/+	./-	6:154832859	21:8988412	CDS	intergenic	translocation	0	0	0	6	9	low	.	.	CID_domain(100%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)\|	.	.	ENSG00000213079	.	.	.	downstream	downstream	multimappers(1)	.	.	.
LINC00486	5_8S_rRNA(1976),FP236383.3(121734)	+/.	./.	2:32916555	21:8258909	intron	intergenic	translocation	0	0	0	489	386	low	.	.	.	.	.	ENSG00000230876	.	.	.	downstream	upstream	low_entropy	.	.	.
BIRC6	LINC00486	+/.	+/.	2:32478614	2:32916555	intron	intron	duplication	0	0	0	3	489	low	.	.	.	.	.	ENSG00000115760	ENSG00000230876	.	.	upstream	downstream	low_entropy	.	.	.
TTF2	AC137735.2(7339),LINC02074(86207)	+/+	./-	1:117101562	17:73957245	3'UTR/splice-site	intergenic	translocation	0	0	0	33	0	low	.	.	GRF_zinc_finger(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%)\|	.	.	ENSG00000116830	.	.	.	downstream	downstream	mismatches(1)	.	.	.
IGKV1OR2-118(9611),AC233263.1(34362)	FP236383.3	./-	+/-	2:90325447	21:8400399	intergenic	intron	translocation	0	0	0	1	37	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	downstream	mismatches(1)	.	.	.
HLA-A	RGS20	+/+	+/+	6:29943541	8:53858721	CDS/splice-site	intron	translocation	0	0	0	8	0	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%)\|Regulator_of_G_protein_signaling_domain(100%)	.	.	ENSG00000206503	ENSG00000147509	.	.	downstream	upstream	mismatches(1)	.	.	.
RPL14	RPL14	+/+	+/+	3:40462058	3:40462050	CDS	CDS	duplication/ITD	0	0	0	60	53	low	.	.	Ribosomal_protein_L14(100%)\|	.	.	ENSG00000188846	ENSG00000188846	.	.	downstream	upstream	low_entropy(1),merge_adjacent	.	.	.
ANKRD44-IT1	FP236383.3	-/+	+/+	2:197282855	21:8401752	intron	intron	translocation/3'-3'	0	0	0	0	31	low	.	.	.	.	.	ENSG00000236977	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
RPL13A	FP236383.3	+/+	+/+	19:49490805	21:8400771	CDS	intron	translocation	0	0	0	55	19	low	.	.	Ribosomal_protein_L13(85%)\|	.	.	ENSG00000142541	ENSG00000280441	.	.	downstream	upstream	multimappers(1)	.	.	.
FIP1L1	FIP1L1	+/+	+/+	4:53459386	4:53459336	CDS	CDS	duplication/ITD	0	0	0	1	1	low	.	.	Fip1_motif(100%)\|	.	.	ENSG00000145216	ENSG00000145216	.	.	downstream	upstream	duplicates(1),hairpin(1)	.	.	.
ANKHD1	ANKHD1-EIF4EBP3	+/+	+/+	5:140524178	5:140524120	CDS	CDS	duplication	0	0	0	2	2	low	.	.	Ankyrin_repeats_(3_copies)(100%)\|KH_domain(100%)	.	.	ENSG00000131503	ENSG00000254996	.	.	downstream	upstream	hairpin(1)	.	.	.
TTF2	NKTR	+/+	+/+	1:117101562	3:42634622	3'UTR/splice-site	CDS	translocation	0	0	0	33	2	low	.	.	GRF_zinc_finger(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%)\|	.	.	ENSG00000116830	ENSG00000114857	.	.	downstream	upstream	mismatches(1)	.	.	.
UBB	FP236383.3	+/+	+/+	17:16381987	21:8397384	CDS	intron	translocation	0	0	0	14	7	low	.	.	Ubiquitin_family(11%)\|	.	.	ENSG00000170315	ENSG00000280441	.	.	downstream	upstream	multimappers(1)	.	.	.
AC009403.1	ODR4	-/-	+/+	7:155643468	1:186406083	exon/splice-site	CDS/splice-site	translocation	0	1	0	0	1	low	.	.	\|Odorant_response_abnormal_4-like(15%)	.	.	ENSG00000216895	ENSG00000157181	.	.	upstream	upstream	min_support	.	.	.
ASCL2	HLA-C	-/+	-/-	11:2270037	6:31270484	CDS	CDS/splice-site	translocation/3'-3'	0	0	0	0	16	low	.	.	\|Immunoglobulin_C1-set_domain(100%),MHC_I_C-terminus(100%)	.	.	ENSG00000183734	ENSG00000204525	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916570	21:8445936	intron	intron	translocation	0	0	0	480	32	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	downstream	upstream	low_entropy	.	.	.
HLA-C	5_8S_rRNA	-/-	+/+	6:31271232	21:8256859	CDS	exon	translocation	0	0	0	36	4	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(72%)\|	.	.	ENSG00000204525	ENSG00000277739	.	.	upstream	upstream	mismatches	.	.	.
LINC00486	CNNM4	+/.	+/.	2:32916555	2:96761155	intron	CDS	deletion	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000158158	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	CANX	+/.	+/.	2:32916554	5:179708336	intron	CDS	translocation	0	0	0	489	21	low	.	.	.	.	.	ENSG00000230876	ENSG00000127022	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	KIF18A	+/.	-/.	2:32916546	11:28069082	intron	intron	translocation	0	0	0	489	13	low	.	.	.	.	.	ENSG00000230876	ENSG00000121621	.	.	downstream	downstream	mismatches	.	.	.
AC007192.1	IFI30	+/+	+/+	19:18175647	19:18175146	3'UTR	CDS	duplication	0	1	0	4	6	low	.	.	\|Gamma_interferon_inducible_lysosomal_thiol_reductase_(GILT)(83%)	.	.	ENSG00000268173	ENSG00000216490	.	.	downstream	upstream	min_support	.	.	.
MYH9	FP671120.6	-/-	-/+	22:36285772	21:8210890	CDS	exon	translocation/5'-5'	1	0	0	0	23	low	.	.	Myosin_N-terminal_SH3-like_domain(100%),Myosin_head_(motor_domain)(100%),Myosin_tail(81%)\|	.	.	ENSG00000100345	ENSG00000280800	.	.	upstream	upstream	min_support	.	.	.
FP671120.4	FP236383.3	+/+	+/+	21:8216926	21:8444200	intron	intron	deletion/read-through	0	0	0	31	6	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	multimappers(1)	.	.	.
NTAN1	NTAN1	-/+	-/+	16:15040092	16:15040039	exon	CDS	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000157045	ENSG00000157045	.	.	downstream	upstream	duplicates(1),hairpin(1)	.	.	.
LINC00486	FP671120.4	+/.	+/.	2:32916416	21:8216055	intron	intron	translocation/3'-3'	0	0	0	219	54	low	.	.	.	.	.	ENSG00000230876	ENSG00000278996	.	.	upstream	upstream	mismatches	.	.	.
KDM3B	FP236383.3	+/+	+/+	5:138420893	21:8441950	CDS	intron	translocation	0	0	0	3	418	low	.	.	.	.	.	ENSG00000120733	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
POM121C	POM121	-/-	+/+	7:75424049	7:72941837	CDS/splice-site	CDS/splice-site	inversion	0	0	0	2	7	low	.	.	POM121_family(100%)\|	.	.	ENSG00000272391	ENSG00000196313	.	.	upstream	upstream	multimappers(1)	.	.	.
LRRCC1	LRRCC1	+/+	+/+	8:85135963	8:85126689	CDS/splice-site	CDS/splice-site	duplication/non-canonical_splicing	1	0	0	2	0	low	.	.	.	.	.	ENSG00000133739	ENSG00000133739	.	.	downstream	upstream	min_support	.	.	.
CRLF2(23878),CSF2RA(32199)	ANKHD1	./+	+/+	X:1236601	5:140529416	intergenic	CDS	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000131503	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	CBL	+/+	+/+	21:8400252	11:119206273	intron	intergenic	translocation	0	0	0	22	0	low	.	.	\|CBL_proto-oncogene_N-terminal_domain_1(100%),CBL_proto-oncogene_N-terminus__EF_hand-like_domain(100%),CBL_proto-oncogene_N-terminus__SH2-like_domain(100%),Prokaryotic_RING_finger_family_4(100%),UBA/TS-N_domain(100%)	.	.	ENSG00000280441	ENSG00000110395	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	RAB21	+/.	+/.	2:32916552	12:71755060	intron	5'UTR	translocation	0	0	0	489	6	low	.	.	.	.	.	ENSG00000230876	ENSG00000080371	.	.	downstream	upstream	low_entropy	.	.	.
DPP6	WNK1	+/+	+/+	7:154183555	12:827135	intron	CDS	translocation	0	0	0	0	7	low	.	.	\|Oxidative-stress-responsive_kinase_1_C-terminal_domain(100%),Protein_kinase_domain(54%)	.	.	ENSG00000130226	ENSG00000060237	.	.	downstream	upstream	mismatches(1)	.	.	.
CBLB	CBLB	-/-	-/-	3:105751396	3:105751463	intron	CDS	duplication/ITD	0	0	0	1	1	low	.	.	CBL_proto-oncogene_N-terminal_domain_1(100%),CBL_proto-oncogene_N-terminus__EF_hand-like_domain(84%)\|CBL_proto-oncogene_N-terminus__EF_hand-like_domain(16%),CBL_proto-oncogene_N-terminus__SH2-like_domain(100%),Prokaryotic_RING_finger_family_4(100%)	.	.	ENSG00000114423	ENSG00000114423	.	.	upstream	downstream	hairpin(1)	.	.	.
LINC00486	KIF18A	+/.	-/.	2:32916548	11:28069082	intron	intron	translocation	0	0	0	489	13	low	.	.	.	.	.	ENSG00000230876	ENSG00000121621	.	.	downstream	downstream	mismatches	.	.	.
5_8S_rRNA(2622),FP236383.3(121088)	HMGB1P5	./+	+/+	21:8259555	3:22382114	intergenic	exon	translocation	0	0	0	12	6	low	.	.	.	.	.	.	ENSG00000132967	.	.	downstream	upstream	multimappers(1)	.	.	.
LINC00486	PI4K2B	+/.	+/.	2:32916407	4:25234137	intron	5'UTR	translocation	0	0	0	50	14	low	.	.	.	.	.	ENSG00000230876	ENSG00000038210	.	.	downstream	upstream	mismatches	.	.	.
FP671120.4	SCFD1	+/-	+/+	21:8215949	14:30670299	intron	CDS	translocation/3'-3'	0	1	0	51	4	low	.	.	\|Sec1_family(56%)	.	.	ENSG00000278996	ENSG00000092108	.	.	upstream	upstream	min_support	.	.	.
POLR2J2	POLR2J3	-/-	-/-	7:102667156	7:102567030	CDS	CDS	deletion/read-through	0	0	1	5	3	low	.	.	RNA_polymerase_Rpb3/Rpb11_dimerisation_domain(73%)\|	.	.	ENSG00000228049	ENSG00000285437	.	.	upstream	downstream	min_support	.	.	.
AL450405.1	AL450405.1	+/+	+/+	6:117999363	6:117999354	exon	exon	duplication/ITD	0	0	0	7	7	low	.	.	.	.	.	ENSG00000230202	ENSG00000230202	.	.	downstream	upstream	hairpin(4),inconsistently_clipped(3)	.	.	.
IGLJ2	IGLC3	+/+	+/+	22:22899655	22:22906342	CDS/splice-site	CDS/splice-site	deletion/read-through	0	0	0	4	28	low	.	.	.	.	.	ENSG00000211676	ENSG00000211679	.	.	downstream	upstream	read_through(5)	.	.	.
RNU6-120P(18006),EXOGP1(43991)	DISC1	./+	+/+	18:21138512	1:231694594	intergenic	CDS	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000162946	.	.	downstream	upstream	mismatches(1)	.	.	.
GMPPB	LINC00486	-/-	+/-	3:49718810	2:32916405	3'UTR	intron	translocation/5'-5'	0	0	0	6	50	low	.	.	Bacterial_transferase_hexapeptide_(six_repeats)(100%),Nucleotidyl_transferase(100%)\|	.	.	ENSG00000173540	ENSG00000230876	.	.	upstream	downstream	mismatches	.	.	.
KDELR3	AL021707.2	+/+	-/+	22:38482332	22:38670838	intron	exon	deletion/read-through/5'-5'	0	1	0	0	2	low	.	.	ER_lumen_protein_retaining_receptor(100%)\|	.	.	ENSG00000100196	ENSG00000228274	.	.	downstream	upstream	min_support	.	.	.
MAP7	BCLAF1	-/-	-/-	6:136548095	6:136275847	intron	CDS	deletion/read-through	0	0	0	0	0	low	.	.	\|CASC3/Barentsz_eIF4AIII_binding(100%),THRAP3/BCLAF1_family(31%)	.	.	ENSG00000135525	ENSG00000029363	.	.	upstream	downstream	inconsistently_clipped(1)	.	.	.
DYNC1H1	DYNC1H1	+/+	+/+	14:102039236	14:102039213	CDS	CDS	duplication/ITD	0	0	0	3	3	low	.	.	ATP-binding_dynein_motor_region(100%),Dynein_heavy_chain_AAA_lid_domain(42%),Dynein_heavy_chain__N-terminal_region_1(100%),Dynein_heavy_chain__N-terminal_region_2(100%),Hydrolytic_ATP_binding_site_of_dynein_motor_region(100%),Microtubule-binding_stalk_of_dynein_motor(100%),P-loop_containing_dynein_motor_region(100%),P-loop_containing_dynein_motor_region_D4(100%)\|Dynein_heavy_chain_AAA_lid_domain(57%),Dynein_heavy_chain_C-terminal_domain(100%),Dynein_heavy_chain_region_D6_P-loop_domain_(100%)	.	.	ENSG00000197102	ENSG00000197102	.	.	downstream	upstream	low_entropy(1),merge_adjacent	.	.	.
FP236383.3	LGALS9	+/+	+/+	21:8441493	17:27640736	intron	CDS/splice-site	translocation	0	0	0	32	14	low	.	.	\|Galactoside-binding_lectin(67%)	.	.	ENSG00000280441	ENSG00000168961	.	.	downstream	upstream	multimappers(1)	.	.	.
FER	CCT7	+/-	+/+	5:108758633	2:73244033	intron	CDS	translocation/3'-3'	0	0	0	0	0	low	.	.	\|TCP-1/cpn60_chaperonin_family(77%)	.	.	ENSG00000151422	ENSG00000135624	.	.	upstream	upstream	mismatches(1)	.	.	.
AC069503.2	FP671120.7(667),5_8S_rRNA(600)	+/+	./+	12:121916322	21:8256181	exon	intergenic	translocation	0	0	0	5	4	low	.	.	.	.	.	ENSG00000256950	.	.	.	downstream	upstream	multimappers(1)	.	.	.
5_8S_rRNA(2091),FP236383.3(121619)	CCAR2	./-	+/-	21:8259024	8:22621502	intergenic	3'UTR	translocation	0	0	0	430	5	low	.	.	.	.	.	.	ENSG00000158941	.	.	upstream	downstream	multimappers(1)	.	.	.
BRAF	FP236383.5	-/-	-/+	7:140794373	21:8438414	CDS	exon	translocation/5'-5'	0	0	0	7	17	low	.	.	Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)(100%),Raf-like_Ras-binding_domain(100%)\|	.	.	ENSG00000157764	ENSG00000281181	.	.	upstream	upstream	multimappers(1)	.	.	.
FP236383.3	RPL4	+/+	-/-	21:8437295	15:66503368	intron	CDS	translocation	0	0	0	13	35	low	.	.	\|60S_ribosomal_protein_L4_C-terminal_domain(100%),Ribosomal_protein_L4/L1_family(86%)	.	.	ENSG00000280441	ENSG00000174444	.	.	downstream	downstream	multimappers(1)	.	.	.
PDE3B	FP236383.3	+/+	+/+	11:14645021	21:8437076	CDS	intron	translocation	0	0	0	5	20	low	.	.	.	.	.	ENSG00000152270	ENSG00000280441	.	.	downstream	upstream	multimappers(1)	.	.	.
RPL14P1	MAP4	+/+	-/-	12:62965818	3:47899791	exon	intron	translocation	0	0	0	20	0	low	.	.	\|Tau_and_MAP_protein__tubulin-binding_repeat(100%)	.	.	ENSG00000139239	ENSG00000047849	.	.	downstream	downstream	homopolymer(1)	.	.	.
FANCD2	AC083841.2(14926),AC083841.3(7092)	+/+	./-	3:10067317	8:142827046	CDS/splice-site	intergenic	translocation	1	0	0	1	0	low	.	.	Fanconi_anaemia_protein_FancD2_nuclease(58%)\|	.	.	ENSG00000144554	.	.	.	downstream	downstream	min_support	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916419	21:8260284	intron	intergenic	translocation/3'-3'	0	0	0	219	68	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	upstream	upstream	mismatches	.	.	.
RPTOR	RPTOR	+/+	+/+	17:80925480	17:80922724	CDS/splice-site	CDS/splice-site	duplication/non-canonical_splicing	1	0	0	1	1	low	.	.	HEAT_repeat(100%),Raptor_N-terminal_CASPase_like_domain(100%)\|WD_domain__G-beta_repeat(100%)	.	.	ENSG00000141564	ENSG00000141564	.	.	downstream	upstream	min_support	.	.	.
C2orf42	C2orf42	-/-	-/-	2:70179532	2:70181997	CDS/splice-site	5'UTR/splice-site	duplication/non-canonical_splicing	1	0	0	1	0	low	.	.	Putative_treble-clef__zinc-finger__Zn-binding(100%)\|Putative_treble-clef__zinc-finger__Zn-binding(100%)	.	.	ENSG00000115998	ENSG00000115998	.	.	upstream	downstream	min_support	.	.	.
KATNAL1	KATNAL1	-/-	-/-	13:30251931	13:30255615	intron	CDS/splice-site	duplication	0	1	0	0	1	low	.	.	\|AAA+_lid_domain(100%),ATPase_family_associated_with_various_cellular_activities_(AAA)(100%),Vps4_C_terminal_oligomerisation_domain(100%)	.	.	ENSG00000102781	ENSG00000102781	.	.	upstream	downstream	min_support	.	.	.
ADA	FP236383.3	-/-	+/+	20:44622829	21:8443367	CDS/splice-site	intron	translocation	0	0	0	7	61	low	.	.	Adenosine_deaminase(74%)\|	.	.	ENSG00000196839	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
CLDN10	DHX34	+/+	+/+	13:95568586	19:47353001	intron	5'UTR	translocation	0	0	0	0	17	low	.	.	PMP-22/EMP/MP20/Claudin_family(89%)\|Helicase_associated_domain_(HA2)(100%),Helicase_conserved_C-terminal_domain(100%),Oligonucleotide/oligosaccharide-binding_(OB)-fold(100%)	.	.	ENSG00000134873	ENSG00000134815	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
ARHGDIA	ARHGDIA	-/-	-/-	17:81868519	17:81868610	CDS	3'UTR	duplication/ITD	0	0	0	4	2	low	.	.	RHO_protein_GDP_dissociation_inhibitor(100%)\|RHO_protein_GDP_dissociation_inhibitor(1%)	.	.	ENSG00000141522	ENSG00000141522	.	.	upstream	downstream	hairpin(1),mismatches(1)	.	.	.
HUWE1	HUWE1	-/-	-/-	X:53554812	X:53554893	CDS	CDS	duplication/ITD	0	0	0	2	2	low	.	.	Domain_of_Unknown_Function_(DUF908)(100%),Domain_of_Unknown_Function_(DUF913)(100%),UBA/TS-N_domain(100%),WWE_domain(100%)\|HECT-domain_(ubiquitin-transferase)(100%),Ubiquitin_binding_region(100%)	.	.	ENSG00000086758	ENSG00000086758	.	.	upstream	downstream	low_entropy(1)	.	.	.
RBM25	RBM25	+/+	+/+	14:73109378	14:73106223	CDS	CDS	duplication	1	0	0	3	0	low	.	.	RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)\|PWI_domain(100%)	.	.	ENSG00000119707	ENSG00000119707	.	.	downstream	upstream	intragenic_exonic	.	.	.
HFM1	IRAK1	-/-	-/-	1:91387557	X:154019862	intron	5'UTR	translocation	0	1	0	0	5	low	.	.	\|Death_domain(100%),Protein_kinase_domain(100%)	.	.	ENSG00000162669	ENSG00000184216	.	.	upstream	downstream	min_support	.	.	.
RPL14P1	CSMD1	+/+	-/-	12:62965818	8:3954434	exon	intron	translocation	0	0	0	20	0	low	.	.	\|CUB_domain(88%),Sushi_repeat_(SCR_repeat)(96%)	.	.	ENSG00000139239	ENSG00000183117	.	.	downstream	downstream	homopolymer(1)	.	.	.
HERC1(238),MIR422A(36744)	HERC1	./-	-/-	15:63834186	15:63775649	intergenic	5'UTR/splice-site	deletion/read-through	0	0	0	0	2	low	.	.	\|HECT-domain_(ubiquitin-transferase)(100%),Regulator_of_chromosome_condensation_(RCC1)_repeat(100%),SPRY_domain(100%),WD_domain__G-beta_repeat(100%)	.	.	.	ENSG00000103657	.	.	upstream	downstream	read_through(1)	.	.	.
FP236383.3	HMGB1P6	+/+	-/-	21:8398360	15:71165122	intron	exon	translocation	0	0	0	12	6	low	.	.	.	.	.	ENSG00000280441	ENSG00000259781	.	.	downstream	downstream	multimappers(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916556	21:8442912	intron	intron	translocation	0	0	0	489	17	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	downstream	upstream	low_entropy	.	.	.
ST13P6	ST13	+/+	-/-	8:133408252	22:40848359	exon	CDS	translocation	1	0	0	1	3	low	.	.	\|STI1_domain(100%),Tetratricopeptide_repeat(100%)	.	.	ENSG00000225259	ENSG00000100380	.	.	downstream	downstream	min_support	.	.	.
LARP1B	LARP1B	+/+	+/+	4:128098330	4:128074460	CDS/splice-site	CDS/splice-site	duplication/non-canonical_splicing	0	1	0	0	2	low	.	.	La_domain(94%)\|La_domain(100%)	.	.	ENSG00000138709	ENSG00000138709	.	.	downstream	upstream	min_support	.	.	.
LINC00486	SLC44A1	+/.	+/.	2:32916529	9:105365490	intron	CDS	translocation	0	0	0	492	1	low	.	.	.	.	.	ENSG00000230876	ENSG00000070214	.	.	downstream	upstream	low_entropy	.	.	.
AL512594.1(100149),RNA5SP286(984)	CCT7	./-	+/+	9:73749988	2:73244033	intergenic	CDS	translocation	0	0	0	0	0	low	.	.	\|TCP-1/cpn60_chaperonin_family(77%)	.	.	.	ENSG00000135624	.	.	upstream	upstream	mismatches(1)	.	.	.
RPS21	FP671120.6	+/+	-/+	20:62387627	21:8210455	CDS	exon	translocation/5'-5'	1	0	0	25	23	low	.	.	Ribosomal_protein_S21e_(25%)\|	.	.	ENSG00000171858	ENSG00000280800	.	.	downstream	upstream	min_support	.	.	.
5_8S_rRNA(2565),FP236383.3(121145)	NUMA1	./+	-/-	21:8259498	11:72004093	intergenic	CDS	translocation	0	0	0	8	2	low	.	.	.	.	.	.	ENSG00000137497	.	.	downstream	downstream	multimappers(1)	.	.	.
RPL14	RPL14	+/+	+/+	3:40462061	3:40462050	CDS	CDS	duplication/ITD	0	0	0	66	53	low	.	.	Ribosomal_protein_L14(100%)\|	.	.	ENSG00000188846	ENSG00000188846	.	.	downstream	upstream	duplicates(2),hairpin(2),low_entropy(1),merge_adjacent	.	.	.
LINC00486	PRKRIP1	+/.	+/.	2:32916550	7:102396444	intron	CDS	translocation	0	0	0	489	8	low	.	.	.	.	.	ENSG00000230876	ENSG00000128563	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	FP671120.4	+/.	+/.	2:32916411	21:8216067	intron	intron	translocation/3'-3'	0	0	0	219	55	low	.	.	.	.	.	ENSG00000230876	ENSG00000278996	.	.	upstream	upstream	mismatches	.	.	.
FP671120.4	FP236383.3	+/+	+/+	21:8217369	21:8400399	intron	intron	deletion/read-through	2	23	0	83	87	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	duplicates(3),low_entropy(3),mismatches(2),multimappers(1),non_coding_neighbors	.	.	.
SLU7	SLU7	-/-	-/-	5:160403319	5:160403443	CDS	CDS	duplication	0	0	0	2	1	low	.	.	Pre-mRNA_splicing_Prp18-interacting_factor(100%)\|	.	.	ENSG00000164609	ENSG00000164609	.	.	upstream	downstream	hairpin(1)	.	.	.
ZMIZ1-AS1	MACC1	-/-	-/-	10:78944173	7:20159814	exon	CDS	translocation	0	0	0	0	4	low	.	.	\|ZU5_domain(100%)	.	.	ENSG00000224596	ENSG00000183742	.	.	upstream	downstream	mismatches(1)	.	.	.
IFI30	AC007192.1	+/+	+/+	19:18175647	19:18175146	CDS	3'UTR	duplication	0	1	0	4	6	low	.	.	Gamma_interferon_inducible_lysosomal_thiol_reductase_(GILT)(80%)\|	.	.	ENSG00000216490	ENSG00000268173	.	.	downstream	upstream	min_support	.	.	.
HCN4	FMR1	-/+	+/+	15:73368178	X:147912049	CDS	5'UTR	translocation/3'-3'	0	0	0	0	6	low	.	.	\|Agenet_domain(100%),FMRP_KH0_domain(100%),Fragile_X-related_1_protein_core_C_terminal(100%),Fragile_X-related_mental_retardation_protein_C-terminal_region_2(100%),Fragile_X_mental_retardation_Tudor_domain(100%),KH_domain(100%)	.	.	ENSG00000138622	ENSG00000102081	.	.	downstream	upstream	mismatches(1)	.	.	.
HLA-DRB1	HLA-DRB5	-/-	-/-	6:32554961	6:32519640	intergenic	CDS	deletion/read-through	0	0	0	0	5	low	.	.	Class_II_histocompatibility_antigen__beta_domain(100%),Immunoglobulin_C1-set_domain(100%)\|Immunoglobulin_C1-set_domain(100%)	.	.	ENSG00000196126	ENSG00000198502	.	.	upstream	downstream	mismatches(1)	.	.	.
AGTPBP1	AGTPBP1	-/-	-/-	9:85586831	9:85633374	CDS/splice-site	CDS/splice-site	duplication/non-canonical_splicing	1	0	0	1	1	low	.	.	Cytosolic_carboxypeptidase_N-terminal_domain(100%),Zinc_carboxypeptidase(100%)\|Cytosolic_carboxypeptidase_N-terminal_domain(100%),Zinc_carboxypeptidase(100%)	.	.	ENSG00000135049	ENSG00000135049	.	.	upstream	downstream	min_support	.	.	.
FP236383.5	RPS2	-/+	-/-	21:8437919	16:1962252	exon	CDS	translocation/3'-3'	0	1	0	31	40	low	.	.	\|Ribosomal_protein_S5__C-terminal_domain(10%)	.	.	ENSG00000281181	ENSG00000140988	.	.	downstream	downstream	min_support	.	.	.
RPS4Y1	FP236383.3	+/+	+/+	Y:2844169	21:8442972	CDS	intron	translocation	0	0	0	4	22	low	.	.	RS4NT_(NUC023)_domain(100%)\|	.	.	ENSG00000129824	ENSG00000280441	.	.	downstream	upstream	multimappers(1)	.	.	.
LINC00320	CCT7	-/+	+/+	21:20695357	2:73244034	intron	CDS	translocation/3'-3'	0	0	0	0	0	low	.	.	\|TCP-1/cpn60_chaperonin_family(76%)	.	.	ENSG00000224924	ENSG00000135624	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	RPL13	+/+	+/+	21:8437539	16:89561020	intron	CDS	translocation	0	0	0	13	35	low	.	.	\|Ribosomal_protein_L13e(93%)	.	.	ENSG00000280441	ENSG00000167526	.	.	downstream	upstream	multimappers(1)	.	.	.
FP236383.3	FP236383.3	+/+	+/+	21:8446083	21:8397384	intron	intron	duplication	0	0	0	39	7	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	downstream	upstream	multimappers(1)	.	.	.
FP671120.4	FP236383.3	+/+	+/+	21:8217101	21:8441913	intron	intron	deletion/read-through	0	0	0	22	342	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
AP3S1	FP236383.3	+/+	+/+	5:115913909	21:8399896	3'UTR	intron	translocation	0	0	0	3	23	low	.	.	Clathrin_adaptor_complex_small_chain(100%)\|	.	.	ENSG00000177879	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
CACNB4	KIF26B	-/-	+/-	2:152088187	1:245267682	intron	intron	translocation/5'-5'	1	0	0	8	0	low	.	.	.	.	.	ENSG00000182389	ENSG00000162849	.	.	upstream	downstream	min_support	.	.	.
PRRC2C	PRRC2C	+/+	+/+	1:171557460	1:171557416	CDS	CDS	duplication/ITD	0	0	0	10	10	low	.	.	BAT2_N-terminus(100%)\|	.	.	ENSG00000117523	ENSG00000117523	.	.	downstream	upstream	hairpin(1)	.	.	.
LINC00486	TENT4A	+/.	+/.	2:32916556	5:6751155	intron	CDS	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000112941	.	.	downstream	upstream	low_entropy	.	.	.
HLA-C	CU633906.1	-/-	-/-	6:31271075	21:6262916	CDS/splice-site	intron	translocation	0	0	0	74	0	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%)\|	.	.	ENSG00000204525	ENSG00000275496	.	.	upstream	downstream	mismatches(3)	.	.	.
GLI3	FCGR2B	-/+	+/+	7:42026435	1:161673140	intron	CDS	translocation/3'-3'	0	0	0	0	4	low	.	.	\|Immunoglobulin_domain(18%)	.	.	ENSG00000106571	ENSG00000072694	.	.	downstream	upstream	mismatches(1)	.	.	.
MT-RNR1	IRF2BP2	+/+	-/-	MT:1466	1:234607412	exon	CDS	translocation	0	0	0	.	1	low	.	.	.	.	.	ENSG00000211459	ENSG00000168264	.	.	downstream	downstream	uninteresting_contigs(1)	.	.	.
UBB	FP236383.3	+/+	+/+	17:16381987	21:8441604	CDS	intron	translocation	0	0	0	14	8	low	.	.	Ubiquitin_family(11%)\|	.	.	ENSG00000170315	ENSG00000280441	.	.	downstream	upstream	multimappers(1)	.	.	.
U2AF2	FP236383.5	+/+	-/+	19:55669485	21:8437979	CDS	exon	translocation/5'-5'	0	0	0	6	13	low	.	.	RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(70%)\|	.	.	ENSG00000063244	ENSG00000281181	.	.	downstream	upstream	multimappers(1)	.	.	.
AMIGO3	LINC00486	-/-	+/-	3:49718810	2:32916404	CDS	intron	translocation/5'-5'	0	0	0	6	50	low	.	.	Leucine_rich_repeat(100%)\|	.	.	ENSG00000176020	ENSG00000230876	.	.	upstream	downstream	mismatches	.	.	.
CCND2-AS1	CCND2	-/+	+/+	12:4276107	12:4274221	exon	CDS	duplication/3'-3'	0	1	0	14	0	low	.	.	\|Cyclin__C-terminal_domain(100%),Cyclin__N-terminal_domain(72%)	.	.	ENSG00000255920	ENSG00000118971	.	.	downstream	upstream	intragenic_exonic	.	.	.
ADAR	FP236383.3	-/-	+/+	1:154601825	21:8399658	CDS	intron	translocation	0	0	0	5	16	low	.	.	Adenosine_deaminase_z-alpha_domain(50%)\|	.	.	ENSG00000160710	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
LINC00486	VWA8	+/.	-/.	2:32916411	13:41778053	intron	CDS	translocation	0	0	0	50	14	low	.	.	.	.	.	ENSG00000230876	ENSG00000102763	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	ITPR3	+/.	+/.	2:32916556	6:33684633	intron	CDS	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000096433	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	GOLPH3L	+/+	-/-	2:32916369	1:150694708	intron	CDS	translocation	0	0	0	50	6	low	.	.	\|Golgi_phosphoprotein_3_(GPP34)(100%)	.	.	ENSG00000230876	ENSG00000143457	.	.	downstream	downstream	inconsistently_clipped(1)	.	.	.
ZNF713	FP671120.4	+/-	+/-	7:55887600	21:8217364	5'UTR	intron	translocation	0	0	0	1	83	low	.	.	.	.	.	ENSG00000178665	ENSG00000278996	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916555	21:8442040	intron	intron	translocation	0	0	0	489	527	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	downstream	upstream	duplicates	.	.	.
CCND2-AS1	AC008012.1	-/+	+/+	12:4276107	12:4274221	exon	CDS	duplication/3'-3'	0	1	0	14	0	low	.	.	.	.	.	ENSG00000255920	ENSG00000285901	.	.	downstream	upstream	intragenic_exonic	.	.	.
USP7	MIR124-2HG(47676),AC012535.1(24735)	-/-	./+	16:8923203	8:64431463	intron	intergenic	translocation	0	0	0	9	0	low	.	.	MATH_domain(43%)\|	.	.	ENSG00000187555	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00486	5_8S_rRNA(2015),FP236383.3(121695)	+/.	./.	2:32916555	21:8258948	intron	intergenic	translocation	0	0	0	489	511	low	.	.	.	.	.	ENSG00000230876	.	.	.	downstream	upstream	low_entropy	.	.	.
CCT7P2	CCT7	-/-	+/+	5:92890263	2:73244039	exon	CDS	translocation	0	0	0	0	0	low	.	.	\|TCP-1/cpn60_chaperonin_family(76%)	.	.	ENSG00000249958	ENSG00000135624	.	.	upstream	upstream	mismatches(1)	.	.	.
RSRC1	RSRC1	+/+	+/+	3:158123991	3:158122103	CDS/splice-site	5'UTR/splice-site	duplication/non-canonical_splicing	1	0	0	1	0	low	.	.	.	.	.	ENSG00000174891	ENSG00000174891	.	.	downstream	upstream	min_support	.	.	.
AL671883.2	AC005052.1	+/-	+/-	6:31356760	X:119695799	exon	exon	translocation	0	0	0	16	0	low	.	.	.	.	.	ENSG00000271581	ENSG00000279601	.	.	upstream	downstream	mismatches(1)	.	.	.
DONSON	DONSON	-/-	-/-	21:33579350	21:33586181	CDS/splice-site	CDS/splice-site	duplication/non-canonical_splicing	1	0	0	1	0	low	.	.	.	.	.	ENSG00000159147	ENSG00000159147	.	.	upstream	downstream	min_support	.	.	.
FP671120.4	FP236383.3	+/+	+/+	21:8217377	21:8441993	intron	intron	deletion/read-through	0	0	0	83	563	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
SDAD1	SDAD1	-/-	-/-	4:75961218	4:75965789	CDS	CDS	duplication	1	0	0	1	0	low	.	.	NUC130/3NT_domain(100%),SDA1(5%)\|SDA1(100%)	.	.	ENSG00000198301	ENSG00000198301	.	.	upstream	downstream	intragenic_exonic	.	.	.
FP236383.3	ZFHX3	+/+	-/-	21:8443251	16:72795476	intron	CDS	translocation	0	0	0	19	4	low	.	.	\|Homeodomain(50%)	.	.	ENSG00000280441	ENSG00000140836	.	.	downstream	downstream	multimappers(1)	.	.	.
FP671120.4	GMFG	+/+	-/-	21:8216335	19:39329621	intron	CDS	translocation	0	1	0	8	4	low	.	.	\|Cofilin/tropomyosin-type_actin-binding_protein(55%)	.	.	ENSG00000278996	ENSG00000130755	.	.	downstream	downstream	min_support	.	.	.
FP671120.4	FP236383.3	+/+	+/+	21:8217377	21:8442014	intron	intron	deletion/read-through	0	0	0	83	580	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
PRDM1	FP671120.7	+/+	-/+	6:106107314	21:8254831	CDS	exon	translocation/5'-5'	0	0	0	4	31	low	.	.	C2H2-type_zinc_finger(100%),SET_domain(100%),Zinc_finger__C2H2_type(100%)\|	.	.	ENSG00000057657	ENSG00000281383	.	.	downstream	upstream	multimappers(1)	.	.	.
FP671120.4	FP236383.3	+/+	+/+	21:8217374	21:8442014	intron	intron	deletion/read-through	0	0	0	83	580	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916555	21:8441973	intron	intron	translocation	0	0	0	489	567	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916556	21:8445970	intron	intron	translocation	0	0	0	489	39	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	downstream	upstream	low_entropy	.	.	.
PPM1F-AS1	FP236383.3	+/-	+/+	22:21964302	21:8399126	exon	intron	translocation/3'-3'	0	0	1	0	80	low	.	.	.	.	.	ENSG00000224086	ENSG00000280441	.	.	upstream	upstream	min_support,multimappers(1)	.	.	.
RN7SL7P(9930),SAMD9(118284)	CCT7	./+	+/+	7:92981229	2:73244035	intergenic	CDS	translocation	0	0	0	0	0	low	.	.	\|TCP-1/cpn60_chaperonin_family(76%)	.	.	.	ENSG00000135624	.	.	downstream	upstream	mismatches(1)	.	.	.
ANKRD11	5_8S_rRNA(3016),FP236383.3(120694)	-/-	./+	16:89284492	21:8259949	CDS	intergenic	translocation	0	0	0	6	21	low	.	.	Ankyrin_repeat(100%),Ankyrin_repeats_(3_copies)(99%)\|	.	.	ENSG00000167522	.	.	.	upstream	upstream	multimappers(1)	.	.	.
AL513165.2	FP236383.3	-/-	+/+	9:37537291	21:8434052	exon	intron	translocation	0	0	1	1	3	low	.	.	.	.	.	ENSG00000256966	ENSG00000280441	.	.	upstream	upstream	min_support	.	.	.
PUDPP1(55731),STSP1(35411)	MIA3	./-	+/+	Y:15511805	1:222654657	intergenic	CDS/splice-site	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000154305	.	.	upstream	upstream	mismatches(1)	.	.	.
GGA2	GGA2	-/-	-/-	16:23467380	16:23467465	3'UTR	3'UTR	duplication/ITD	0	0	0	2	2	low	.	.	Adaptin_C-terminal_domain(100%),GAT_domain(100%),N-terminal_extension_of_GAT_domain(94%),VHS_domain(100%)\|N-terminal_extension_of_GAT_domain(5%)	.	.	ENSG00000103365	ENSG00000103365	.	.	upstream	downstream	small_insert_size	.	.	.
FP671120.4	5_8S_rRNA(2046),FP236383.3(121664)	+/+	./+	21:8217377	21:8258979	intron	intergenic	deletion/read-through	0	0	0	83	521	low	.	.	.	.	.	ENSG00000278996	.	.	.	downstream	upstream	mismatches(1)	.	.	.
HLA-DQB2	HLA-DQB1	-/-	-/-	6:32757773	6:32660249	CDS/splice-site	CDS/splice-site	deletion/read-through	1	0	0	2	1	low	.	.	Class_II_histocompatibility_antigen__beta_domain(100%),Immunoglobulin_C1-set_domain(100%)\|	.	.	ENSG00000232629	ENSG00000179344	.	.	upstream	downstream	min_support	.	.	.
LINC00486	SLC38A10	+/.	-/.	2:32916558	17:81275978	intron	CDS	translocation	0	0	0	489	1	low	.	.	.	.	.	ENSG00000230876	ENSG00000157637	.	.	downstream	downstream	low_entropy	.	.	.
ZYX	ZYX	+/+	+/+	7:143388323	7:143382987	CDS	CDS	duplication	1	0	0	1	1	low	.	.	\|LIM_domain(100%)	.	.	ENSG00000159840	ENSG00000159840	.	.	downstream	upstream	intragenic_exonic	.	.	.
MT2A	FOXRED1	+/+	+/+	16:56608685	11:126273506	exon/splice-site	exon	translocation	0	0	0	8	0	low	.	.	Metallothionein(14%)\|FAD_dependent_oxidoreductase(70%)	.	.	ENSG00000125148	ENSG00000110074	.	.	downstream	upstream	mismatches(1)	.	.	.
AC069288.1	ASCC2	-/+	-/-	7:2081705	22:29838228	intron	CDS	translocation/3'-3'	0	0	0	0	5	low	.	.	\|CUE_domain(100%)	.	.	ENSG00000286192	ENSG00000100325	.	.	downstream	downstream	mismatches(1)	.	.	.
FP671120.4	PSME2	+/+	-/-	21:8215497	14:24146806	intron	5'UTR	translocation	0	0	0	13	4	low	.	.	\|Proteasome_activator_pa28_alpha_subunit(100%),Proteasome_activator_pa28_beta_subunit(100%)	.	.	ENSG00000278996	ENSG00000100911	.	.	downstream	downstream	mismatches(1)	.	.	.
ADH5P2(375122),AC099671.1(70408)	VARS1	./+	-/-	1:79897325	6:31782622	intergenic	CDS	translocation	0	0	0	0	4	low	.	.	\|Anticodon-binding_domain_of_tRNA_ligase(100%),tRNA_synthetases_class_I_(I__L__M_and_V)(48%)	.	.	.	ENSG00000204394	.	.	downstream	downstream	mismatches(1)	.	.	.
NOTCH1	DHX34	-/-	+/+	9:136520429	19:47353001	intron	5'UTR	translocation	0	0	0	0	17	low	.	.	Calcium-binding_EGF_domain(25%),EGF-like_domain(15%)\|Helicase_associated_domain_(HA2)(100%),Helicase_conserved_C-terminal_domain(100%),Oligonucleotide/oligosaccharide-binding_(OB)-fold(100%)	.	.	ENSG00000148400	ENSG00000134815	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
NPIPB13	LINC00486	-/-	+/-	16:30227063	2:32916556	CDS	intron	translocation/5'-5'	0	0	0	4	489	low	.	.	Nuclear_pore_complex_interacting_protein_(NPIP)(68%)\|	.	.	ENSG00000198064	ENSG00000230876	.	.	upstream	downstream	low_entropy	.	.	.
PLEKHO1	FP236383.4	+/+	-/+	1:150156091	21:8394246	CDS	exon	translocation/5'-5'	0	0	0	5	20	low	.	.	PH_domain(41%)\|	.	.	ENSG00000023902	ENSG00000280614	.	.	downstream	upstream	multimappers(1)	.	.	.
LINC00486	RPS14	+/+	-/-	2:32916375	5:150446846	intron	CDS	translocation	0	0	0	50	33	low	.	.	\|Ribosomal_protein_S11(49%)	.	.	ENSG00000230876	ENSG00000164587	.	.	downstream	downstream	inconsistently_clipped(1)	.	.	.
LINC00486	RPLP0	+/.	-/.	2:32916556	12:120198605	intron	CDS	translocation	0	0	0	489	27	low	.	.	.	.	.	ENSG00000230876	ENSG00000089157	.	.	downstream	downstream	low_entropy	.	.	.
HLA-C	HLA-C	-/-	-/-	6:31271073	6:31270485	CDS/splice-site	CDS/splice-site	deletion/read-through	0	0	0	74	16	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%)\|Immunoglobulin_C1-set_domain(100%),MHC_I_C-terminus(100%)	.	.	ENSG00000204525	ENSG00000204525	.	.	upstream	downstream	read_through(2)	.	.	.
TACC3	AL592402.1(30830),AC096639.1(121319)	+/+	./-	4:1744723	1:213610097	CDS	intergenic	translocation	0	0	0	4	0	low	.	.	Transforming_acidic_coiled-coil-containing_protein_(TACC)__C-terminal(73%)\|	.	.	ENSG00000013810	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AC073592.4(23346),AC073593.1(63734)	HLA-DPA1	./-	-/-	12:124661790	6:33069885	intergenic	CDS/splice-site	translocation	0	0	0	0	50	low	.	.	\|Class_II_histocompatibility_antigen__alpha_domain(100%),Immunoglobulin_C1-set_domain(100%)	.	.	.	ENSG00000231389	.	.	upstream	downstream	mismatches(1)	.	.	.
FP236383.3	JAK3	+/+	-/-	21:8443313	19:17839630	intron	CDS	translocation	0	0	0	29	7	low	.	.	\|Protein_kinase_domain(100%)	.	.	ENSG00000280441	ENSG00000105639	.	.	downstream	downstream	multimappers(1)	.	.	.
TTF2	RNA5SP63(29255),AL355862.1(230489)	+/+	./+	1:117101562	1:163538850	3'UTR/splice-site	intergenic	deletion	0	0	0	33	0	low	.	.	GRF_zinc_finger(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%)\|	.	.	ENSG00000116830	.	.	.	downstream	upstream	mismatches(1)	.	.	.
TACC3	ARHGEF10	+/+	+/+	4:1744722	8:1836682	CDS	intron	translocation	0	0	0	4	0	low	.	.	Transforming_acidic_coiled-coil-containing_protein_(TACC)__C-terminal(73%)\|PH_domain(100%),RhoGEF_domain(100%),WD40_repeated_domain(100%)	.	.	ENSG00000013810	ENSG00000104728	.	.	downstream	upstream	mismatches(1)	.	.	.
RPL14	RPL14	+/+	+/+	3:40462052	3:40462044	CDS	CDS	duplication/ITD	0	0	0	60	53	low	.	.	Ribosomal_protein_L14(100%)\|	.	.	ENSG00000188846	ENSG00000188846	.	.	downstream	upstream	low_entropy(1),merge_adjacent	.	.	.
NCOA1	NCOA1	+/+	+/+	2:24742186	2:24739432	CDS/splice-site	CDS/splice-site	duplication/non-canonical_splicing	0	1	0	0	1	low	.	.	Helix-loop-helix_DNA-binding_domain(100%),Nuclear_receptor_coactivator(100%),Nuclear_receptor_coactivator__DUF1518(71%),PAS_domain(100%),PAS_fold(100%),Steroid_receptor_coactivator(100%),Unstructured_region_on_nuclear_receptor_coactivator_protein(100%)\|Nuclear_receptor_coactivator__DUF1518(100%)	.	.	ENSG00000084676	ENSG00000084676	.	.	downstream	upstream	min_support	.	.	.
LINC00486	DNAJC7	+/.	-/.	2:32916556	17:41988734	intron	CDS	translocation	0	0	0	489	0	low	.	.	.	.	.	ENSG00000230876	ENSG00000168259	.	.	downstream	downstream	low_entropy	.	.	.
FP236383.3	H2AC19	+/+	+/+	21:8394501	1:149851144	intron	CDS	translocation	0	0	0	8	72	low	.	.	\|C-terminus_of_histone_H2A(100%),Core_histone_H2A/H2B/H3/H4(92%)	.	.	ENSG00000280441	ENSG00000272196	.	.	downstream	upstream	multimappers(1)	.	.	.
RALY	EFTUD2	+/+	-/-	20:34077240	17:44865037	CDS	CDS	translocation	0	0	0	4	2	low	.	.	RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)\|Elongation_Factor_G__domain_III(100%),Elongation_factor_G_C-terminus(100%),Elongation_factor_G__domain_IV(100%),Elongation_factor_Tu_domain_2(100%)	.	.	ENSG00000125970	ENSG00000108883	.	.	downstream	downstream	mismatches(1)	.	.	.
HLA-C	AC007161.3	-/-	+/-	6:31271073	7:7783457	CDS/splice-site	intron	translocation/5'-5'	0	0	0	74	0	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%)\|	.	.	ENSG00000204525	ENSG00000283549	.	.	upstream	downstream	mismatches(1)	.	.	.
AP000821.2(19704),AP001893.3(12929)	DCPS	./+	+/+	11:126147785	11:126338335	intergenic	CDS	deletion/read-through	0	0	0	1	6	low	.	.	\|Scavenger_mRNA_decapping_enzyme_C-term_binding(85%)	.	.	.	ENSG00000110063	.	.	downstream	upstream	low_entropy(1)	.	.	.
AC011330.1	PPIP5K1	-/-	-/-	15:43672775	15:43573208	intron	exon	deletion/read-through	0	1	1	2	2	low	.	.	\|Histidine_phosphatase_superfamily_(branch_2)(17%)	.	.	ENSG00000249839	ENSG00000168781	.	.	upstream	downstream	no_coverage	.	.	.
5_8S_rRNA(2793),FP236383.3(120917)	PSME2	./+	-/-	21:8259726	14:24146806	intergenic	5'UTR	translocation	0	0	0	18	4	low	.	.	\|Proteasome_activator_pa28_alpha_subunit(100%),Proteasome_activator_pa28_beta_subunit(100%)	.	.	.	ENSG00000100911	.	.	downstream	downstream	mismatches(1)	.	.	.
MT-RNR2	FP671120.7	+/+	-/+	MT:2734	21:8254681	exon	exon	translocation/5'-5'	0	0	0	.	25	low	.	.	.	.	.	ENSG00000210082	ENSG00000281383	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
HLA-A	RNF25	+/+	-/+	6:29943541	2:218667579	CDS/splice-site	intron	translocation/5'-5'	0	0	0	8	0	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%)\|	.	.	ENSG00000206503	ENSG00000163481	.	.	downstream	upstream	mismatches(1)	.	.	.
AL671883.2	FP236383.4	+/+	-/-	6:31356896	21:8394316	exon	exon	translocation	0	0	0	21	18	low	.	.	.	.	.	ENSG00000271581	ENSG00000280614	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	PI4K2B	+/.	+/.	2:32916410	4:25234137	intron	5'UTR	translocation	0	0	0	50	14	low	.	.	.	.	.	ENSG00000230876	ENSG00000038210	.	.	downstream	upstream	mismatches	.	.	.
RABGGTB	LINC00486	+/.	+/.	1:75792280	2:32916555	CDS	intron	translocation	0	0	0	8	489	low	.	.	.	.	.	ENSG00000137955	ENSG00000230876	.	.	upstream	downstream	low_entropy	.	.	.
LINC00486	GLUD1	+/.	-/.	2:32916557	10:87068241	intron	intron	translocation	0	0	0	489	1	low	.	.	.	.	.	ENSG00000230876	ENSG00000148672	.	.	downstream	downstream	low_entropy	.	.	.
LINC00486	FP671120.4	+/.	+/.	2:32916559	21:8214088	intron	intron	translocation	0	0	0	489	13	low	.	.	.	.	.	ENSG00000230876	ENSG00000278996	.	.	downstream	upstream	mismatches	.	.	.
YBX3	FP671120.4	-/-	+/+	12:10722942	21:8217430	CDS	intron	translocation	1	0	0	3	63	low	.	.	.	.	.	ENSG00000060138	ENSG00000278996	.	.	upstream	upstream	min_support	.	.	.
MYO18A	FP671120.6	-/-	-/+	17:29094671	21:8211162	CDS	exon	translocation/5'-5'	1	0	0	8	17	low	.	.	Myosin_head_(motor_domain)(100%),Myosin_tail(75%),PDZ_domain(100%)\|	.	.	ENSG00000196535	ENSG00000280800	.	.	upstream	upstream	min_support	.	.	.
U2AF2	FP236383.4	+/+	-/+	19:55669485	21:8393769	CDS	exon	translocation/5'-5'	0	0	0	6	15	low	.	.	RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(70%)\|	.	.	ENSG00000063244	ENSG00000280614	.	.	downstream	upstream	multimappers(1)	.	.	.
FP236383.3	SYNE1	+/+	-/-	21:8399519	6:152234682	intron	CDS	translocation	0	0	0	13	4	low	.	.	\|Nuclear_envelope_localisation_domain(100%),Spectrin_repeat(75%)	.	.	ENSG00000280441	ENSG00000131018	.	.	downstream	downstream	multimappers(1)	.	.	.
FP236383.3	SYNE1	+/+	-/-	21:8443754	6:152234682	intron	CDS	translocation	0	0	0	11	4	low	.	.	\|Nuclear_envelope_localisation_domain(100%),Spectrin_repeat(75%)	.	.	ENSG00000280441	ENSG00000131018	.	.	downstream	downstream	multimappers(1)	.	.	.
FP671120.4	FP236383.3	+/+	+/+	21:8214650	21:8258878	intron	intergenic	deletion/read-through	0	1	0	84	281	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	duplicates(4),multimappers(1),non_coding_neighbors	.	.	.
PDE3A	PNPLA6	+/+	+/+	12:20551559	19:7551022	intron	CDS	translocation	0	1	0	13	2	low	.	.	\|Cyclic_nucleotide-binding_domain(7%),Patatin-like_phospholipase(100%)	.	.	ENSG00000172572	ENSG00000032444	.	.	downstream	upstream	min_support	.	.	.
ANKRD11	FP236383.3	-/-	+/+	16:89284492	21:8442983	CDS	intron	translocation	0	0	0	6	19	low	.	.	Ankyrin_repeat(100%),Ankyrin_repeats_(3_copies)(99%)\|	.	.	ENSG00000167522	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
MIB1	MIB1	+/+	+/+	18:21849391	18:21849251	intron	CDS	duplication	0	1	0	0	1	low	.	.	Ankyrin_repeats_(3_copies)(100%),Ankyrin_repeats_(many_copies)(100%),Mib_herc2(100%),Mind_bomb_SH3_repeat_domain(100%),Zinc_finger__C3HC4_type_(RING_finger)(33%),Zinc_finger__ZZ_type(100%)\|Zinc_finger__C3HC4_type_(RING_finger)(100%)	.	.	ENSG00000101752	ENSG00000101752	.	.	downstream	upstream	intragenic_exonic	.	.	.
EWSR1	ZGRF1	+/+	-/-	22:29291347	4:112619566	exon	CDS	translocation	0	1	0	0	1	low	.	.	\|AAA_domain(100%),GRF_zinc_finger(100%)	.	.	ENSG00000182944	ENSG00000138658	.	.	downstream	downstream	min_support	.	.	.
LINC00486	CANX	+/+	+/+	2:32916546	5:179705762	intron	CDS	translocation	0	0	0	489	1	low	.	.	\|Calreticulin_family(100%)	.	.	ENSG00000230876	ENSG00000127022	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
RNA5SP89(13362),AC092164.1(10066)	USP9X	./+	+/+	2:28697445	X:41229720	intergenic	CDS	translocation	0	1	0	0	1	low	.	.	\|Domain_of_unknown_function_(DUF3517)(4%)	.	.	.	ENSG00000124486	.	.	downstream	upstream	min_support	.	.	.
TTN	FP671120.4	-/-	+/+	2:178565235	21:8216848	CDS	intron	translocation	1	0	0	3	41	low	.	.	Fibronectin_type_III_domain(63%),Immunoglobulin_I-set_domain(82%),PPAK_motif(100%),Titin_Z(100%),Tri-helix_bundle_domain(100%)\|	.	.	ENSG00000155657	ENSG00000278996	.	.	upstream	upstream	min_support	.	.	.
LINC00486	DVL3	+/.	+/.	2:32916562	3:184165112	intron	exon	translocation	0	0	0	480	5	low	.	.	.	.	.	ENSG00000230876	ENSG00000161202	.	.	downstream	upstream	mismatches	.	.	.
WDR45	ACTG1	-/+	-/-	X:49074934	17:81511408	exon	CDS	translocation/3'-3'	0	1	0	0	29	low	.	.	\|Actin(48%)	.	.	ENSG00000196998	ENSG00000184009	.	.	downstream	downstream	min_support	.	.	.
PRDM1	FP671120.6	+/+	-/+	6:106107314	21:8210623	CDS	exon	translocation/5'-5'	1	0	0	4	30	low	.	.	C2H2-type_zinc_finger(100%),SET_domain(100%),Zinc_finger__C2H2_type(100%)\|	.	.	ENSG00000057657	ENSG00000280800	.	.	downstream	upstream	min_support	.	.	.
UQCRH	LINC00486	+/.	+/.	1:46316626	2:32916556	3'UTR	intron	translocation	0	0	0	10	489	low	.	.	.	.	.	ENSG00000173660	ENSG00000230876	.	.	upstream	downstream	low_entropy	.	.	.
SLC25A6	FP671120.4	-/-	+/+	X:1387290	21:8216660	CDS	intron	translocation	1	0	0	45	20	low	.	.	Mitochondrial_carrier_protein(80%)\|	.	.	ENSG00000169100	ENSG00000278996	.	.	upstream	upstream	min_support	.	.	.
GBA2	UBBP5(130428),LIN28AP2(29775)	-/+	./-	9:35739118	13:87349697	intron	intergenic	translocation	1	0	0	2	0	low	.	.	.	.	.	ENSG00000070610	.	.	.	downstream	downstream	min_support	.	.	.
HSP90AB1	P2RY8	+/+	-/-	6:44252244	X:1473357	CDS	intron	translocation	1	0	0	12	0	low	.	.	Histidine_kinase-__DNA_gyrase_B-__and_HSP90-like_ATPase(100%),Hsp90_protein(74%)\|7_transmembrane_receptor_(rhodopsin_family)(100%)	.	.	ENSG00000096384	ENSG00000182162	.	.	downstream	downstream	min_support	.	.	.
CD74	FP236383.3	-/-	+/+	5:150407192	21:8392677	CDS	intron	translocation	0	0	0	53	8	low	.	.	CLIP__MHC2_interacting(62%)\|	.	.	ENSG00000019582	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
PRKDC	5_8S_rRNA(1514),FP236383.3(122196)	-/-	./+	8:47879521	21:8258447	CDS	intergenic	translocation	0	0	0	5	16	low	.	.	.	.	.	ENSG00000253729	.	.	.	upstream	upstream	multimappers(1)	.	.	.
FP236383.4	COA4	-/+	-/-	21:8393547	11:73873290	exon	CDS	translocation/3'-3'	0	0	0	24	6	low	.	.	.	.	.	ENSG00000280614	ENSG00000181924	.	.	downstream	downstream	mismatches(1)	.	.	.
RABGGTB	LINC00486	+/.	+/.	1:75792280	2:32916556	CDS	intron	translocation	0	0	0	8	489	low	.	.	.	.	.	ENSG00000137955	ENSG00000230876	.	.	upstream	downstream	low_entropy	.	.	.
PRKDC	FP236383.3	-/-	+/+	8:47879521	21:8397264	CDS	intron	translocation	0	0	0	5	19	low	.	.	.	.	.	ENSG00000253729	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
LINC00486	RRP1B	+/+	+/+	2:32916445	21:43675042	intron	CDS	translocation	0	0	0	219	0	low	.	.	\|Nucleolar_protein_Nop52(36%)	.	.	ENSG00000230876	ENSG00000160208	.	.	downstream	upstream	low_entropy(1)	.	.	.
FP236383.3	ZNF704	+/+	-/-	21:8444649	8:80874336	intron	intron	translocation	0	0	0	59	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000164684	.	.	downstream	downstream	mismatches(1)	.	.	.
MT-RNR2	FP236383.5	+/+	-/+	MT:2734	21:8437718	exon	exon	translocation/5'-5'	0	0	0	.	23	low	.	.	.	.	.	ENSG00000210082	ENSG00000281181	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
LINC00486	CDYL	+/.	+/.	2:32916555	6:4952329	intron	CDS	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000153046	.	.	downstream	upstream	low_entropy	.	.	.
RN7SKP190(234603),AC009117.1(7435)	CCT7	./+	+/+	16:82427393	2:73244033	intergenic	CDS	translocation	0	0	0	0	0	low	.	.	\|TCP-1/cpn60_chaperonin_family(77%)	.	.	.	ENSG00000135624	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.6	SLC25A6	-/+	-/-	21:8210673	X:1389686	exon	CDS	translocation/3'-3'	0	1	0	30	37	low	.	.	\|Mitochondrial_carrier_protein(83%)	.	.	ENSG00000280800	ENSG00000169100	.	.	downstream	downstream	min_support	.	.	.
PRKDC	FP671120.4	-/-	+/+	8:47862085	21:8215350	CDS	intron	translocation	1	0	0	3	7	low	.	.	DNA-dependent_protein_kinase_catalytic_subunit__CC3(44%)\|	.	.	ENSG00000253729	ENSG00000278996	.	.	upstream	upstream	min_support	.	.	.
FP236383.3	FP671120.4	+/+	+/+	21:8446083	21:8214346	intron	intron	duplication	1	0	0	39	5	low	.	.	.	.	.	ENSG00000280441	ENSG00000278996	.	.	downstream	upstream	min_support	.	.	.
LINC00486	PPP1R12C	+/.	-/.	2:32916555	19:55096140	intron	CDS	translocation	0	0	0	489	3	low	.	.	.	.	.	ENSG00000230876	ENSG00000125503	.	.	downstream	downstream	low_entropy	.	.	.
FP236383.5	CENPF	-/+	+/+	21:8437781	1:214630618	exon	CDS	translocation/3'-3'	0	0	0	29	6	low	.	.	\|Leucine-rich_repeats_of_kinetochore_protein_Cenp-F/LEK1(100%),Rb-binding_domain_of_kinetochore_protein_Cenp-F/LEK1(100%)	.	.	ENSG00000281181	ENSG00000117724	.	.	downstream	upstream	multimappers(1)	.	.	.
5_8S_rRNA(2005),FP236383.3(121705)	FP236383.3	./-	+/+	21:8258938	21:8400885	intergenic	intron	inversion	0	0	0	466	31	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	low_entropy(1)	.	.	.
RPL14	AC245389.1	+/+	+/-	3:40462078	1:148795913	CDS	exon	translocation/5'-5'	0	0	0	66	0	low	.	.	Ribosomal_protein_L14(100%)\|	.	.	ENSG00000188846	ENSG00000271546	.	.	downstream	downstream	homopolymer(1)	.	.	.
NPIPB12	LINC00486	-/-	+/-	16:29487093	2:32916556	CDS	intron	translocation/5'-5'	0	0	0	4	489	low	.	.	Nuclear_pore_complex_interacting_protein_(NPIP)(66%)\|	.	.	ENSG00000169203	ENSG00000230876	.	.	upstream	downstream	low_entropy	.	.	.
SLC43A1	SLC43A1	-/-	-/-	11:57491224	11:57491853	CDS	CDS	duplication	0	0	1	1	1	low	.	.	Major_Facilitator_Superfamily(77%)\|Major_Facilitator_Superfamily(47%)	.	.	ENSG00000149150	ENSG00000149150	.	.	upstream	downstream	min_support	.	.	.
PTMA	PTMA	+/+	+/+	2:231711941	2:231711382	CDS	CDS	duplication	0	1	0	28	23	low	.	.	Prothymosin/parathymosin_family(53%)\|Prothymosin/parathymosin_family(74%)	.	.	ENSG00000187514	ENSG00000187514	.	.	downstream	upstream	intragenic_exonic	.	.	.
FAM126A	FAM126A	-/-	-/-	7:22945580	7:22946034	3'UTR	CDS	duplication	1	0	0	1	0	low	.	.	Hyccin(100%)\|	.	.	ENSG00000122591	ENSG00000122591	.	.	upstream	downstream	intragenic_exonic	.	.	.
TMEM63B	MEF2B	+/+	-/-	6:44147454	19:19147707	CDS	CDS	translocation	0	1	0	1	5	low	.	.	Cytosolic_domain_of_10TM_putative_phosphate_transporter(40%),Late_exocytosis__associated_with_Golgi_transport_(100%)\|	.	.	ENSG00000137216	ENSG00000213999	.	.	downstream	downstream	min_support	.	.	.
AC233976.1	ZC3H15	-/+	+/+	X:51333789	2:186505291	intron	exon	translocation/3'-3'	0	0	0	0	1	low	.	.	\|DRG_Family_Regulatory_Proteins__Tma46(87%)	.	.	ENSG00000229151	ENSG00000065548	.	.	downstream	upstream	mismatches(1)	.	.	.
ANKRD11	FP671120.4	-/-	+/+	16:89284492	21:8215720	CDS	intron	translocation	1	0	0	6	24	low	.	.	Ankyrin_repeat(100%),Ankyrin_repeats_(3_copies)(99%)\|	.	.	ENSG00000167522	ENSG00000278996	.	.	upstream	upstream	min_support	.	.	.
RPL14	Y_RNA(51090),AC093813.1(26234)	+/+	./+	3:40462078	7:156237313	CDS	intergenic	translocation	0	0	0	66	0	low	.	.	Ribosomal_protein_L14(100%)\|	.	.	ENSG00000188846	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
SRI	SRI	-/-	-/-	7:88210094	7:88210076	CDS	CDS	deletion/read-through	0	0	0	4	3	low	.	.	EF-hand_domain_pair(30%)\|EF-hand_domain_pair(66%)	.	.	ENSG00000075142	ENSG00000075142	.	.	upstream	downstream	read_through(1)	.	.	.
LINC00486	RAI1	+/.	+/.	2:32916555	17:17797484	intron	CDS	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000108557	.	.	downstream	upstream	low_entropy	.	.	.
AC026444.1(35629),COX7C(179339)	CCT7	./-	+/+	5:86438589	2:73244033	intergenic	CDS	translocation	0	0	0	0	0	low	.	.	\|TCP-1/cpn60_chaperonin_family(77%)	.	.	.	ENSG00000135624	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	AL445253.1	+/+	+/+	21:8400415	1:22143140	intron	intron	translocation	0	0	0	105	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000285873	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	5_8S_rRNA(2048),FP236383.3(121662)	+/-	./-	21:8442014	21:8258981	intron	intergenic	deletion/read-through	0	0	0	580	511	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
HLA-C	RNA5-8SN3	-/-	+/+	6:31271232	21:8395685	CDS	exon	translocation	0	0	0	36	4	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(72%)\|	.	.	ENSG00000204525	ENSG00000275215	.	.	upstream	upstream	mismatches	.	.	.
LINC00486	LGALS9	+/.	+/.	2:32916555	17:27640697	intron	CDS	translocation	0	0	0	489	5	low	.	.	.	.	.	ENSG00000230876	ENSG00000168961	.	.	downstream	upstream	low_entropy	.	.	.
PSME2	FP236383.3	-/-	+/-	14:24144400	21:8442289	CDS/splice-site	intron	translocation/5'-5'	1	0	0	1	65	low	.	.	Proteasome_activator_pa28_alpha_subunit(100%),Proteasome_activator_pa28_beta_subunit(35%)\|	.	.	ENSG00000100911	ENSG00000280441	.	.	upstream	downstream	in_vitro	.	.	.
HSP90AB1	HSP90AB1	+/+	+/+	6:44250528	6:44250424	CDS	CDS	duplication	0	0	0	13	6	low	.	.	Histidine_kinase-__DNA_gyrase_B-__and_HSP90-like_ATPase(100%),Hsp90_protein(20%)\|Hsp90_protein(86%)	.	.	ENSG00000096384	ENSG00000096384	.	.	downstream	upstream	hairpin(1)	.	.	.
HNRNPR	FP671120.4	-/-	+/+	1:23323561	21:8215580	CDS	intron	translocation	1	0	0	7	27	low	.	.	Heterogeneous_nuclear_ribonucleoprotein_Q_acidic_domain(100%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(29%)\|	.	.	ENSG00000125944	ENSG00000278996	.	.	upstream	upstream	min_support	.	.	.
LINC00486	ACADVL	+/.	+/.	2:32916557	17:7220032	intron	CDS	translocation	0	0	0	489	0	low	.	.	.	.	.	ENSG00000230876	ENSG00000072778	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	GOLPH3L	+/+	-/-	2:32916370	1:150694708	intron	CDS	translocation	0	0	0	50	6	low	.	.	\|Golgi_phosphoprotein_3_(GPP34)(100%)	.	.	ENSG00000230876	ENSG00000143457	.	.	downstream	downstream	inconsistently_clipped(1)	.	.	.
ANKHD1-EIF4EBP3	ANKHD1-EIF4EBP3	+/+	+/+	5:140524178	5:140524120	CDS	CDS	duplication/ITD	0	0	0	2	2	low	.	.	Ankyrin_repeats_(3_copies)(100%)\|KH_domain(100%)	.	.	ENSG00000254996	ENSG00000254996	.	.	downstream	upstream	hairpin(1)	.	.	.
UNC13A	HLA-B	-/-	-/-	19:17605948	6:31356470	3'UTR	exon	translocation	0	0	0	0	4	low	.	.	C2_domain(100%),MUN_domain(100%),NA(100%),Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)(100%)\|Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(49%),Immunoglobulin_C1-set_domain(100%),MHC_I_C-terminus(100%)	.	.	ENSG00000130477	ENSG00000234745	.	.	upstream	downstream	homopolymer(2)	.	.	.
IGKV1OR2-118(9611),AC233263.1(34362)	FP671120.4	./-	+/-	2:90325447	21:8217364	intergenic	intron	translocation	0	0	0	1	83	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	VWA8	+/.	-/.	2:32916412	13:41778053	intron	CDS	translocation	0	0	0	50	14	low	.	.	.	.	.	ENSG00000230876	ENSG00000102763	.	.	downstream	downstream	mismatches	.	.	.
AC009779.3	AC009779.3	+/+	+/+	12:55719196	12:55719134	CDS	CDS	duplication/ITD	0	0	0	2	1	low	.	.	GCN5-like_protein_1_(GCN5L1)(88%)\|GCN5-like_protein_1_(GCN5L1)(36%)	.	.	ENSG00000258311	ENSG00000258311	.	.	downstream	upstream	duplicates(1),hairpin(1)	.	.	.
LINC00486	HSP90AB1	+/+	+/+	2:32916336	6:44253525	intron	CDS	translocation	0	1	0	332	12	low	.	.	\|Hsp90_protein(0%)	.	.	ENSG00000230876	ENSG00000096384	.	.	downstream	upstream	min_support	.	.	.
DHX29	DHX29	-/-	-/-	5:55283498	5:55283479	CDS	CDS	deletion/read-through	0	0	0	1	0	low	.	.	\|DEAD/DEAH_box_helicase(100%),Helicase_associated_domain_(HA2)(100%),Helicase_conserved_C-terminal_domain(100%),Oligonucleotide/oligosaccharide-binding_(OB)-fold(100%)	.	.	ENSG00000067248	ENSG00000067248	.	.	upstream	downstream	read_through(1)	.	.	.
ACTG1	AMY2B	-/-	+/+	17:81512006	1:103569741	CDS	exon	translocation	0	0	0	53	0	low	.	.	Actin(22%)\|Alpha_amylase__C-terminal_all-beta_domain(100%),Alpha_amylase__catalytic_domain(100%)	.	.	ENSG00000184009	ENSG00000240038	.	.	upstream	upstream	mismatches(1)	.	.	.
KAT6B	KAT6B	+/+	+/+	10:75028944	10:75028870	CDS	CDS	duplication/ITD	0	0	0	1	1	low	.	.	MOZ/SAS_family(100%),MYST_family_zinc_finger_domain(100%),PHD-finger(100%),linker_histone_H1_and_H5_family(100%)\|	.	.	ENSG00000156650	ENSG00000156650	.	.	downstream	upstream	low_entropy(1)	.	.	.
HLA-B	HLA-G	-/-	+/+	6:31356228	6:29828758	CDS	CDS	inversion	0	0	0	49	0	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(90%)\|Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(10%),Immunoglobulin_C1-set_domain(100%)	.	.	ENSG00000234745	ENSG00000204632	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	SCFD1	+/-	+/+	21:8443212	14:30670299	intron	CDS	translocation/3'-3'	0	0	0	19	4	low	.	.	\|Sec1_family(56%)	.	.	ENSG00000280441	ENSG00000092108	.	.	upstream	upstream	multimappers(1)	.	.	.
NAT9	FP236383.3	-/-	+/+	17:74773639	21:8443183	CDS	intron	translocation	0	0	1	2	18	low	.	.	Acetyltransferase_(GNAT)_domain(17%)\|	.	.	ENSG00000109065	ENSG00000280441	.	.	upstream	upstream	min_support	.	.	.
UQCRH	LINC00486	+/.	+/.	1:46316626	2:32916553	3'UTR	intron	translocation	0	0	0	10	489	low	.	.	.	.	.	ENSG00000173660	ENSG00000230876	.	.	upstream	downstream	low_entropy	.	.	.
CDC20	5_8S_rRNA(3071),FP236383.3(120639)	+/+	./+	1:43360087	21:8260004	CDS	intergenic	translocation	0	0	0	7	22	low	.	.	.	.	.	ENSG00000117399	.	.	.	downstream	upstream	mismatches(1)	.	.	.
5_8S_rRNA(2912),FP236383.3(120798)	LSP1	./+	+/+	21:8259845	11:1883524	intergenic	CDS	translocation	0	0	0	16	8	low	.	.	\|Caldesmon(100%)	.	.	.	ENSG00000130592	.	.	downstream	upstream	multimappers(1)	.	.	.
AC253536.1(37),GSTT4(6943)	FP671120.4	./+	+/+	22:23991458	21:8216034	intergenic	intron	translocation	0	0	0	0	47	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
ANKHD1-EIF4EBP3	ANKHD1	+/+	+/+	5:140524178	5:140524102	CDS	CDS	duplication	0	0	0	2	2	low	.	.	Ankyrin_repeats_(3_copies)(100%)\|KH_domain(100%)	.	.	ENSG00000254996	ENSG00000131503	.	.	downstream	upstream	low_entropy(1)	.	.	.
ANKRD44	FP236383.3	-/+	+/+	2:197282855	21:8445983	intron	intron	translocation/3'-3'	0	0	0	0	42	low	.	.	.	.	.	ENSG00000065413	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	HMGB1P5	+/+	+/+	21:8398360	3:22382114	intron	exon	translocation	0	0	0	12	6	low	.	.	.	.	.	ENSG00000280441	ENSG00000132967	.	.	downstream	upstream	multimappers(1)	.	.	.
STMN1(780),PAFAH2(51996)	IGLC7	./+	+/+	1:25907771	22:22904988	intergenic	intergenic	translocation	0	0	0	0	13	low	.	.	.	.	.	.	ENSG00000211685	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	METTL16	+/.	-/.	2:32916555	17:2420233	intron	CDS	translocation	0	0	0	489	5	low	.	.	.	.	.	ENSG00000230876	ENSG00000127804	.	.	downstream	downstream	low_entropy	.	.	.
RPS13	5_8S_rRNA(1367),FP236383.3(122343)	-/-	./+	11:17075576	21:8258300	CDS	intergenic	translocation	0	0	0	28	13	low	.	.	Ribosomal_S13/S15_N-terminal_domain(100%)\|	.	.	ENSG00000110700	.	.	.	upstream	upstream	multimappers(1)	.	.	.
AC134879.2(61280),RCC2P1(245535)	CCT7	./+	+/+	Y:11535517	2:73244033	intergenic	CDS	translocation	0	0	0	0	0	low	.	.	\|TCP-1/cpn60_chaperonin_family(77%)	.	.	.	ENSG00000135624	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	5_8S_rRNA(2077),FP236383.3(121633)	+/+	./+	21:8215191	21:8259010	intron	intergenic	deletion/read-through	0	0	0	11	491	low	.	.	.	.	.	ENSG00000278996	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
FP236383.3	PSME2	+/+	-/-	21:8398531	14:24146806	intron	5'UTR	translocation	0	0	0	17	4	low	.	.	\|Proteasome_activator_pa28_alpha_subunit(100%),Proteasome_activator_pa28_beta_subunit(100%)	.	.	ENSG00000280441	ENSG00000100911	.	.	downstream	downstream	mismatches(1)	.	.	.
ANKRD11	ANKRD11	-/-	-/-	16:89282765	16:89282917	CDS	CDS	duplication	0	0	0	2	3	low	.	.	Ankyrin_repeat(100%),Ankyrin_repeats_(3_copies)(99%)\|Ankyrin_repeats_(3_copies)(0%)	.	.	ENSG00000167522	ENSG00000167522	.	.	upstream	downstream	hairpin(1)	.	.	.
XPC	FP236383.3	-/-	+/-	3:14158337	21:8443410	CDS	intron	translocation/5'-5'	0	0	0	5	61	low	.	.	Rad4_transglutaminase-like_domain(12%)\|	.	.	ENSG00000154767	ENSG00000280441	.	.	upstream	downstream	multimappers(1)	.	.	.
FP671120.4	FP236383.3	+/+	+/+	21:8217209	21:8400242	intron	intron	deletion/read-through	0	0	0	17	15	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
RPS4Y1	5_8S_rRNA(3005),FP236383.3(120705)	+/+	./+	Y:2844169	21:8259938	CDS	intergenic	translocation	0	0	0	4	23	low	.	.	RS4NT_(NUC023)_domain(100%)\|	.	.	ENSG00000129824	.	.	.	downstream	upstream	multimappers(1)	.	.	.
AC011603.2	FP236383.3	+/-	+/+	12:49128112	21:8397311	exon	intron	translocation/3'-3'	0	0	0	21	19	low	.	.	.	.	.	ENSG00000258017	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
LINC00486	POLD4	+/.	-/.	2:32916556	11:67352771	intron	CDS	translocation	0	0	0	489	5	low	.	.	.	.	.	ENSG00000230876	ENSG00000175482	.	.	downstream	downstream	low_entropy	.	.	.
FP236383.3	FP671120.4	+/+	+/+	21:8400415	21:8217372	intron	intron	duplication	1	1	0	105	59	low	.	.	.	.	.	ENSG00000280441	ENSG00000278996	.	.	downstream	upstream	mismatches(1),relative_support	.	.	.
FP671120.4	BIN3	+/-	-/-	21:8214795	8:22621502	intron	CDS	translocation/3'-3'	0	1	0	171	5	low	.	.	.	.	.	ENSG00000278996	ENSG00000147439	.	.	upstream	downstream	min_support	.	.	.
ANKHD1-EIF4EBP3	ANKHD1-EIF4EBP3	+/+	+/+	5:140524178	5:140524102	CDS	CDS	duplication/ITD	0	0	0	2	2	low	.	.	Ankyrin_repeats_(3_copies)(100%)\|KH_domain(100%)	.	.	ENSG00000254996	ENSG00000254996	.	.	downstream	upstream	low_entropy(1)	.	.	.
FP671120.7	FP236383.3	-/+	+/+	21:8254982	21:8397590	exon	intron	deletion/read-through/3'-3'	0	0	0	17	11	low	.	.	.	.	.	ENSG00000281383	ENSG00000280441	.	.	downstream	upstream	multimappers(1)	.	.	.
HLA-DRB1	HLA-DRB5	-/-	-/-	6:32554740	6:32519419	intergenic	CDS	deletion/read-through	4	0	0	5	6	low	.	.	Class_II_histocompatibility_antigen__beta_domain(100%),Immunoglobulin_C1-set_domain(100%)\|Immunoglobulin_C1-set_domain(9%)	.	.	ENSG00000196126	ENSG00000198502	.	.	upstream	downstream	blacklist,mismatches(1)	.	.	.
LINC00486	DONSON	+/.	-/.	2:32916555	21:33588430	intron	CDS	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000159147	.	.	downstream	downstream	low_entropy	.	.	.
LINC00486	PI4K2B	+/.	+/.	2:32916414	4:25234137	intron	5'UTR	translocation	0	0	0	50	14	low	.	.	.	.	.	ENSG00000230876	ENSG00000038210	.	.	downstream	upstream	mismatches	.	.	.
AF241726.1	FP236383.3	+/+	+/-	X:38561534	21:8444634	intron	intron	translocation/5'-5'	0	0	0	0	46	low	.	.	Vitamin_K-dependent_carboxylation/gamma-carboxyglutamic_(GLA)_domain(100%)\|	.	.	ENSG00000250349	ENSG00000280441	.	.	downstream	downstream	inconsistently_clipped(1)	.	.	.
NCOR2	ADGRG2(129889),PDHA1(91367)	-/.	./.	12:124433913	X:19252526	intron	intergenic	translocation	0	0	0	1	1	low	.	.	.	.	.	ENSG00000196498	.	.	.	downstream	upstream	mismatches	.	.	.
NPIPB2	LINC00486	-/-	+/-	16:11929139	2:32916555	CDS	intron	translocation/5'-5'	0	0	0	5	489	low	.	.	Nuclear_pore_complex_interacting_protein_(NPIP)(71%)\|	.	.	ENSG00000234719	ENSG00000230876	.	.	upstream	downstream	low_entropy	.	.	.
MYO18A	FP236383.4	-/-	-/+	17:29094671	21:8394197	CDS	exon	translocation/5'-5'	0	0	0	8	20	low	.	.	Myosin_head_(motor_domain)(100%),Myosin_tail(75%),PDZ_domain(100%)\|	.	.	ENSG00000196535	ENSG00000280614	.	.	upstream	upstream	multimappers(1)	.	.	.
ZNF713	FP236383.3	+/-	+/-	7:55887600	21:8400399	5'UTR	intron	translocation	0	0	0	1	37	low	.	.	.	.	.	ENSG00000178665	ENSG00000280441	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	BCL2	+/.	-/.	2:32916555	18:63318239	intron	CDS	translocation	0	0	0	489	3	low	.	.	.	.	.	ENSG00000230876	ENSG00000171791	.	.	downstream	downstream	low_entropy	.	.	.
HLA-A	B3GAT1	+/+	-/+	6:29943541	11:134405262	CDS/splice-site	intron	translocation/5'-5'	0	0	0	8	0	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%)\|	.	.	ENSG00000206503	ENSG00000109956	.	.	downstream	upstream	mismatches(1)	.	.	.
NPIPA3	NPIPA2	+/+	+/+	16:14719872	16:14759297	CDS	CDS	deletion/read-through	0	0	1	3	3	low	.	.	Nuclear_pore_complex_interacting_protein_(NPIP)(17%)\|Nuclear_pore_complex_interacting_protein_(NPIP)(67%)	.	.	ENSG00000224712	ENSG00000254852	.	.	downstream	upstream	min_support	.	.	.
RRP1	RRP1	+/+	+/+	21:43803690	21:43802307	CDS	CDS	duplication	1	0	0	3	2	low	.	.	Nucleolar_protein_Nop52(100%)\|	.	.	ENSG00000160214	ENSG00000160214	.	.	downstream	upstream	intragenic_exonic	.	.	.
RPS13	FP671120.4	-/-	+/+	11:17075576	21:8214079	CDS	intron	translocation	0	0	0	28	12	low	.	.	Ribosomal_S13/S15_N-terminal_domain(100%)\|	.	.	ENSG00000110700	ENSG00000278996	.	.	upstream	upstream	multimappers(1)	.	.	.
RPS13	FP236383.3	-/-	+/+	11:17075576	21:8397117	CDS	intron	translocation	0	0	1	28	14	low	.	.	Ribosomal_S13/S15_N-terminal_domain(100%)\|	.	.	ENSG00000110700	ENSG00000280441	.	.	upstream	upstream	min_support,multimappers(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916556	21:8441979	intron	intron	translocation	0	0	0	489	567	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	downstream	upstream	low_entropy	.	.	.
AC105052.3	POLR2J3	-/-	-/-	7:102637576	7:102538474	3'UTR	3'UTR	deletion/read-through	0	0	1	3	3	low	.	.	.	.	.	ENSG00000267645	ENSG00000168255	.	.	upstream	downstream	min_support	.	.	.
HLA-C	RPS26P39(67155),AL160290.2(84392)	-/-	./-	6:31271075	10:123239030	CDS/splice-site	intergenic	translocation	0	0	0	74	0	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%)\|	.	.	ENSG00000204525	.	.	.	upstream	downstream	mismatches(1)	.	.	.
LORICRIN	LORICRIN	+/+	+/+	1:153261534	1:153261523	CDS	CDS	duplication/ITD	0	0	0	0	1	low	.	.	Major_keratinocyte_cell_envelope_protein(62%)\|Major_keratinocyte_cell_envelope_protein(38%)	.	.	ENSG00000203782	ENSG00000203782	.	.	downstream	upstream	low_entropy(2)	.	.	.
LINC00486	NUDT4	+/.	+/.	2:32916555	12:93378583	intron	5'UTR	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000173598	.	.	downstream	upstream	low_entropy	.	.	.
PDS5B	PDS5B	+/+	+/+	13:32735330	13:32732101	CDS/splice-site	CDS/splice-site	duplication/non-canonical_splicing	1	0	0	1	1	low	.	.	.	.	.	ENSG00000083642	ENSG00000083642	.	.	downstream	upstream	min_support	.	.	.
UBP1	UBP1	-/-	-/-	3:33400189	3:33425741	CDS/splice-site	CDS/splice-site	duplication/non-canonical_splicing	0	1	0	0	2	low	.	.	CP2_transcription_factor(100%),SAM_domain_(Sterile_alpha_motif)(52%)\|CP2_transcription_factor(100%),SAM_domain_(Sterile_alpha_motif)(100%)	.	.	ENSG00000153560	ENSG00000153560	.	.	upstream	downstream	min_support	.	.	.
AP3S1	FP236383.3	+/+	+/+	5:115913909	21:8444131	3'UTR	intron	translocation	0	0	0	3	20	low	.	.	Clathrin_adaptor_complex_small_chain(100%)\|	.	.	ENSG00000177879	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
PDE3B	FP671120.4	+/+	+/+	11:14645021	21:8209831	CDS	intron	translocation	1	0	0	5	21	low	.	.	.	.	.	ENSG00000152270	ENSG00000278996	.	.	downstream	upstream	min_support	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916555	21:8401739	intron	intron	translocation	0	0	0	489	31	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	downstream	upstream	low_entropy	.	.	.
FP236383.3	HDGF	+/+	-/-	21:8442691	1:156743873	intron	CDS	translocation	0	0	0	8	4	low	.	.	.	.	.	ENSG00000280441	ENSG00000143321	.	.	downstream	downstream	multimappers(1)	.	.	.
FP671120.6	FP236383.3	-/+	+/+	21:8210774	21:8441810	exon	intron	deletion/read-through/3'-3'	0	0	0	14	35	low	.	.	.	.	.	ENSG00000280800	ENSG00000280441	.	.	downstream	upstream	multimappers(1)	.	.	.
ATP5F1A	CNOT1	-/-	-/-	18:46087195	16:58578735	CDS	CDS	translocation	1	0	0	9	4	low	.	.	ATP_synthase_alpha/beta_family__beta-barrel_domain(100%),ATP_synthase_alpha/beta_family__nucleotide-binding_domain(61%)\|CCR4-NOT_transcription_complex_subunit_1_CAF1-binding_domain(100%),CCR4-NOT_transcription_complex_subunit_1_HEAT_repeat(89%),CCR4-NOT_transcription_complex_subunit_1_TTP_binding_domain(100%),CCR4-Not_complex__Not1_subunit__domain_of_unknown_function_DUF3819(100%),CCR4-Not_complex_component__Not1(100%)	.	.	ENSG00000152234	ENSG00000125107	.	.	upstream	downstream	min_support	.	.	.
FP671120.4	FP236383.3	+/+	+/+	21:8216051	21:8399083	intron	intron	deletion/read-through	0	0	0	72	77	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	low_entropy(1)	.	.	.
HLA-C	AC093843.1(301605),AC011233.1(5293)	-/-	./-	6:31271073	2:221157478	CDS/splice-site	intergenic	translocation	0	0	0	74	0	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%)\|	.	.	ENSG00000204525	.	.	.	upstream	downstream	mismatches(1)	.	.	.
HLA-DRB6	HLA-DRB5	-/-	-/-	6:32554961	6:32519640	exon	CDS	deletion/read-through	0	0	0	0	5	low	.	.	\|Immunoglobulin_C1-set_domain(100%)	.	.	ENSG00000229391	ENSG00000198502	.	.	upstream	downstream	mismatches(1)	.	.	.
HLA-DRB6	HLA-DRB5	-/-	-/-	6:32554740	6:32519419	exon	CDS	deletion/read-through	4	0	0	5	6	low	.	.	\|Immunoglobulin_C1-set_domain(9%)	.	.	ENSG00000229391	ENSG00000198502	.	.	upstream	downstream	blacklist,mismatches(1)	.	.	.
LINC00486	PRKRIP1	+/.	+/.	2:32916580	7:102396444	intron	CDS	translocation	0	0	0	480	8	low	.	.	.	.	.	ENSG00000230876	ENSG00000128563	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	RARA	+/.	+/.	2:32916556	17:40331258	intron	CDS	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000131759	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	5_8S_rRNA(2014),FP236383.3(121696)	+/.	./.	2:32916556	21:8258947	intron	intergenic	translocation	0	0	0	489	511	low	.	.	.	.	.	ENSG00000230876	.	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	CDYL	+/.	+/.	2:32916556	6:4952329	intron	CDS	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000153046	.	.	downstream	upstream	low_entropy	.	.	.
AC105052.3	POLR2J3	-/-	-/-	7:102667156	7:102567030	CDS	CDS	deletion/read-through	0	0	1	5	3	low	.	.	.	.	.	ENSG00000267645	ENSG00000168255	.	.	upstream	downstream	min_support	.	.	.
5_8S_rRNA(3245),FP236383.3(120465)	SCFD1	./-	+/+	21:8260178	14:30670299	intergenic	CDS	translocation	0	0	0	29	4	low	.	.	\|Sec1_family(56%)	.	.	.	ENSG00000092108	.	.	upstream	upstream	multimappers(1)	.	.	.
FP671120.4	FP236383.3	+/+	+/+	21:8259420	21:8397815	intergenic	intron	deletion/read-through	0	0	0	10	119	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	duplicates(1)	.	.	.
CR392039.1(1161),CR392039.3(7905)	RPL4	./+	-/-	21:8988591	15:66503368	intergenic	CDS	translocation	0	0	0	7	35	low	.	.	\|60S_ribosomal_protein_L4_C-terminal_domain(100%),Ribosomal_protein_L4/L1_family(86%)	.	.	.	ENSG00000174444	.	.	downstream	downstream	multimappers(1)	.	.	.
ACTG1	AL590396.1	-/-	+/+	17:81512006	1:237927020	CDS	exon	translocation	0	0	0	53	0	low	.	.	Actin(22%)\|	.	.	ENSG00000184009	ENSG00000243781	.	.	upstream	upstream	mismatches(1)	.	.	.
5_8S_rRNA(1572),FP236383.3(122138)	RPL19	./+	+/+	21:8258505	17:39200337	intergenic	5'UTR	translocation	0	0	0	15	0	low	.	.	\|Ribosomal_protein_L19e(100%)	.	.	.	ENSG00000108298	.	.	downstream	upstream	multimappers(1)	.	.	.
FP671120.4	FP236383.3	+/+	+/+	21:8216036	21:8260263	intron	intergenic	deletion/read-through	0	1	0	46	57	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	duplicates(6),non_coding_neighbors	.	.	.
AL109936.1	RPL29	+/+	-/-	1:23245142	3:51993855	exon	CDS	translocation	0	1	0	0	40	low	.	.	.	.	.	ENSG00000215381	ENSG00000162244	.	.	downstream	downstream	min_support	.	.	.
CDC20	FP236383.3	+/+	+/+	1:43360087	21:8443038	CDS	intron	translocation	0	0	0	7	21	low	.	.	.	.	.	ENSG00000117399	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	TNPO3	+/.	-/.	2:32916556	7:128974976	intron	intron	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000064419	.	.	downstream	downstream	low_entropy	.	.	.
FP671120.4	RHOA	+/+	-/-	21:8214235	3:49411872	intron	5'UTR	translocation	0	1	0	28	7	low	.	.	\|Ras_family(100%)	.	.	ENSG00000278996	ENSG00000067560	.	.	downstream	downstream	min_support	.	.	.
PRDM12	FP236383.3	+/+	+/-	9:130681643	21:8400398	CDS	intron	translocation/5'-5'	0	0	0	0	37	low	.	.	Zinc_finger__C2H2_type(100%)\|	.	.	ENSG00000130711	ENSG00000280441	.	.	downstream	downstream	mismatches(1)	.	.	.
FP236383.3	RPS2	+/+	-/-	21:8443754	16:1962794	intron	CDS	translocation	0	0	0	11	33	low	.	.	\|Ribosomal_protein_S5__C-terminal_domain(100%),Ribosomal_protein_S5__N-terminal_domain(9%)	.	.	ENSG00000280441	ENSG00000140988	.	.	downstream	downstream	multimappers(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916414	21:8399101	intron	intron	translocation/3'-3'	0	0	0	219	73	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	upstream	upstream	mismatches	.	.	.
LINC00486	PRKRIP1	+/.	+/.	2:32916554	7:102396444	intron	CDS	translocation	0	0	0	489	8	low	.	.	.	.	.	ENSG00000230876	ENSG00000128563	.	.	downstream	upstream	mismatches	.	.	.
UQCRH	LINC00486	+/.	+/.	1:46316626	2:32916551	3'UTR	intron	translocation	0	0	0	10	489	low	.	.	.	.	.	ENSG00000173660	ENSG00000230876	.	.	upstream	downstream	low_entropy	.	.	.
AP3S1	FP671120.4	+/+	+/+	5:115913909	21:8216862	3'UTR	intron	translocation	0	0	0	3	36	low	.	.	Clathrin_adaptor_complex_small_chain(100%)\|	.	.	ENSG00000177879	ENSG00000278996	.	.	downstream	upstream	homopolymer(1)	.	.	.
5_8S_rRNA(2483),FP236383.3(121227)	FP236383.3	./.	+/.	21:8259416	21:8398141	intergenic	intron	deletion/read-through	0	0	0	10	7	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches	.	.	.
AMIGO3	LINC00486	-/-	+/-	3:49718810	2:32916400	CDS	intron	translocation/5'-5'	0	0	0	6	53	low	.	.	Leucine_rich_repeat(100%)\|	.	.	ENSG00000176020	ENSG00000230876	.	.	upstream	downstream	mismatches	.	.	.
LINC00486	5_8S_rRNA(3363),FP236383.3(120347)	+/.	./.	2:32916414	21:8260296	intron	intergenic	translocation	0	0	0	219	68	low	.	.	.	.	.	ENSG00000230876	.	.	.	upstream	upstream	mismatches	.	.	.
LINC00486	PRKRIP1	+/.	+/.	2:32916552	7:102396444	intron	CDS	translocation	0	0	0	489	8	low	.	.	.	.	.	ENSG00000230876	ENSG00000128563	.	.	downstream	upstream	mismatches	.	.	.
FP236383.3	GMFG	+/+	-/-	21:8399369	19:39329621	intron	CDS	translocation	0	0	0	21	4	low	.	.	\|Cofilin/tropomyosin-type_actin-binding_protein(55%)	.	.	ENSG00000280441	ENSG00000130755	.	.	downstream	downstream	multimappers(1)	.	.	.
LINC00486	PRKRIP1	+/.	+/.	2:32916551	7:102396444	intron	CDS	translocation	0	0	0	489	8	low	.	.	.	.	.	ENSG00000230876	ENSG00000128563	.	.	downstream	upstream	mismatches	.	.	.
PPM1F-AS1	FP671120.4	+/-	+/+	22:21964302	21:8216092	exon	intron	translocation/3'-3'	0	0	0	0	56	low	.	.	.	.	.	ENSG00000224086	ENSG00000278996	.	.	upstream	upstream	multimappers(1)	.	.	.
KCNAB2	FP671120.6	+/+	-/+	1:6091387	21:8211072	intron	exon	translocation/5'-5'	0	0	1	3	24	low	.	.	Aldo/keto_reductase_family(45%)\|	.	.	ENSG00000069424	ENSG00000280800	.	.	downstream	upstream	min_support	.	.	.
FP671120.4	RPL13	+/+	+/+	21:8210294	16:89561020	intron	CDS	translocation	1	0	0	11	35	low	.	.	\|Ribosomal_protein_L13e(93%)	.	.	ENSG00000278996	ENSG00000167526	.	.	downstream	upstream	min_support	.	.	.
SRSF4	DAPK1	-/-	+/+	1:29172435	9:87499093	exon	CDS	translocation	0	0	1	1	1	low	.	.	RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(25%)\|Ankyrin_repeats_(3_copies)(100%),Ankyrin_repeats_(many_copies)(100%),Death_domain(100%),Protein_kinase_domain(100%)	.	.	ENSG00000116350	ENSG00000196730	.	.	upstream	upstream	min_support	.	.	.
ODF2L	5_8S_rRNA(3531),FP236383.3(120179)	-/-	./+	1:86360426	21:8260464	CDS/splice-site	intergenic	translocation	0	0	0	5	24	low	.	.	.	.	.	ENSG00000122417	.	.	.	upstream	upstream	multimappers(1)	.	.	.
APOBEC3F	APOBEC3G	+/+	+/+	22:39043054	22:39079051	CDS	CDS	deletion/read-through	0	0	1	2	6	low	.	.	Activation_induced_deaminase(58%),Novel_AID_APOBEC_clade_2(10%)\|Novel_AID_APOBEC_clade_2(90%)	.	.	ENSG00000128394	ENSG00000239713	.	.	downstream	upstream	min_support	.	.	.
DHX30	FP671120.7	+/+	-/+	3:47849968	21:8254887	CDS	exon	translocation/5'-5'	1	0	0	3	22	low	.	.	DEAD/DEAH_box_helicase(100%),Helicase_associated_domain_(HA2)(100%),Helicase_conserved_C-terminal_domain(100%),Oligonucleotide/oligosaccharide-binding_(OB)-fold(100%)\|	.	.	ENSG00000132153	ENSG00000281383	.	.	downstream	upstream	min_support	.	.	.
FP671120.4	FP236383.3	+/+	+/+	21:8217374	21:8397784	intron	intron	deletion/read-through	0	0	0	83	127	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
ACTB	ACTB	-/-	-/-	7:5528572	7:5529201	CDS	CDS	duplication	0	0	0	99	132	low	.	.	Actin(45%)\|Actin(71%)	.	.	ENSG00000075624	ENSG00000075624	.	.	upstream	downstream	homopolymer(1)	.	.	.
SRRM1	SRRM1	+/+	+/+	1:24671561	1:24671462	CDS	CDS	duplication/ITD	0	0	0	5	4	low	.	.	PWI_domain(100%)\|	.	.	ENSG00000133226	ENSG00000133226	.	.	downstream	upstream	hairpin(1)	.	.	.
AC009779.3	BLOC1S1	+/+	+/+	12:55719196	12:55719134	CDS	CDS	duplication	0	0	0	2	1	low	.	.	GCN5-like_protein_1_(GCN5L1)(88%)\|GCN5-like_protein_1_(GCN5L1)(51%)	.	.	ENSG00000258311	ENSG00000135441	.	.	downstream	upstream	duplicates(1),hairpin(1)	.	.	.
ACTG1	ACTG1P4	-/-	+/+	17:81512006	1:103569741	CDS	exon	translocation	0	0	0	53	0	low	.	.	Actin(22%)\|	.	.	ENSG00000184009	ENSG00000236085	.	.	upstream	upstream	mismatches(1)	.	.	.
ZMAT3	ZMAT3	-/-	-/-	3:179027513	3:179027713	CDS	CDS	duplication	0	0	0	1	2	low	.	.	Zinc-finger_of_C2H2_type(100%)\|Zinc-finger_double-stranded_RNA-binding(100%),Zinc-finger_of_C2H2_type(16%)	.	.	ENSG00000172667	ENSG00000172667	.	.	upstream	downstream	hairpin(1)	.	.	.
STARD13-AS	PPRC1	+/-	+/+	13:33239018	10:102140331	intron	CDS	translocation/3'-3'	0	0	0	0	2	low	.	.	\|RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)	.	.	ENSG00000236581	ENSG00000148840	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00486	KDM5C	+/.	-/.	2:32916412	X:53224888	intron	CDS	translocation	0	0	0	50	3	low	.	.	.	.	.	ENSG00000230876	ENSG00000126012	.	.	downstream	downstream	mismatches	.	.	.
RPL13A	FP236383.3	+/+	+/+	19:49490805	21:8445003	CDS	intron	translocation	0	0	0	55	17	low	.	.	Ribosomal_protein_L13(85%)\|	.	.	ENSG00000142541	ENSG00000280441	.	.	downstream	upstream	multimappers(1)	.	.	.
FP671120.4	NCOR1	+/+	-/-	21:8215821	17:16048955	intron	CDS	translocation	0	0	0	19	4	low	.	.	.	.	.	ENSG00000278996	ENSG00000141027	.	.	downstream	downstream	multimappers(1)	.	.	.
FP236383.3	FP671120.4	+/+	+/+	21:8442009	21:8214749	intron	intron	duplication	4	2	0	567	169	low	.	.	.	.	.	ENSG00000280441	ENSG00000278996	.	.	downstream	upstream	intronic,low_entropy(1)	.	.	.
FP236383.3	FASN	+/+	-/-	21:8446094	17:82092543	intron	CDS	translocation	0	1	0	39	7	low	.	.	\|Acyl_transferase_domain(100%),Beta-ketoacyl_synthase__C-terminal_domain(39%),KR_domain(100%),Ketoacyl-synthetase_C-terminal_extension(100%),Methyltransferase_domain(100%),Phosphopantetheine_attachment_site(100%),Polyketide_synthase_dehydratase(100%),Thioesterase_domain(100%),Zinc-binding_dehydrogenase(100%)	.	.	ENSG00000280441	ENSG00000169710	.	.	downstream	downstream	min_support	.	.	.
LINC00486	TPI1	+/.	+/.	2:32916556	12:6870392	intron	3'UTR	translocation	0	0	0	489	5	low	.	.	.	.	.	ENSG00000230876	ENSG00000111669	.	.	downstream	upstream	low_entropy	.	.	.
FP236383.3	FP236383.3	+/+	+/+	21:8442012	21:8441995	intron	intron	duplication/ITD	0	0	0	567	563	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	downstream	upstream	low_entropy(1)	.	.	.
MT-RNR2	FP671120.6	+/+	-/+	MT:2734	21:8210473	exon	exon	translocation/5'-5'	0	0	0	.	21	low	.	.	.	.	.	ENSG00000210082	ENSG00000280800	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
FP671120.6	FP236383.3	-/+	+/+	21:8210774	21:8397590	exon	intron	deletion/read-through/3'-3'	0	0	0	14	11	low	.	.	.	.	.	ENSG00000280800	ENSG00000280441	.	.	downstream	upstream	multimappers(1)	.	.	.
LINC00486	MAP3K11	+/.	-/.	2:32916557	11:65613470	intron	CDS	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000173327	.	.	downstream	downstream	low_entropy	.	.	.
FP671120.4	HMGB1P6	+/+	-/-	21:8215326	15:71165122	intron	exon	translocation	0	0	0	12	6	low	.	.	.	.	.	ENSG00000278996	ENSG00000259781	.	.	downstream	downstream	multimappers(1)	.	.	.
LAS1L	LAS1L	-/-	-/-	X:65523560	X:65532630	CDS/splice-site	CDS/splice-site	duplication/non-canonical_splicing	1	0	0	1	2	low	.	.	Las1-like_(100%)\|Las1-like_(45%)	.	.	ENSG00000001497	ENSG00000001497	.	.	upstream	downstream	min_support	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916555	21:8398683	intron	intron	translocation	0	0	0	489	21	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	downstream	upstream	low_entropy	.	.	.
ANKRD11	FP236383.3	-/-	+/+	16:89284492	21:8398754	CDS	intron	translocation	0	0	0	6	25	low	.	.	Ankyrin_repeat(100%),Ankyrin_repeats_(3_copies)(99%)\|	.	.	ENSG00000167522	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
LINC00486	RPS14	+/+	-/-	2:32916374	5:150446846	intron	CDS	translocation	0	0	0	50	33	low	.	.	\|Ribosomal_protein_S11(49%)	.	.	ENSG00000230876	ENSG00000164587	.	.	downstream	downstream	inconsistently_clipped(1)	.	.	.
SCAF8	FP236383.3	+/+	+/-	6:154832859	21:8392906	CDS	intron	translocation/5'-5'	0	0	0	6	24	low	.	.	CID_domain(100%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)\|	.	.	ENSG00000213079	ENSG00000280441	.	.	downstream	downstream	multimappers(1)	.	.	.
LINC00486	HERC5	+/.	+/.	2:32916555	4:88457400	intron	CDS	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000138646	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	CANX	+/.	+/.	2:32916562	5:179708336	intron	CDS	translocation	0	0	0	480	21	low	.	.	.	.	.	ENSG00000230876	ENSG00000127022	.	.	downstream	upstream	mismatches	.	.	.
TPR	LINC00486	-/.	+/.	1:186374906	2:32916556	CDS	intron	translocation	0	0	0	6	489	low	.	.	.	.	.	ENSG00000047410	ENSG00000230876	.	.	downstream	downstream	low_entropy	.	.	.
THRAP3	LINC00486	+/.	+/.	1:36291494	2:32916556	CDS	intron	translocation	0	0	0	6	489	low	.	.	.	.	.	ENSG00000054118	ENSG00000230876	.	.	upstream	downstream	low_entropy	.	.	.
FP236383.3	PRPS1L1(59074),HDAC9(29)	+/+	./+	21:8444649	7:18086920	intron	intergenic	translocation	0	0	0	59	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	AL022311.1	+/.	+/.	2:32916555	22:37877865	intron	exon	translocation	0	0	0	489	8	low	.	.	.	.	.	ENSG00000230876	ENSG00000279738	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916419	21:8216055	intron	intergenic	translocation/3'-3'	0	0	0	219	54	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	upstream	upstream	duplicates	.	.	.
MT-RNR1	AL160408.2	+/+	+/-	MT:1466	1:234607412	exon	exon	translocation/5'-5'	0	0	0	.	1	low	.	.	.	.	.	ENSG00000211459	ENSG00000228830	.	.	downstream	downstream	uninteresting_contigs(1)	.	.	.
LINC00486	EIF3L	+/.	+/.	2:32916557	22:37870195	intron	CDS	translocation	0	0	0	489	3	low	.	.	.	.	.	ENSG00000230876	ENSG00000100129	.	.	downstream	upstream	low_entropy	.	.	.
FP671120.4	LSP1	+/+	+/+	21:8215616	11:1883524	intron	CDS	translocation	0	1	0	27	8	low	.	.	\|Caldesmon(100%)	.	.	ENSG00000278996	ENSG00000130592	.	.	downstream	upstream	min_support	.	.	.
FP236383.3	HNRNPK	+/+	-/-	21:8398651	9:83971983	intron	CDS	translocation	0	0	0	23	7	low	.	.	\|KH_domain(34%)	.	.	ENSG00000280441	ENSG00000165119	.	.	downstream	downstream	multimappers(1)	.	.	.
LINC00486	PI4K2B	+/.	+/.	2:32916400	4:25234137	intron	5'UTR	translocation	0	0	0	53	14	low	.	.	.	.	.	ENSG00000230876	ENSG00000038210	.	.	downstream	upstream	mismatches	.	.	.
AC105052.3	UPK3BL2	-/-	-/-	7:102667156	7:102567030	CDS	intergenic	deletion/read-through	0	0	1	5	3	low	.	.	.	.	.	ENSG00000267645	ENSG00000284981	.	.	upstream	downstream	min_support	.	.	.
5_8S_rRNA(3295),FP236383.3(120415)	FP236383.3	./+	+/+	21:8260228	21:8443269	intergenic	intron	deletion/read-through	0	0	0	30	29	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1)	.	.	.
FASN	FASN	-/-	-/-	17:82088162	17:82088146	CDS	CDS	deletion/read-through	0	0	0	7	5	low	.	.	Acyl_transferase_domain(100%),Beta-ketoacyl_synthase__C-terminal_domain(100%),Beta-ketoacyl_synthase__N-terminal_domain(100%),Ketoacyl-synthetase_C-terminal_extension(100%),Polyketide_synthase_dehydratase(21%)\|KR_domain(100%),Methyltransferase_domain(100%),Phosphopantetheine_attachment_site(100%),Polyketide_synthase_dehydratase(75%),Thioesterase_domain(100%),Zinc-binding_dehydrogenase(100%)	.	.	ENSG00000169710	ENSG00000169710	.	.	upstream	downstream	read_through(1)	.	.	.
LINC00486	TPM3	+/+	-/-	2:32916556	1:154183073	intron	CDS	translocation	0	0	0	489	21	low	.	.	\|Tropomyosin(89%)	.	.	ENSG00000230876	ENSG00000143549	.	.	downstream	downstream	homopolymer(1)	.	.	.
FP236383.3	PLEC	+/+	-/-	21:8441905	8:143919469	intron	CDS	translocation	0	0	0	112	4	low	.	.	\|Plectin_repeat(55%)	.	.	ENSG00000280441	ENSG00000178209	.	.	downstream	downstream	multimappers(1)	.	.	.
POLR2J2	UPK3BL2	-/-	-/-	7:102667156	7:102567030	CDS	intergenic	deletion/read-through	0	0	1	5	3	low	.	.	RNA_polymerase_Rpb3/Rpb11_dimerisation_domain(73%)\|	.	.	ENSG00000228049	ENSG00000284981	.	.	upstream	downstream	min_support	.	.	.
HMGB1	HMGB1P9(24),ARPC2(15729)	-/-	./+	13:30461331	2:218201412	3'UTR	intergenic	translocation	0	0	0	4	0	low	.	.	HMG-box_domain(100%),HMG_(high_mobility_group)_box(100%)\|	.	.	ENSG00000189403	.	.	.	upstream	upstream	homopolymer(1)	.	.	.
FP236383.5	NLRC5	-/+	+/+	21:8438369	16:57034235	exon	CDS	translocation/3'-3'	0	0	0	27	4	low	.	.	\|Leucine_Rich_repeat(99%)	.	.	ENSG00000281181	ENSG00000140853	.	.	downstream	upstream	multimappers(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916556	21:8441971	intron	intron	translocation	0	0	0	489	567	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	downstream	upstream	low_entropy	.	.	.
POLR2J2	AC093668.1	-/-	-/-	7:102667156	7:102567030	CDS	CDS	deletion/read-through	0	0	1	5	3	low	.	.	RNA_polymerase_Rpb3/Rpb11_dimerisation_domain(73%)\|	.	.	ENSG00000228049	ENSG00000270249	.	.	upstream	downstream	min_support	.	.	.
C1orf43	PTER	-/-	+/-	1:154207541	10:16467966	CDS	intron	translocation/5'-5'	0	0	0	10	0	low	.	.	NICE-3_protein(100%)\|	.	.	ENSG00000143612	ENSG00000165983	.	.	upstream	downstream	mismatches(1)	.	.	.
HDLBP	HDLBP	-/-	-/-	2:241256663	2:241256698	CDS	CDS	duplication/ITD	0	0	0	4	7	low	.	.	KH_domain(5%)\|KH_domain(96%)	.	.	ENSG00000115677	ENSG00000115677	.	.	upstream	downstream	hairpin(1)	.	.	.
5_8S_rRNA(3529),FP236383.3(120181)	LAP3	./+	+/+	21:8260462	4:17583494	intergenic	CDS	translocation	0	0	0	35	12	low	.	.	\|Cytosol_aminopeptidase_family__N-terminal_domain(29%),Cytosol_aminopeptidase_family__catalytic_domain(100%)	.	.	.	ENSG00000002549	.	.	downstream	upstream	multimappers(1)	.	.	.
LINC00486	DKC1	+/.	+/.	2:32916557	X:154770814	intron	CDS	translocation	0	0	0	489	4	low	.	.	.	.	.	ENSG00000230876	ENSG00000130826	.	.	downstream	upstream	low_entropy	.	.	.
CARMIL1	HLA-DPA1	+/-	-/-	6:25412305	6:33069885	intron	CDS/splice-site	duplication/3'-3'	0	0	0	0	50	low	.	.	\|Class_II_histocompatibility_antigen__alpha_domain(100%),Immunoglobulin_C1-set_domain(100%)	.	.	ENSG00000079691	ENSG00000231389	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	GOLGA8A	+/+	-/-	2:32916457	15:34381608	intron	CDS	translocation	0	1	0	219	3	low	.	.	\|GM130_C-terminal_binding_motif(100%)	.	.	ENSG00000230876	ENSG00000175265	.	.	downstream	downstream	min_support	.	.	.
AC105052.3	POLR2J3	-/-	-/-	7:102667156	7:102567030	CDS	CDS	deletion/read-through	0	0	1	5	3	low	.	.	.	.	.	ENSG00000267645	ENSG00000285437	.	.	upstream	downstream	min_support	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916556	21:8441944	intron	intron	translocation	0	0	0	489	418	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	downstream	upstream	low_entropy	.	.	.
FP236383.3	PSME2	+/+	-/-	21:8442760	14:24146806	intron	5'UTR	translocation	0	0	0	10	4	low	.	.	\|Proteasome_activator_pa28_alpha_subunit(100%),Proteasome_activator_pa28_beta_subunit(100%)	.	.	ENSG00000280441	ENSG00000100911	.	.	downstream	downstream	mismatches(1)	.	.	.
FP671120.4	GAPDH	+/-	+/+	21:8218182	12:6538116	intron	CDS	translocation/3'-3'	0	0	0	5	49	low	.	.	.	.	.	ENSG00000278996	ENSG00000111640	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00486	ZPR1	+/.	-/.	2:32916556	11:116787514	intron	CDS	translocation	0	0	0	489	3	low	.	.	.	.	.	ENSG00000230876	ENSG00000109917	.	.	downstream	downstream	low_entropy	.	.	.
AC011603.2	TUBA1B	+/-	-/-	12:49127875	12:49129258	exon	CDS	duplication/3'-3'	0	0	0	2	0	low	.	.	\|Tubulin/FtsZ_family__GTPase_domain(44%),Tubulin_C-terminal_domain(100%)	.	.	ENSG00000258017	ENSG00000123416	.	.	upstream	downstream	mismatches(1)	.	.	.
RCSD1	LINC00486	+/.	+/.	1:167697405	2:32916555	CDS	intron	translocation	0	0	0	6	489	low	.	.	.	.	.	ENSG00000198771	ENSG00000230876	.	.	upstream	downstream	low_entropy	.	.	.
MTCH2	ZNF791	-/-	+/-	11:47638546	19:12625787	intron	intron	translocation/5'-5'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000109919	ENSG00000173875	.	.	upstream	downstream	homopolymer(1)	.	.	.
RN7SL91P(123597),METTL1P1(9845)	CCT7	./-	+/+	X:25184536	2:73244033	intergenic	CDS	translocation	0	0	0	0	0	low	.	.	\|TCP-1/cpn60_chaperonin_family(77%)	.	.	.	ENSG00000135624	.	.	upstream	upstream	mismatches(1)	.	.	.
ANKHD1	ANKHD1	+/+	+/+	5:140524178	5:140524102	CDS	CDS	duplication/ITD	0	0	0	2	2	low	.	.	Ankyrin_repeats_(3_copies)(100%)\|KH_domain(100%)	.	.	ENSG00000131503	ENSG00000131503	.	.	downstream	upstream	low_entropy(1)	.	.	.
FP671120.4	RPS2	+/-	-/-	21:8216932	16:1964540	intron	CDS	translocation/3'-3'	0	1	0	12	57	low	.	.	\|Ribosomal_protein_S5__C-terminal_domain(100%),Ribosomal_protein_S5__N-terminal_domain(100%)	.	.	ENSG00000278996	ENSG00000140988	.	.	upstream	downstream	min_support	.	.	.
TTF2	IGF1	+/+	-/+	1:117101562	12:102401113	3'UTR/splice-site	3'UTR	translocation/5'-5'	0	0	0	33	0	low	.	.	GRF_zinc_finger(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%)\|	.	.	ENSG00000116830	ENSG00000017427	.	.	downstream	upstream	mismatches(1)	.	.	.
MCM3AP	FP236383.5	-/-	-/+	21:46277656	21:8438197	CDS	exon	inversion/5'-5'	0	0	0	3	33	low	.	.	Nucleoporin_homology_of_Germinal-centre_associated_nuclear_protein(100%)\|	.	.	ENSG00000160294	ENSG00000281181	.	.	upstream	upstream	multimappers(1)	.	.	.
LINC00486	VWA8	+/.	-/.	2:32916410	13:41778053	intron	CDS	translocation	0	0	0	50	14	low	.	.	.	.	.	ENSG00000230876	ENSG00000102763	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	GOLIM4	+/.	-/.	2:32916556	3:168032646	intron	CDS	translocation	0	0	0	489	3	low	.	.	.	.	.	ENSG00000230876	ENSG00000173905	.	.	downstream	downstream	low_entropy	.	.	.
FP236383.3	RBM6	+/+	+/+	21:8441867	3:49975333	intron	CDS	translocation	0	0	0	42	7	low	.	.	\|G-patch_domain(100%),OCRE_domain(100%)	.	.	ENSG00000280441	ENSG00000004534	.	.	downstream	upstream	multimappers(1)	.	.	.
SPOCK2	PRPF8	-/+	-/-	10:72062925	17:1677046	intron	CDS	translocation/3'-3'	0	0	0	0	7	low	.	.	\|JAB1/Mov34/MPN/PAD-1_ubiquitin_protease(100%),PROCN_(NUC071)_domain(24%),PROCT_(NUC072)_domain(100%),PRP8_domain_IV_core(100%),RNA_recognition_motif_of_the_spliceosomal_PrP8(100%),U5-snRNA_binding_site_2_of_PrP8(100%),U6-snRNA_interacting_domain_of_PrP8(100%)	.	.	ENSG00000107742	ENSG00000174231	.	.	downstream	downstream	inconsistently_clipped(1)	.	.	.
CD74	CR392039.1(753),CR392039.3(8313)	-/-	./+	5:150407192	21:8988183	CDS	intergenic	translocation	0	0	0	53	5	low	.	.	CLIP__MHC2_interacting(62%)\|	.	.	ENSG00000019582	.	.	.	upstream	upstream	multimappers(1)	.	.	.
PRDM2	PRDM2	+/+	+/+	1:13782831	1:13778418	CDS/splice-site	CDS/splice-site	duplication/non-canonical_splicing	1	0	0	1	3	low	.	.	C2H2-type_zinc_finger(100%),SET_domain(100%),Zinc_finger__C2H2_type(100%)\|C2H2-type_zinc_finger(100%),Zinc_finger__C2H2_type(100%)	.	.	ENSG00000116731	ENSG00000116731	.	.	downstream	upstream	min_support	.	.	.
RCC2	LINC00486	-/.	+/.	1:17416577	2:32916552	CDS	intron	translocation	0	0	0	11	489	low	.	.	.	.	.	ENSG00000179051	ENSG00000230876	.	.	downstream	downstream	low_entropy	.	.	.
FP671120.7	5_8S_rRNA(1842),FP236383.3(121868)	-/+	./+	21:8254982	21:8258775	exon	intergenic	deletion/read-through	0	0	0	17	38	low	.	.	.	.	.	ENSG00000281383	.	.	.	downstream	upstream	read_through(1)	.	.	.
LINC00486	RPL3	+/.	-/.	2:32916555	22:39317629	intron	CDS	translocation	0	0	0	489	39	low	.	.	.	.	.	ENSG00000230876	ENSG00000100316	.	.	downstream	downstream	low_entropy	.	.	.
FP236383.4	MACIR	-/+	+/+	21:8393898	5:103275938	exon	CDS	translocation/3'-3'	0	0	0	12	4	low	.	.	\|UNC119-binding_protein_C5orf30_homologue(97%)	.	.	ENSG00000280614	ENSG00000181751	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	VWA8	+/.	-/.	2:32916408	13:41778053	intron	CDS	translocation	0	0	0	50	14	low	.	.	.	.	.	ENSG00000230876	ENSG00000102763	.	.	downstream	downstream	mismatches	.	.	.
YBX3	FP236383.3	-/-	+/+	12:10723008	21:8443365	CDS	intron	translocation	0	0	0	9	61	low	.	.	.	.	.	ENSG00000060138	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
LINC00486	FP671120.4	+/.	+/.	2:32916414	21:8216067	intron	intron	translocation/3'-3'	0	0	0	219	55	low	.	.	.	.	.	ENSG00000230876	ENSG00000278996	.	.	upstream	upstream	mismatches	.	.	.
FP671120.4	FP236383.3	+/+	+/+	21:8260265	21:8399068	intergenic	intron	deletion/read-through	0	0	1	31	64	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	mismatches(3),multimappers(1),non_coding_neighbors	.	.	.
AL022318.4	APOBEC3F	+/+	+/+	22:39031830	22:39052117	CDS	CDS	deletion/read-through	0	0	0	6	7	low	.	.	Novel_AID_APOBEC_clade_2(76%)\|Novel_AID_APOBEC_clade_2(32%)	.	.	ENSG00000284554	ENSG00000128394	.	.	downstream	upstream	read_through	.	.	.
FP671120.4	CPT1A	+/+	-/-	21:8215971	11:68815389	intron	CDS	translocation	0	0	0	43	4	low	.	.	\|Carnitine_O-palmitoyltransferase_N-terminus(39%),Choline/Carnitine_o-acyltransferase(100%)	.	.	ENSG00000278996	ENSG00000110090	.	.	downstream	downstream	multimappers(1)	.	.	.
LINC00486	VWA8	+/.	-/.	2:32916405	13:41778053	intron	CDS	translocation	0	0	0	50	14	low	.	.	.	.	.	ENSG00000230876	ENSG00000102763	.	.	downstream	downstream	mismatches	.	.	.
FP671120.4	FP236383.3	+/+	+/+	21:8217372	21:8444634	intron	intron	deletion/read-through	1	3	0	83	27	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	multimappers(1),non_coding_neighbors	.	.	.
LINC00486	OLA1	+/.	-/.	2:32916557	2:174246807	intron	CDS	inversion	0	0	0	489	1	low	.	.	.	.	.	ENSG00000230876	ENSG00000138430	.	.	downstream	downstream	low_entropy	.	.	.
RPS23	RPS23	-/-	-/-	5:82276104	5:82277811	3'UTR	CDS	duplication	0	1	0	48	43	low	.	.	Ribosomal_protein_S12/S23(99%)\|Ribosomal_protein_S12/S23(100%)	.	.	ENSG00000186468	ENSG00000186468	.	.	upstream	downstream	intragenic_exonic	.	.	.
CCDC6	CCDC6	-/-	-/-	10:59859231	10:59859240	intron	intron	duplication/ITD	0	0	0	1	2	low	.	.	Uncharacterized_conserved_protein_H4_(DUF2046)(17%)\|Uncharacterized_conserved_protein_H4_(DUF2046)(82%)	.	.	ENSG00000108091	ENSG00000108091	.	.	upstream	downstream	inconsistently_clipped(1)	.	.	.
LINC00486	VWA8	+/.	-/.	2:32916404	13:41778053	intron	CDS	translocation	0	0	0	50	14	low	.	.	.	.	.	ENSG00000230876	ENSG00000102763	.	.	downstream	downstream	mismatches	.	.	.
RALY	RALY	+/+	+/+	20:34077240	20:34077187	CDS	CDS	duplication/ITD	0	0	0	4	4	low	.	.	RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)\|	.	.	ENSG00000125970	ENSG00000125970	.	.	downstream	upstream	hairpin(1)	.	.	.
RPS13	FP236383.3	-/-	+/+	11:17075576	21:8441337	CDS	intron	translocation	0	0	1	28	19	low	.	.	Ribosomal_S13/S15_N-terminal_domain(100%)\|	.	.	ENSG00000110700	ENSG00000280441	.	.	upstream	upstream	min_support	.	.	.
RBBP6	RBBP6	+/+	+/+	16:24570058	16:24569964	CDS	CDS	duplication/ITD	0	0	0	1	2	low	.	.	DWNN_domain(100%),U-box_domain(100%),Zinc_knuckle(100%)\|	.	.	ENSG00000122257	ENSG00000122257	.	.	downstream	upstream	duplicates(1),hairpin(1)	.	.	.
ADA	5_8S_rRNA(3394),FP236383.3(120316)	-/-	./+	20:44622829	21:8260327	CDS/splice-site	intergenic	translocation	0	0	0	7	62	low	.	.	Adenosine_deaminase(74%)\|	.	.	ENSG00000196839	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00486	VWA8	+/.	-/.	2:32916403	13:41778053	intron	CDS	translocation	0	0	0	50	14	low	.	.	.	.	.	ENSG00000230876	ENSG00000102763	.	.	downstream	downstream	mismatches	.	.	.
SCAF8	FP236383.3	+/+	+/-	6:154832859	21:8437116	CDS	intron	translocation/5'-5'	0	0	0	6	20	low	.	.	CID_domain(100%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)\|	.	.	ENSG00000213079	ENSG00000280441	.	.	downstream	downstream	multimappers(1)	.	.	.
FP236383.3	FP236383.3	+/+	+/+	21:8397875	21:8397809	intron	intron	duplication/ITD	0	0	0	115	119	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	downstream	upstream	hairpin(1)	.	.	.
5_8S_rRNA(1075),CT867976.1(223710)	H2AC19	./-	+/+	22:11251034	1:149851143	intergenic	CDS	translocation	0	0	0	0	72	low	.	.	\|C-terminus_of_histone_H2A(100%),Core_histone_H2A/H2B/H3/H4(93%)	.	.	.	ENSG00000272196	.	.	upstream	upstream	mismatches(1)	.	.	.
HLA-DRA	FP671120.6	+/+	-/+	6:32442473	21:8211010	CDS	exon	translocation/5'-5'	0	0	0	20	34	low	.	.	Class_II_histocompatibility_antigen__alpha_domain(10%)\|	.	.	ENSG00000204287	ENSG00000280800	.	.	downstream	upstream	mismatches	.	.	.
FP236383.3	CCAR2	+/-	+/-	21:8397829	8:22621502	intron	3'UTR	translocation	0	0	0	115	5	low	.	.	.	.	.	ENSG00000280441	ENSG00000158941	.	.	upstream	downstream	multimappers(1)	.	.	.
FP236383.3	FP236383.3	+/+	+/+	21:8443398	21:8443335	intron	intron	duplication/ITD	0	0	0	62	41	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	downstream	upstream	low_entropy(1),merge_adjacent	.	.	.
TAP1	TAP1	-/-	-/-	6:32848781	6:32850462	CDS	CDS	duplication	1	0	0	6	5	low	.	.	ABC_transporter_transmembrane_region(100%)\|ABC_transporter(100%),ABC_transporter_transmembrane_region(33%)	.	.	ENSG00000168394	ENSG00000168394	.	.	upstream	downstream	intragenic_exonic	.	.	.
TRAK1	RAP1GAP2	+/+	+/+	3:42210117	17:2776853	CDS	intron	translocation	0	0	0	2	0	low	.	.	HAP1_N-terminal_conserved_region(100%),Kinesin_associated_protein(100%)\|Rap/ran-GAP(100%)	.	.	ENSG00000182606	ENSG00000132359	.	.	downstream	upstream	mismatches(1)	.	.	.
DIAPH1	DIAPH1	-/-	-/-	5:141524215	5:141526136	CDS	CDS	duplication	0	0	0	0	7	low	.	.	DRF_Autoregulatory_Domain(2%),Diaphanous_FH3_Domain(100%),Diaphanous_GTPase-binding_Domain(100%),Formin_Homology_2_Domain(100%),Formin_Homology_Region_1(100%)\|DRF_Autoregulatory_Domain(100%)	.	.	ENSG00000131504	ENSG00000131504	.	.	upstream	downstream	hairpin(1)	.	.	.
GPATCH8	FP236383.3	-/-	+/+	17:44397883	21:8442877	CDS	intron	translocation	0	0	0	4	12	low	.	.	G-patch_domain(100%),Zinc-finger_double-stranded_RNA-binding(100%)\|	.	.	ENSG00000186566	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
LINC00486	5_8S_rRNA(2005),FP236383.3(121705)	+/.	./.	2:32916555	21:8258938	intron	intergenic	translocation	0	0	0	489	466	low	.	.	.	.	.	ENSG00000230876	.	.	.	downstream	upstream	low_entropy	.	.	.
AMIGO3	LINC00486	-/-	+/-	3:49718810	2:32916406	CDS	intron	translocation/5'-5'	0	0	0	6	50	low	.	.	Leucine_rich_repeat(100%)\|	.	.	ENSG00000176020	ENSG00000230876	.	.	upstream	downstream	mismatches	.	.	.
PRRC2A	PRRC2A	+/+	+/+	6:31632624	6:31632498	CDS	CDS	duplication	0	1	0	2	3	low	.	.	BAT2_N-terminus(100%)\|	.	.	ENSG00000204469	ENSG00000204469	.	.	downstream	upstream	intragenic_exonic	.	.	.
ZDHHC14	TXNDC11	+/+	-/-	6:157432094	16:11679283	intron	CDS	translocation	0	0	0	0	7	low	.	.	.	.	.	ENSG00000175048	ENSG00000153066	.	.	downstream	downstream	homopolymer(1)	.	.	.
CASKIN1	DPP7	-/+	-/-	16:2180849	9:137110783	CDS	CDS/splice-site	translocation/3'-3'	0	0	0	0	2	low	.	.	\|Serine_carboxypeptidase_S28(3%)	.	.	ENSG00000167971	ENSG00000176978	.	.	downstream	downstream	inconsistently_clipped(1)	.	.	.
TTF2	AC107396.1	+/+	-/-	1:117101562	4:57601331	3'UTR/splice-site	intron	translocation	0	0	0	33	0	low	.	.	GRF_zinc_finger(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%)\|	.	.	ENSG00000116830	ENSG00000251049	.	.	downstream	downstream	mismatches(1)	.	.	.
SLC8A1-AS1	PARK7	+/+	+/+	2:40133410	1:7965336	intron	CDS	translocation	0	0	0	0	19	low	.	.	\|DJ-1/PfpI_family(82%)	.	.	ENSG00000227028	ENSG00000116288	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	DDAH1	+/+	-/+	21:8217379	1:85465066	intron	5'UTR	translocation/5'-5'	0	0	0	83	0	low	.	.	.	.	.	ENSG00000278996	ENSG00000153904	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.4	PMVK	-/+	-/-	21:8394191	1:154929160	exon	CDS	translocation/3'-3'	0	0	0	24	4	low	.	.	\|Phosphomevalonate_kinase_(58%)	.	.	ENSG00000280614	ENSG00000163344	.	.	downstream	downstream	multimappers(1)	.	.	.
IGKV1OR2-118(9611),AC233263.1(34362)	FP236383.3	./-	+/-	2:90325447	21:8444634	intergenic	intron	translocation	0	0	0	1	46	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	downstream	mismatches(1)	.	.	.
PITPNC1	PARP12	+/-	-/-	17:67378863	7:140046917	intron	CDS	translocation/3'-3'	0	0	0	0	14	low	.	.	\|Poly(ADP-ribose)_polymerase_catalytic_domain(100%),WWE_domain(100%)	.	.	ENSG00000154217	ENSG00000059378	.	.	upstream	downstream	mismatches(1)	.	.	.
UQCRH	LINC00486	+/.	+/.	1:46316626	2:32916554	3'UTR	intron	translocation	0	0	0	10	489	low	.	.	.	.	.	ENSG00000173660	ENSG00000230876	.	.	upstream	downstream	low_entropy	.	.	.
PPP2R5C	FP236383.3	+/+	+/+	14:101912574	21:8389919	3'UTR	intron	translocation	0	0	0	0	2	low	.	.	Protein_phosphatase_2A_regulatory_B_subunit_(B56_family)(100%)\|	.	.	ENSG00000078304	ENSG00000280441	.	.	downstream	upstream	multimappers(1)	.	.	.
LINC00486	CANX	+/.	+/.	2:32916552	5:179708336	intron	CDS	translocation	0	0	0	489	21	low	.	.	.	.	.	ENSG00000230876	ENSG00000127022	.	.	downstream	upstream	mismatches	.	.	.
PSME2	PSME2P1	-/-	+/+	14:24143461	5:98213826	CDS	exon	translocation	1	0	0	0	1	low	.	.	Proteasome_activator_pa28_alpha_subunit(100%),Proteasome_activator_pa28_beta_subunit(91%)\|	.	.	ENSG00000100911	ENSG00000238000	.	.	upstream	upstream	min_support	.	.	.
FP671120.4	FP236383.3	+/+	+/+	21:8217366	21:8400399	intron	intron	deletion/read-through	0	2	0	83	87	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	low_entropy(2),mismatches(3),non_coding_neighbors	.	.	.
ODF2L	FP671120.4	-/-	+/+	1:86360426	21:8216235	CDS/splice-site	intron	translocation	1	0	0	5	21	low	.	.	.	.	.	ENSG00000122417	ENSG00000278996	.	.	upstream	upstream	in_vitro	.	.	.
FP671120.6	5_8S_rRNA(1842),FP236383.3(121868)	-/+	./+	21:8210774	21:8258775	exon	intergenic	deletion/read-through	1	0	0	14	38	low	.	.	.	.	.	ENSG00000280800	.	.	.	downstream	upstream	non_coding_neighbors	.	.	.
CCT7P1	CCT7	+/+	+/+	6:149880557	2:73244039	exon	CDS	translocation	0	0	0	0	0	low	.	.	\|TCP-1/cpn60_chaperonin_family(76%)	.	.	ENSG00000217733	ENSG00000135624	.	.	downstream	upstream	mismatches(1)	.	.	.
STAM2	STAM2	-/-	-/-	2:152135652	2:152135655	intron	intron	duplication/ITD	0	0	0	0	1	low	.	.	SH3_domain(60%),Ubiquitin_interaction_motif(100%),VHS_domain(100%)\|SH3_domain(39%)	.	.	ENSG00000115145	ENSG00000115145	.	.	upstream	downstream	hairpin(1)	.	.	.
GACAT2	PARP12	-/-	-/-	18:8705255	7:140046917	intron	CDS	translocation	0	0	0	0	14	low	.	.	\|Poly(ADP-ribose)_polymerase_catalytic_domain(100%),WWE_domain(100%)	.	.	ENSG00000265962	ENSG00000059378	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.4	AF241726.1	+/+	+/-	21:8217379	X:38561519	intron	intron	translocation/5'-5'	0	0	0	83	0	low	.	.	.	.	.	ENSG00000278996	ENSG00000250349	.	.	downstream	downstream	mismatches(1)	.	.	.
H3C15	LINC00486	+/.	+/.	1:149852910	2:32916555	CDS	intron	translocation	0	0	0	34	489	low	.	.	.	.	.	ENSG00000203852	ENSG00000230876	.	.	upstream	downstream	low_entropy	.	.	.
LINC00486	INTS1	+/.	-/.	2:32916555	7:1479662	intron	CDS	translocation	0	0	0	489	4	low	.	.	.	.	.	ENSG00000230876	ENSG00000164880	.	.	downstream	downstream	low_entropy	.	.	.
AMIGO3	LINC00486	-/-	+/-	3:49718810	2:32916407	CDS	intron	translocation/5'-5'	0	0	0	6	50	low	.	.	Leucine_rich_repeat(100%)\|	.	.	ENSG00000176020	ENSG00000230876	.	.	upstream	downstream	mismatches	.	.	.
LINC00486	MYH9	+/.	-/.	2:32916556	22:36293334	intron	CDS	translocation	0	0	0	489	0	low	.	.	.	.	.	ENSG00000230876	ENSG00000100345	.	.	downstream	downstream	low_entropy	.	.	.
ADGRG2	PARP12	-/+	-/-	X:19122559	7:140046917	5'UTR	CDS	translocation/3'-3'	0	0	0	0	14	low	.	.	\|Poly(ADP-ribose)_polymerase_catalytic_domain(100%),WWE_domain(100%)	.	.	ENSG00000173698	ENSG00000059378	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	GTF3C3	+/.	-/.	2:32916558	2:196790048	intron	CDS	inversion	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000119041	.	.	downstream	downstream	low_entropy	.	.	.
TTF2	ASCC3	+/+	-/+	1:117101562	6:100511366	3'UTR/splice-site	intron	translocation/5'-5'	0	0	0	33	0	low	.	.	GRF_zinc_finger(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%)\|	.	.	ENSG00000116830	ENSG00000112249	.	.	downstream	upstream	mismatches(1)	.	.	.
AC092042.3	RPL10	+/-	+/+	3:42952812	X:154399541	intron	CDS	translocation/3'-3'	0	1	0	0	33	low	.	.	\|Ribosomal_protein_L16p/L10e(77%)	.	.	ENSG00000273291	ENSG00000147403	.	.	upstream	upstream	min_support	.	.	.
MARS1	FP671120.6	+/-	-/+	12:57475473	21:8210668	exon	exon	translocation	0	1	0	0	22	low	.	.	.	.	.	ENSG00000166986	ENSG00000280800	.	.	upstream	upstream	min_support	.	.	.
LINC00486	R3HDM4	+/.	-/.	2:32916383	19:901447	intron	CDS	translocation	0	0	0	53	4	low	.	.	.	.	.	ENSG00000230876	ENSG00000198858	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	NOMO2	+/.	-/.	2:32916556	16:18542701	intron	CDS	translocation	0	0	0	489	6	low	.	.	.	.	.	ENSG00000230876	ENSG00000185164	.	.	downstream	downstream	low_entropy	.	.	.
CAMTA1	PDCD11	+/+	+/+	1:7335165	10:103425192	intron	CDS	translocation	0	0	0	0	5	low	.	.	CG-1_domain(68%)\|S1_RNA_binding_domain(23%),Suppressor_of_forked_protein_(Suf)(100%)	.	.	ENSG00000171735	ENSG00000148843	.	.	downstream	upstream	homopolymer(1)	.	.	.
OGFR	OGFR	+/+	+/+	20:62813585	20:62813526	CDS	CDS	duplication/ITD	0	0	0	3	3	low	.	.	Opioid_growth_factor_receptor_(OGFr)_conserved_region(100%),Opioid_growth_factor_receptor_repeat(100%)\|Opioid_growth_factor_receptor_repeat(13%)	.	.	ENSG00000060491	ENSG00000060491	.	.	downstream	upstream	hairpin(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916556	21:8441965	intron	intron	translocation	0	0	0	489	567	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	downstream	upstream	low_entropy	.	.	.
HFM1	PHF19	-/-	-/-	1:91387449	9:120861148	intron	CDS	translocation	0	1	0	4	0	low	.	.	\|Polycomb-like_MTF2_factor_2(100%)	.	.	ENSG00000162669	ENSG00000119403	.	.	upstream	downstream	min_support	.	.	.
ACTG1	POTEM	-/-	+/+	17:81512006	14:18999058	CDS	3'UTR	translocation	0	0	0	53	0	low	.	.	Actin(22%)\|	.	.	ENSG00000184009	ENSG00000222036	.	.	upstream	upstream	mismatches(1)	.	.	.
GPATCH8	5_8S_rRNA(2910),FP236383.3(120800)	-/-	./+	17:44397883	21:8259843	CDS	intergenic	translocation	0	0	0	4	19	low	.	.	G-patch_domain(100%),Zinc-finger_double-stranded_RNA-binding(100%)\|	.	.	ENSG00000186566	.	.	.	upstream	upstream	multimappers(1)	.	.	.
RNU6-120P(18006),EXOGP1(43991)	TSNAX-DISC1	./+	+/+	18:21138512	1:231694594	intergenic	3'UTR	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000270106	.	.	downstream	upstream	mismatches(1)	.	.	.
MYH9	FP236383.5	-/-	-/+	22:36285772	21:8438135	CDS	exon	translocation/5'-5'	0	0	0	0	23	low	.	.	Myosin_N-terminal_SH3-like_domain(100%),Myosin_head_(motor_domain)(100%),Myosin_tail(81%)\|	.	.	ENSG00000100345	ENSG00000281181	.	.	upstream	upstream	multimappers(1)	.	.	.
LINC00486	MYH9	+/.	-/.	2:32916555	22:36292240	intron	intron	translocation	0	0	0	489	23	low	.	.	.	.	.	ENSG00000230876	ENSG00000100345	.	.	downstream	downstream	duplicates	.	.	.
AC145207.2	LINC00486	+/+	+/-	17:81868406	2:32916556	exon	intron	translocation/5'-5'	0	0	0	7	489	low	.	.	.	.	.	ENSG00000262413	ENSG00000230876	.	.	downstream	downstream	low_entropy	.	.	.
FP671120.4	FP236383.3	+/+	+/+	21:8216926	21:8399965	intron	intron	deletion/read-through	1	0	0	31	5	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	mismatches(1),non_coding_neighbors	.	.	.
USP7	KIAA1217	-/-	+/-	16:8923205	10:24409284	intron	intron	translocation/5'-5'	0	0	0	9	0	low	.	.	MATH_domain(43%)\|	.	.	ENSG00000187555	ENSG00000120549	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	SERINC1	+/+	-/-	2:32916553	6:122456598	intron	CDS	translocation	0	0	0	489	15	low	.	.	\|Serine_incorporator_(Serinc)(84%)	.	.	ENSG00000230876	ENSG00000111897	.	.	downstream	downstream	homopolymer(1)	.	.	.
RPL14	AC007368.1	+/+	+/-	3:40462078	12:126263023	CDS	intron	translocation/5'-5'	0	0	0	66	0	low	.	.	Ribosomal_protein_L14(100%)\|	.	.	ENSG00000188846	ENSG00000255595	.	.	downstream	downstream	homopolymer(1)	.	.	.
FP671120.4	FP236383.3	+/+	+/+	21:8216097	21:8399143	intron	intron	deletion/read-through	0	0	0	54	71	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
USP7	EPS15-AS1	-/-	+/+	16:8923205	1:51526500	intron	intron	translocation	0	0	0	9	0	low	.	.	MATH_domain(43%)\|	.	.	ENSG00000187555	ENSG00000227070	.	.	upstream	upstream	mismatches(1)	.	.	.
AC093668.1	RASA4B	-/-	-/-	7:102583024	7:102483689	intron	CDS	deletion/read-through	0	0	1	5	7	low	.	.	.	.	.	ENSG00000270249	ENSG00000170667	.	.	upstream	downstream	min_support	.	.	.
KDM1A	ARHGEF3	+/+	-/+	1:23055146	3:56826733	CDS	intron	translocation/5'-5'	0	0	0	7	0	low	.	.	SWIRM_domain(100%)\|	.	.	ENSG00000004487	ENSG00000163947	.	.	downstream	upstream	mismatches(1)	.	.	.
LRRK1	LRRK1	+/+	+/+	15:101021801	15:101021814	exon	exon	deletion/read-through	0	0	0	2	2	low	.	.	Ankyrin_repeats_(3_copies)(100%)\|C-terminal_of_Roc__COR__domain(100%),Protein_kinase_domain(100%),Ras_of_Complex__Roc__domain_of_DAPkinase(100%)	.	.	ENSG00000154237	ENSG00000154237	.	.	downstream	upstream	read_through(2)	.	.	.
SNX4	SNX4	-/-	-/-	3:125451305	3:125451419	CDS/splice-site	CDS/splice-site	duplication/non-canonical_splicing	1	0	0	1	1	low	.	.	PX_domain(100%)\|	.	.	ENSG00000114520	ENSG00000114520	.	.	upstream	downstream	min_support	.	.	.
PRMT5	PRMT5	-/-	-/-	14:22926133	14:22927660	CDS/splice-site	CDS/splice-site	duplication/non-canonical_splicing	0	1	0	0	2	low	.	.	PRMT5_TIM_barrel_domain(87%)\|PRMT5_TIM_barrel_domain(72%),PRMT5_arginine-N-methyltransferase(100%),PRMT5_oligomerisation_domain(100%)	.	.	ENSG00000100462	ENSG00000100462	.	.	upstream	downstream	min_support	.	.	.
CRLF2(23878),CSF2RA(32199)	ANKHD1-EIF4EBP3	./+	+/+	X:1236601	5:140529416	intergenic	CDS	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000254996	.	.	downstream	upstream	mismatches(1)	.	.	.
WIPI2	ASCC2	+/+	-/-	7:5223304	22:29838228	intron	CDS	translocation	0	0	0	0	5	low	.	.	\|CUE_domain(100%)	.	.	ENSG00000157954	ENSG00000100325	.	.	downstream	downstream	mismatches(1)	.	.	.
SELENOK	SELENOK	-/-	-/-	3:53885474	3:53885524	3'UTR	3'UTR	duplication/ITD	0	0	0	3	4	low	.	.	Selenoprotein_SelK_SelG_(100%)\|	.	.	ENSG00000113811	ENSG00000113811	.	.	upstream	downstream	duplicates(1),hairpin(1)	.	.	.
EPHA6	CCT7	+/-	+/+	3:97281528	2:73244034	intron	CDS	translocation/3'-3'	0	0	0	0	0	low	.	.	\|TCP-1/cpn60_chaperonin_family(76%)	.	.	ENSG00000080224	ENSG00000135624	.	.	upstream	upstream	mismatches(1)	.	.	.
AC105052.1	RASA4B	-/-	-/-	7:102583024	7:102483689	3'UTR	CDS	deletion/read-through	0	0	1	5	7	low	.	.	.	.	.	ENSG00000205236	ENSG00000170667	.	.	upstream	downstream	min_support	.	.	.
HNF4G(223180),AC011029.1(372105)	CCT7	./-	+/+	8:75790014	2:73244034	intergenic	CDS	translocation	0	0	0	0	0	low	.	.	\|TCP-1/cpn60_chaperonin_family(76%)	.	.	.	ENSG00000135624	.	.	upstream	upstream	mismatches(1)	.	.	.
AC018754.1(58110),LINC02488(104590)	CCT7	./+	+/+	5:87557450	2:73244034	intergenic	CDS	translocation	0	0	0	0	0	low	.	.	\|TCP-1/cpn60_chaperonin_family(76%)	.	.	.	ENSG00000135624	.	.	downstream	upstream	mismatches(1)	.	.	.
SRRM2	SRRM2	+/+	+/+	16:2766584	16:2766543	CDS	CDS	duplication/ITD	0	0	0	6	6	low	.	.	cwf21_domain(100%)\|	.	.	ENSG00000167978	ENSG00000167978	.	.	downstream	upstream	duplicates(1),hairpin(1)	.	.	.
ASCC3	CCT7	-/-	+/+	6:100613563	2:73244035	intron	CDS	translocation	0	0	0	0	0	low	.	.	DEAD/DEAH_box_helicase(100%),Helicase_conserved_C-terminal_domain(63%),Sec63_Brl_domain(45%)\|TCP-1/cpn60_chaperonin_family(76%)	.	.	ENSG00000112249	ENSG00000135624	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.4	TRAPPC9	-/+	-/-	21:8393835	8:140300536	exon	CDS	translocation/3'-3'	0	0	0	12	4	low	.	.	\|Transport_protein_Trs120_or_TRAPPC9__TRAPP_II_complex_subunit(26%)	.	.	ENSG00000280614	ENSG00000167632	.	.	downstream	downstream	homopolymer(1)	.	.	.
RPS15AP14(10020),AC093459.1(62623)	CCT7	./-	+/+	2:175194627	2:73244034	intergenic	CDS	inversion	0	0	0	0	0	low	.	.	\|TCP-1/cpn60_chaperonin_family(76%)	.	.	.	ENSG00000135624	.	.	upstream	upstream	mismatches(1)	.	.	.
EWSR1	EWSR1	+/+	+/+	22:29287042	22:29286989	CDS	CDS	duplication/ITD	0	0	0	9	8	low	.	.	\|RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%),Zn-finger_in_Ran_binding_protein_and_others(100%)	.	.	ENSG00000182944	ENSG00000182944	.	.	downstream	upstream	hairpin(1)	.	.	.
AC131274.3(4127713),AC069061.1(147278)	CCT7	./+	+/+	17:26834416	2:73244033	intergenic	CDS	translocation	0	0	0	0	0	low	.	.	\|TCP-1/cpn60_chaperonin_family(77%)	.	.	.	ENSG00000135624	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	TULP4	+/+	+/+	2:32916547	6:158501883	intron	CDS	translocation	0	0	0	489	1	low	.	.	\|Tub_family(100%)	.	.	ENSG00000230876	ENSG00000130338	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
LINC00486	5_8S_rRNA(2017),FP236383.3(121693)	+/.	./.	2:32916554	21:8258950	intron	intergenic	translocation	0	0	0	489	511	low	.	.	.	.	.	ENSG00000230876	.	.	.	downstream	upstream	low_entropy	.	.	.
ZFYVE26	AC026797.1(41805),HMGB3P3(110881)	-/-	./+	14:67754071	5:6178976	CDS/splice-site	intergenic	translocation	0	0	0	2	0	low	.	.	FYVE_zinc_finger(100%)\|	.	.	ENSG00000072121	.	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00486	SSH1	+/.	-/.	2:32916559	12:108788250	intron	CDS	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000084112	.	.	downstream	downstream	low_entropy	.	.	.
LINC00486	TULP4	+/+	+/+	2:32916545	6:158501883	intron	CDS	translocation	0	0	0	489	1	low	.	.	\|Tub_family(100%)	.	.	ENSG00000230876	ENSG00000130338	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
LINC00486	NR2C2	+/.	+/.	2:32916555	3:15016225	intron	CDS	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000177463	.	.	downstream	upstream	low_entropy	.	.	.
RBM27	AC091959.1	+/+	+/+	5:146230676	5:146229717	CDS	CDS/splice-site	duplication	1	0	0	1	1	low	.	.	PWI_domain(100%)\|RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%),Zinc_finger_C-x8-C-x5-C-x3-H_type_(and_similar)(100%)	.	.	ENSG00000091009	ENSG00000275740	.	.	downstream	upstream	intragenic_exonic	.	.	.
RPL14	SEC22B(7958),AC244669.2(12607)	+/+	./-	3:40462078	1:120184478	CDS	intergenic	translocation	0	0	0	66	0	low	.	.	Ribosomal_protein_L14(100%)\|	.	.	ENSG00000188846	.	.	.	downstream	downstream	homopolymer(1)	.	.	.
LINC00486	GPR15	+/.	+/.	2:32916556	3:98532072	intron	CDS	translocation	0	0	0	489	5	low	.	.	.	.	.	ENSG00000230876	ENSG00000154165	.	.	downstream	upstream	low_entropy	.	.	.
FP671120.4	HMGB1P5	+/+	+/+	21:8215326	3:22382114	intron	exon	translocation	0	1	0	12	6	low	.	.	.	.	.	ENSG00000278996	ENSG00000132967	.	.	downstream	upstream	min_support	.	.	.
LINC00486	TULP4	+/+	+/+	2:32916544	6:158501883	intron	CDS	translocation	0	0	0	489	1	low	.	.	\|Tub_family(100%)	.	.	ENSG00000230876	ENSG00000130338	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
LINC00486	TULP4	+/+	+/+	2:32916555	6:158501883	intron	CDS	translocation	0	0	0	489	1	low	.	.	\|Tub_family(100%)	.	.	ENSG00000230876	ENSG00000130338	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
FP236383.3	SLIT2	+/+	+/+	21:8444649	4:20252005	intron	5'UTR	translocation	0	0	0	59	0	low	.	.	\|EGF-like_domain(100%),Human_growth_factor-like_EGF(100%),Laminin_G_domain(100%),Leucine_rich_repeat(100%),Leucine_rich_repeat_C-terminal_domain(100%),Leucine_rich_repeat_N-terminal_domain(100%)	.	.	ENSG00000280441	ENSG00000145147	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	TULP4	+/+	+/+	2:32916550	6:158501883	intron	CDS	translocation	0	0	0	489	1	low	.	.	\|Tub_family(100%)	.	.	ENSG00000230876	ENSG00000130338	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
C17orf80	FP236383.3	+/+	+/+	17:73235862	21:8397181	CDS	intron	translocation	0	0	0	0	28	low	.	.	.	.	.	ENSG00000141219	ENSG00000280441	.	.	downstream	upstream	multimappers(1)	.	.	.
5_8S_rRNA(2091),FP236383.3(121619)	BIN3	./-	-/-	21:8259024	8:22621502	intergenic	CDS	translocation	0	0	0	430	5	low	.	.	.	.	.	.	ENSG00000147439	.	.	upstream	downstream	multimappers(1)	.	.	.
AC136443.1	NPIPA3	-/-	+/-	16:14727282	16:14723669	exon	intron	deletion/read-through/5'-5'	0	0	0	1	3	low	.	.	.	.	.	ENSG00000254609	ENSG00000224712	.	.	upstream	downstream	read_through(1)	.	.	.
IRAK1	FP236383.3	-/-	+/+	X:154019714	21:8397615	CDS	intron	translocation	1	0	0	8	10	low	.	.	Death_domain(8%)\|	.	.	ENSG00000184216	ENSG00000280441	.	.	upstream	upstream	min_support	.	.	.
LINC00486	TULP4	+/+	+/+	2:32916548	6:158501883	intron	CDS	translocation	0	0	0	489	1	low	.	.	\|Tub_family(100%)	.	.	ENSG00000230876	ENSG00000130338	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
CCDC88C	FP671120.3(1480),FP671120.7(2963)	-/-	./+	14:91294203	21:8251629	CDS	intergenic	translocation	0	0	0	6	2	low	.	.	HOOK_domain(100%)\|	.	.	ENSG00000015133	.	.	.	upstream	upstream	multimappers(1)	.	.	.
CR392039.1(1221),CR392039.3(7845)	UBR5	./+	-/-	21:8988651	8:102287449	intergenic	CDS	translocation	0	1	0	8	5	low	.	.	\|HECT-domain_(ubiquitin-transferase)(100%),Poly-adenylate_binding_protein__unique_domain(100%)	.	.	.	ENSG00000104517	.	.	downstream	downstream	min_support	.	.	.
LINC00486	TMC6	+/.	-/.	2:32916557	17:78117526	intron	CDS	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000141524	.	.	downstream	downstream	low_entropy	.	.	.
RPL23AP2	RPL23AP42	+/+	-/-	19:15611966	3:161429280	exon	exon	translocation	0	0	0	6	1	low	.	.	.	.	.	ENSG00000225067	ENSG00000234851	.	.	downstream	downstream	multimappers(1)	.	.	.
SLC24A5	PTPRC	+/-	+/+	15:48142274	1:198755997	CDS	CDS	translocation/3'-3'	0	1	0	1	1	low	.	.	.	.	.	ENSG00000188467	ENSG00000081237	.	.	upstream	upstream	min_support	.	.	.
5_8S_rRNA(3531),FP236383.3(120179)	RPS21	./+	+/+	21:8260464	20:62387377	intergenic	CDS	translocation	0	0	0	35	0	low	.	.	\|Ribosomal_protein_S21e_(85%)	.	.	.	ENSG00000171858	.	.	downstream	upstream	multimappers(1)	.	.	.
MYEF2	PTPRC	-/-	+/+	15:48142274	1:198755997	3'UTR	CDS	translocation	0	1	0	1	1	low	.	.	RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)\|	.	.	ENSG00000104177	ENSG00000081237	.	.	upstream	upstream	min_support	.	.	.
LINC00486	HLA-DRA	+/.	+/.	2:32916555	6:32442635	intron	CDS	translocation	0	0	0	489	21	low	.	.	.	.	.	ENSG00000230876	ENSG00000204287	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	NACA	+/.	-/.	2:32916461	12:56713604	intron	CDS	translocation	0	0	0	219	14	low	.	.	.	.	.	ENSG00000230876	ENSG00000196531	.	.	downstream	downstream	low_entropy	.	.	.
THRAP3	LINC00486	+/.	+/.	1:36291494	2:32916555	CDS	intron	translocation	0	0	0	6	489	low	.	.	.	.	.	ENSG00000054118	ENSG00000230876	.	.	upstream	downstream	low_entropy	.	.	.
LINC00486	SERINC1	+/+	-/-	2:32916556	6:122456598	intron	CDS	translocation	0	0	0	489	15	low	.	.	\|Serine_incorporator_(Serinc)(84%)	.	.	ENSG00000230876	ENSG00000111897	.	.	downstream	downstream	homopolymer(1)	.	.	.
RERE	TMSB4X	-/-	+/+	1:8613292	X:12976323	intron	CDS	translocation	0	1	0	0	81	low	.	.	BAH_domain(39%)\|Thymosin_beta-4_family(51%)	.	.	ENSG00000142599	ENSG00000205542	.	.	upstream	upstream	min_support	.	.	.
FP236383.3	CCT3	+/+	-/-	21:8392738	1:156318895	intron	CDS	translocation	0	0	0	10	5	low	.	.	\|TCP-1/cpn60_chaperonin_family(56%)	.	.	ENSG00000280441	ENSG00000163468	.	.	downstream	downstream	multimappers(1)	.	.	.
FP236383.4	SLC25A6	-/+	-/-	21:8393708	X:1389686	exon	CDS	translocation/3'-3'	0	0	0	31	37	low	.	.	\|Mitochondrial_carrier_protein(83%)	.	.	ENSG00000280614	ENSG00000169100	.	.	downstream	downstream	multimappers(1)	.	.	.
MTCH2	ZNF490	-/-	-/-	11:47638546	19:12625787	intron	intron	translocation	0	0	0	1	0	low	.	.	\|C2H2-type_zinc_finger(100%),KRAB_box(100%),Zinc_finger__C2H2_type(100%)	.	.	ENSG00000109919	ENSG00000188033	.	.	upstream	downstream	homopolymer(1)	.	.	.
FP236383.5	SLC25A6	-/+	-/-	21:8437918	X:1389686	exon	CDS	translocation/3'-3'	0	0	0	31	37	low	.	.	\|Mitochondrial_carrier_protein(83%)	.	.	ENSG00000281181	ENSG00000169100	.	.	downstream	downstream	multimappers(1)	.	.	.
LINC00486	SMPD4	+/.	-/.	2:32916372	2:130153782	intron	CDS	inversion	0	0	0	50	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000136699	.	.	downstream	downstream	mismatches	.	.	.
EVI2B	EVI2B	-/+	-/+	17:31305289	17:31305203	CDS	CDS	duplication/ITD	0	0	0	6	8	low	.	.	.	.	.	ENSG00000185862	ENSG00000185862	.	.	downstream	upstream	duplicates(1),hairpin(1)	.	.	.
LINC00486	SYNGR2	+/.	+/.	2:32916556	17:78170830	intron	CDS	translocation	0	0	0	489	11	low	.	.	.	.	.	ENSG00000230876	ENSG00000108639	.	.	downstream	upstream	low_entropy	.	.	.
SYNE2	SYNE2	+/+	+/+	14:64080555	14:64075940	CDS	exon	duplication	1	0	0	1	2	low	.	.	Calponin_homology_(CH)_domain(100%)\|Nuclear_envelope_localisation_domain(100%),Spectrin_repeat(100%)	.	.	ENSG00000054654	ENSG00000054654	.	.	downstream	upstream	intragenic_exonic	.	.	.
LINC00486	RARA	+/.	+/.	2:32916555	17:40331258	intron	CDS	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000131759	.	.	downstream	upstream	low_entropy	.	.	.
FP236383.3	FP236383.3	+/+	+/+	21:8442009	21:8441987	intron	intron	duplication/ITD	0	0	0	567	563	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	downstream	upstream	low_entropy(5)	.	.	.
FP236383.3	TUBA1C	+/+	+/+	21:8445864	12:49272411	intron	CDS	translocation	0	1	0	28	34	low	.	.	\|Tubulin/FtsZ_family__GTPase_domain(16%),Tubulin_C-terminal_domain(100%)	.	.	ENSG00000280441	ENSG00000167553	.	.	downstream	upstream	min_support	.	.	.
LINC00486	CTDSP1	+/.	+/.	2:32916556	2:218404306	intron	CDS	deletion	0	0	0	489	5	low	.	.	.	.	.	ENSG00000230876	ENSG00000144579	.	.	downstream	upstream	low_entropy	.	.	.
LINC01493(213584),AC021723.2(124724)	RTEL1	./+	+/+	11:38899907	20:63685559	intergenic	CDS	translocation	0	0	0	0	1	low	.	.	\|Helicase_C-terminal_domain(100%)	.	.	.	ENSG00000258366	.	.	downstream	upstream	mismatches(1)	.	.	.
HFM1	PNPLA2	-/-	+/+	1:91387360	11:824695	intron	CDS	translocation	0	1	0	2	4	low	.	.	.	.	.	ENSG00000162669	ENSG00000177666	.	.	upstream	upstream	min_support	.	.	.
NAA40	NAA40	+/+	+/+	11:63952773	11:63952416	CDS	CDS	duplication	1	0	0	2	1	low	.	.	Acetyltransferase_(GNAT)_family(54%)\|Acetyltransferase_(GNAT)_family(100%)	.	.	ENSG00000110583	ENSG00000110583	.	.	downstream	upstream	min_support	.	.	.
AC136619.1	AC138969.1	-/-	+/-	16:16394912	16:16347878	exon	intron	deletion/read-through/5'-5'	0	0	0	2	2	low	.	.	.	.	.	ENSG00000261181	ENSG00000183889	.	.	upstream	downstream	multimappers(1)	.	.	.
AOX1	DHX34	+/+	+/+	2:200651635	19:47353001	intron	5'UTR	translocation	0	0	0	0	17	low	.	.	2Fe-2S_iron-sulfur_cluster_binding_domain(100%),Aldehyde_oxidase_and_xanthine_dehydrogenase__a/b_hammerhead_domain(100%),CO_dehydrogenase_flavoprotein_C-terminal_domain(100%),FAD_binding_domain_in_molybdopterin_dehydrogenase(100%),Molybdopterin_cofactor-binding_domain(58%),[2Fe-2S]_binding_domain(100%)\|Helicase_associated_domain_(HA2)(100%),Helicase_conserved_C-terminal_domain(100%),Oligonucleotide/oligosaccharide-binding_(OB)-fold(100%)	.	.	ENSG00000138356	ENSG00000134815	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
LINC00486	VIM	+/.	+/.	2:32916556	10:17229847	intron	CDS	translocation	0	0	0	489	9	low	.	.	.	.	.	ENSG00000230876	ENSG00000026025	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	GPAT2	+/.	-/.	2:32916556	2:96032353	intron	CDS	inversion	0	0	0	489	6	low	.	.	.	.	.	ENSG00000230876	ENSG00000186281	.	.	downstream	downstream	low_entropy	.	.	.
LINC00486	VIM	+/.	+/.	2:32916554	10:17229847	intron	CDS	translocation	0	0	0	489	9	low	.	.	.	.	.	ENSG00000230876	ENSG00000026025	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	VIM	+/.	+/.	2:32916553	10:17229847	intron	CDS	translocation	0	0	0	489	9	low	.	.	.	.	.	ENSG00000230876	ENSG00000026025	.	.	downstream	upstream	low_entropy	.	.	.
HLA-C	ARAP2	-/-	-/+	6:31271073	4:36132345	CDS/splice-site	intron	translocation/5'-5'	0	0	0	74	0	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%)\|	.	.	ENSG00000204525	ENSG00000047365	.	.	upstream	upstream	mismatches(1)	.	.	.
NRCAM	PARP12	-/+	-/-	7:108456470	7:140046917	intron	CDS	inversion/3'-3'	0	0	0	0	14	low	.	.	\|Poly(ADP-ribose)_polymerase_catalytic_domain(100%),WWE_domain(100%)	.	.	ENSG00000091129	ENSG00000059378	.	.	downstream	downstream	mismatches(1)	.	.	.
CSE1L	FP236383.3	+/+	+/+	20:49072399	21:8441835	CDS	intron	translocation	1	0	0	5	42	low	.	.	Cse1(37%),Importin-beta_N-terminal_domain(100%)\|	.	.	ENSG00000124207	ENSG00000280441	.	.	downstream	upstream	min_support	.	.	.
FP236383.3	TRRAP	+/+	+/+	21:8437538	7:98949509	intron	CDS	translocation	0	0	0	13	8	low	.	.	\|FAT_domain(100%),Phosphatidylinositol_3-_and_4-kinase(100%)	.	.	ENSG00000280441	ENSG00000196367	.	.	downstream	upstream	multimappers(1)	.	.	.
FP236383.3	TRRAP	+/+	+/+	21:8393328	7:98949509	intron	CDS	translocation	0	0	0	12	8	low	.	.	\|FAT_domain(100%),Phosphatidylinositol_3-_and_4-kinase(100%)	.	.	ENSG00000280441	ENSG00000196367	.	.	downstream	upstream	multimappers(1)	.	.	.
FP671120.4	TRRAP	+/+	+/+	21:8210293	7:98949509	intron	CDS	translocation	0	0	0	11	8	low	.	.	\|FAT_domain(100%),Phosphatidylinositol_3-_and_4-kinase(100%)	.	.	ENSG00000278996	ENSG00000196367	.	.	downstream	upstream	multimappers(1)	.	.	.
ACTG1	ACTBP14	-/-	+/+	17:81512006	10:69022944	CDS	exon	translocation	0	0	0	53	0	low	.	.	Actin(22%)\|	.	.	ENSG00000184009	ENSG00000229001	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.3(4352),FP671120.7(91)	TRRAP	./+	+/+	21:8254501	7:98949509	intergenic	CDS	translocation	0	0	0	5	8	low	.	.	\|FAT_domain(100%),Phosphatidylinositol_3-_and_4-kinase(100%)	.	.	.	ENSG00000196367	.	.	downstream	upstream	multimappers(1)	.	.	.
NTRK1	LINC00486	+/.	+/.	1:156874941	2:32916558	CDS	intron	translocation	0	0	0	7	489	low	.	.	.	.	.	ENSG00000198400	ENSG00000230876	.	.	upstream	downstream	mismatches	.	.	.
NTRK1	LINC00486	+/.	+/.	1:156874941	2:32916556	CDS	intron	translocation	0	0	0	7	489	low	.	.	.	.	.	ENSG00000198400	ENSG00000230876	.	.	upstream	downstream	mismatches	.	.	.
HLA-C	RNA5-8SN1	-/-	+/+	6:31271232	21:8439901	CDS	exon	translocation	0	0	0	36	4	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(72%)\|	.	.	ENSG00000204525	ENSG00000278189	.	.	upstream	upstream	mismatches	.	.	.
NTRK1	LINC00486	+/.	+/.	1:156874941	2:32916554	CDS	intron	translocation	0	0	0	7	489	low	.	.	.	.	.	ENSG00000198400	ENSG00000230876	.	.	upstream	downstream	mismatches	.	.	.
NTRK1	LINC00486	+/.	+/.	1:156874941	2:32916553	CDS	intron	translocation	0	0	0	7	489	low	.	.	.	.	.	ENSG00000198400	ENSG00000230876	.	.	upstream	downstream	mismatches	.	.	.
LMBR1(6793),AC006357.1(44712)	CCT7	./-	+/+	7:156900009	2:73244035	intergenic	CDS	translocation	0	0	0	0	0	low	.	.	\|TCP-1/cpn60_chaperonin_family(76%)	.	.	.	ENSG00000135624	.	.	upstream	upstream	mismatches(1)	.	.	.
GLRA3	RPS10-NUDT3	-/+	-/-	4:174662660	6:34425085	intron	CDS	translocation/3'-3'	0	0	0	0	11	low	.	.	\|NUDIX_domain(100%),Plectin/S10_domain(54%)	.	.	ENSG00000145451	ENSG00000270800	.	.	downstream	downstream	mismatches(1)	.	.	.
RASA4DP	RASA4	-/-	-/-	7:102682085	7:102582868	exon	CDS	deletion/read-through	0	0	0	4	6	low	.	.	.	.	.	ENSG00000233297	ENSG00000105808	.	.	upstream	downstream	multimappers(1)	.	.	.
FP236383.3	AP005242.2(4112),AP005242.3(46381)	+/+	./+	21:8444649	18:15010464	intron	intergenic	translocation	0	0	0	59	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	downstream	upstream	mismatches(1)	.	.	.
GLRA3	RPS10	-/+	-/-	4:174662660	6:34425085	intron	CDS	translocation/3'-3'	0	0	0	0	11	low	.	.	\|Plectin/S10_domain(54%)	.	.	ENSG00000145451	ENSG00000124614	.	.	downstream	downstream	mismatches(1)	.	.	.
FP671120.4	DCTN1	+/-	-/-	21:8216113	2:74369468	intron	CDS	translocation/3'-3'	0	0	0	60	4	low	.	.	\|Dynein_associated_protein_(100%)	.	.	ENSG00000278996	ENSG00000204843	.	.	upstream	downstream	mismatches(1)	.	.	.
SCAF4	SCAF4	-/-	-/-	21:31694813	21:31694851	CDS/splice-site	CDS	duplication/ITD	0	0	0	3	3	low	.	.	CID_domain(100%)\|RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)	.	.	ENSG00000156304	ENSG00000156304	.	.	upstream	downstream	hairpin(1),inconsistently_clipped(1)	.	.	.
FP671120.6	NLRC5	-/+	+/+	21:8211124	16:57034235	exon	CDS	translocation/3'-3'	0	1	0	26	4	low	.	.	\|Leucine_Rich_repeat(99%)	.	.	ENSG00000280800	ENSG00000140853	.	.	downstream	upstream	min_support	.	.	.
MDN1	USP48	-/+	-/-	6:89734061	1:21729803	intron	CDS	translocation/3'-3'	0	1	0	0	5	low	.	.	\|Ubiquitin_carboxyl-terminal_hydrolase(5%)	.	.	ENSG00000112159	ENSG00000090686	.	.	downstream	downstream	min_support	.	.	.
HSP90AB3P	HSP90AB1	+/+	+/+	4:87892889	6:44250586	exon	CDS	translocation	0	0	0	1	0	low	.	.	\|Hsp90_protein(75%)	.	.	ENSG00000183199	ENSG00000096384	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	DNA2	+/+	-/-	2:32916484	10:68471830	intron	CDS	translocation	0	0	0	215	1	low	.	.	\|AAA_domain(100%),DNA_replication_factor_Dna2(100%)	.	.	ENSG00000230876	ENSG00000138346	.	.	downstream	downstream	mismatches(1)	.	.	.
DPYD	CALR	-/+	+/+	1:97501129	19:12939137	intron	CDS	translocation/3'-3'	0	0	0	0	15	low	.	.	\|Calreticulin_family(96%)	.	.	ENSG00000188641	ENSG00000179218	.	.	downstream	upstream	mismatches(1)	.	.	.
TTF2	MBD5	+/+	+/+	1:117101562	2:148476645	3'UTR/splice-site	intron	translocation	0	0	0	33	0	low	.	.	GRF_zinc_finger(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%)\|PWWP_domain(100%)	.	.	ENSG00000116830	ENSG00000204406	.	.	downstream	upstream	mismatches(1)	.	.	.
PRR19	CALR	+/-	+/+	19:42307352	19:12939136	intron	CDS/splice-site	inversion/3'-3'	0	0	0	0	15	low	.	.	\|Calreticulin_family(97%)	.	.	ENSG00000188368	ENSG00000179218	.	.	upstream	upstream	mismatches(1)	.	.	.
EYA4	CALR	+/+	+/+	6:133329427	19:12939136	intron	CDS/splice-site	translocation	0	0	0	0	15	low	.	.	\|Calreticulin_family(97%)	.	.	ENSG00000112319	ENSG00000179218	.	.	downstream	upstream	mismatches(1)	.	.	.
AC122683.1(3189),HMGN2P24(90450)	HSPH1	./+	-/-	3:40608616	13:31145707	intergenic	CDS	translocation	0	0	0	0	2	low	.	.	\|Hsp70_protein(31%)	.	.	.	ENSG00000120694	.	.	downstream	downstream	mismatches(1)	.	.	.
CCND2	AC008012.1	+/+	+/+	12:4276107	12:4274221	CDS	CDS	duplication	0	1	0	14	0	low	.	.	Cyclin__N-terminal_domain(58%)\|	.	.	ENSG00000118971	ENSG00000285901	.	.	downstream	upstream	intragenic_exonic	.	.	.
SMIM10L1	TAS2R42(3134),AC244131.1(6004)	+/+	./+	12:11171551	12:11190071	CDS	intergenic	deletion/read-through	0	1	0	2	0	low	.	.	Domain_of_unknown_function_(DUF4560)(95%)\|	.	.	ENSG00000256537	.	.	.	downstream	upstream	min_support	.	.	.
MAPKAPK3	CCDC88A	+/+	-/-	3:50617123	2:55334692	intron	CDS/splice-site	translocation	0	0	0	0	3	low	.	.	.	.	.	ENSG00000114738	ENSG00000115355	.	.	downstream	downstream	mismatches(1)	.	.	.
TNR	CCT7	-/-	+/+	1:175612839	2:73244036	intron	CDS	translocation	0	0	0	0	0	low	.	.	\|TCP-1/cpn60_chaperonin_family(76%)	.	.	ENSG00000116147	ENSG00000135624	.	.	upstream	upstream	mismatches(1)	.	.	.
AL358472.5	DENND4B	+/-	-/-	1:153934812	1:153934802	exon	CDS	deletion/read-through/3'-3'	0	0	0	4	4	low	.	.	.	.	.	ENSG00000284738	ENSG00000198837	.	.	upstream	downstream	read_through(2)	.	.	.
EGFR	SEPTIN14	+/+	-/-	7:55200413	7:55796092	CDS/splice-site	CDS/splice-site	inversion	0	1	0	0	1	low	.	.	Furin-like_cysteine_rich_region(100%),Growth_factor_receptor_domain_IV(100%),Protein_kinase_domain(100%),Receptor_L_domain(100%)\|	.	.	ENSG00000146648	ENSG00000154997	.	.	downstream	downstream	min_support	.	.	.
HSPA9	HSPA9	-/-	-/-	5:138571005	5:138571049	CDS	CDS	duplication/ITD	0	0	0	6	6	low	.	.	Hsp70_protein(9%)\|Hsp70_protein(92%),MreB/Mbl_protein(100%)	.	.	ENSG00000113013	ENSG00000113013	.	.	upstream	downstream	hairpin(1)	.	.	.
DENND4B	DENND4B	-/-	-/-	1:153934812	1:153934802	CDS	CDS	deletion/read-through	0	0	0	4	4	low	.	.	DENN_(AEX-3)_domain(100%),dDENN_domain(100%),uDENN_domain(100%)\|	.	.	ENSG00000198837	ENSG00000198837	.	.	upstream	downstream	read_through(2)	.	.	.
LINC00486	5_8S_rRNA(2003),FP236383.3(121707)	+/.	./.	2:32916556	21:8258936	intron	intergenic	translocation	0	0	0	489	466	low	.	.	.	.	.	ENSG00000230876	.	.	.	downstream	upstream	low_entropy	.	.	.
AL358472.5	DENND4B	+/-	-/-	1:153934794	1:153934802	exon	CDS	duplication/3'-3'	0	0	0	4	4	low	.	.	.	.	.	ENSG00000284738	ENSG00000198837	.	.	upstream	downstream	low_entropy(1)	.	.	.
LINC00486	TBL3	+/.	+/.	2:32916557	16:1977246	intron	CDS	translocation	0	0	0	489	1	low	.	.	.	.	.	ENSG00000230876	ENSG00000183751	.	.	downstream	upstream	low_entropy	.	.	.
FP671120.4	LCOR	+/+	+/+	21:8214235	10:96982090	intron	CDS	translocation	0	1	0	28	4	low	.	.	\|Domain_of_unknown_function_(DUF4553)(100%)	.	.	ENSG00000278996	ENSG00000196233	.	.	downstream	upstream	min_support	.	.	.
C17orf80	FP236383.3	+/+	+/+	17:73235862	21:8441401	CDS	intron	translocation	0	0	0	0	30	low	.	.	.	.	.	ENSG00000141219	ENSG00000280441	.	.	downstream	upstream	multimappers(1)	.	.	.
AC079150.1(111989),LINC01850(17553)	HLA-DPA1	./-	-/-	2:153320152	6:33069885	intergenic	CDS/splice-site	translocation	0	0	0	0	50	low	.	.	\|Class_II_histocompatibility_antigen__alpha_domain(100%),Immunoglobulin_C1-set_domain(100%)	.	.	.	ENSG00000231389	.	.	upstream	downstream	mismatches(1)	.	.	.
GPATCH8	FP236383.3	-/-	+/+	17:44397883	21:8398648	CDS	intron	translocation	0	0	1	4	14	low	.	.	G-patch_domain(100%),Zinc-finger_double-stranded_RNA-binding(100%)\|	.	.	ENSG00000186566	ENSG00000280441	.	.	upstream	upstream	min_support,multimappers(1)	.	.	.
OR13J1(1416),NDUFA5P4(2793)	NONO	./-	+/+	9:35872017	X:71298688	intergenic	exon	translocation	0	0	0	0	7	low	.	.	.	.	.	.	ENSG00000147140	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00486	5_8S_rRNA(2072),FP236383.3(121638)	+/.	./.	2:32916556	21:8259005	intron	intergenic	translocation	0	0	0	489	491	low	.	.	.	.	.	ENSG00000230876	.	.	.	downstream	upstream	duplicates	.	.	.
RRP1	RRP1	+/+	+/+	21:43803760	21:43802346	CDS	CDS	duplication	1	0	0	2	2	low	.	.	Nucleolar_protein_Nop52(100%)\|	.	.	ENSG00000160214	ENSG00000160214	.	.	downstream	upstream	intragenic_exonic	.	.	.
LINC00486	TULP4	+/+	+/+	2:32916553	6:158501883	intron	CDS	translocation	0	0	0	489	1	low	.	.	\|Tub_family(100%)	.	.	ENSG00000230876	ENSG00000130338	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
LINC00486	NFE2L1	+/.	+/.	2:32916555	17:48059483	intron	CDS	translocation	0	0	0	489	8	low	.	.	.	.	.	ENSG00000230876	ENSG00000082641	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	RPL10	+/.	+/.	2:32916562	X:154400503	intron	CDS	translocation	0	0	0	480	42	low	.	.	.	.	.	ENSG00000230876	ENSG00000147403	.	.	downstream	upstream	mismatches	.	.	.
TADA3	FP236383.5	-/-	-/+	3:9789933	21:8438154	CDS	exon	translocation/5'-5'	0	0	0	9	27	low	.	.	.	.	.	ENSG00000171148	ENSG00000281181	.	.	upstream	upstream	multimappers(1)	.	.	.
LINC00486	KIF18A	+/.	-/.	2:32916550	11:28069082	intron	intron	translocation	0	0	0	489	13	low	.	.	.	.	.	ENSG00000230876	ENSG00000121621	.	.	downstream	downstream	mismatches	.	.	.
TADA3	FP236383.4	-/-	-/+	3:9789933	21:8393944	CDS	exon	translocation/5'-5'	0	0	0	9	27	low	.	.	.	.	.	ENSG00000171148	ENSG00000280614	.	.	upstream	upstream	multimappers(1)	.	.	.
FP236383.4	CENPF	-/+	+/+	21:8393571	1:214630618	exon	CDS	translocation/3'-3'	0	0	0	25	6	low	.	.	\|Leucine-rich_repeats_of_kinetochore_protein_Cenp-F/LEK1(100%),Rb-binding_domain_of_kinetochore_protein_Cenp-F/LEK1(100%)	.	.	ENSG00000280614	ENSG00000117724	.	.	downstream	upstream	multimappers(1)	.	.	.
TADA3	FP671120.6	-/-	-/+	3:9789933	21:8210909	CDS	exon	translocation/5'-5'	0	0	0	9	25	low	.	.	.	.	.	ENSG00000171148	ENSG00000280800	.	.	upstream	upstream	multimappers(1)	.	.	.
LINC00486	5_8S_rRNA(2015),FP236383.3(121695)	+/.	./.	2:32916556	21:8258948	intron	intergenic	translocation	0	0	0	489	511	low	.	.	.	.	.	ENSG00000230876	.	.	.	downstream	upstream	low_entropy	.	.	.
AC007786.4	STARD9	+/-	+/+	19:29269923	15:42688913	intron	CDS	translocation/3'-3'	0	0	0	0	1	low	.	.	\|START_domain(100%)	.	.	ENSG00000287272	ENSG00000159433	.	.	upstream	upstream	homopolymer(1)	.	.	.
POU3F1	GRHL3	-/-	+/+	1:38045412	1:24341892	CDS	intron	inversion	1	0	0	1	0	low	.	.	Homeodomain(100%),Pou_domain_-_N-terminal_to_homeobox_domain(100%)\|CP2_transcription_factor(36%)	.	.	ENSG00000185668	ENSG00000158055	.	.	upstream	upstream	min_support	.	.	.
RPL14P1	SEC22B(7958),AC244669.2(12607)	+/+	./-	12:62965818	1:120184478	exon	intergenic	translocation	0	0	0	20	0	low	.	.	.	.	.	ENSG00000139239	.	.	.	downstream	downstream	homopolymer(1)	.	.	.
THRAP3	THRAP3	+/+	+/+	1:36301058	1:36300990	CDS	CDS	duplication/ITD	0	0	0	6	6	low	.	.	THRAP3/BCLAF1_family(100%)\|	.	.	ENSG00000054118	ENSG00000054118	.	.	downstream	upstream	hairpin(1)	.	.	.
FP236383.3	FP671120.4	+/+	+/+	21:8442052	21:8214788	intron	intron	duplication	0	0	0	580	171	low	.	.	.	.	.	ENSG00000280441	ENSG00000278996	.	.	downstream	upstream	homopolymer(2)	.	.	.
MKI67	FP236383.3	-/-	+/+	10:128108125	21:8399112	CDS	intron	translocation	0	0	0	9	73	low	.	.	FHA_domain(100%),KI67R_(NUC007)_repeat(12%),Protein_phosphatase_1_binding(100%)\|	.	.	ENSG00000148773	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
SYNPO2	SEC24D	+/-	-/-	4:119004377	4:118752934	intron	intron	deletion/read-through/3'-3'	0	1	0	0	2	low	.	.	\|Gelsolin_repeat(100%),Sec23/Sec24_beta-sandwich_domain(100%),Sec23/Sec24_helical_domain(100%),Sec23/Sec24_trunk_domain(84%)	.	.	ENSG00000172403	ENSG00000150961	.	.	upstream	downstream	min_support	.	.	.
HCLS1	HCLS1	-/-	-/-	3:121632447	3:121632458	CDS	CDS	duplication/ITD	0	0	0	7	1	low	.	.	Repeat_in_HS1/Cortactin(100%)\|SH3_domain(100%)	.	.	ENSG00000180353	ENSG00000180353	.	.	upstream	downstream	hairpin(3),inconsistently_clipped(2)	.	.	.
CCZ1B	CCZ1B	-/-	-/-	7:6800948	7:6801523	CDS/splice-site	CDS/splice-site	duplication/non-canonical_splicing	0	0	0	4	3	low	.	.	First_Longin_domain_of_INTU__CCZ1_and_HPS4(100%),Intu_longin-like_domain_2(100%),Intu_longin-like_domain_3(94%)\|Intu_longin-like_domain_3(100%)	.	.	ENSG00000146574	ENSG00000146574	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	MPP5	+/.	+/.	2:32916556	14:67317476	intron	CDS	translocation	0	0	0	489	0	low	.	.	.	.	.	ENSG00000230876	ENSG00000072415	.	.	downstream	upstream	low_entropy	.	.	.
FP671120.4	FP236383.3	+/+	+/+	21:8218974	21:8441913	intron	intron	deletion/read-through	0	0	0	2	342	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	MPP5	+/.	+/.	2:32916555	14:67317476	intron	CDS	translocation	0	0	0	489	0	low	.	.	.	.	.	ENSG00000230876	ENSG00000072415	.	.	downstream	upstream	low_entropy	.	.	.
GTF3C2	LINC00486	-/.	+/.	2:27326880	2:32916556	CDS	intron	inversion	0	0	0	4	489	low	.	.	.	.	.	ENSG00000115207	ENSG00000230876	.	.	downstream	downstream	low_entropy	.	.	.
EVI2B	EVI2B	-/-	-/-	17:31305223	17:31305290	CDS	CDS	duplication/ITD	0	0	0	7	6	low	.	.	.	.	.	ENSG00000185862	ENSG00000185862	.	.	upstream	downstream	hairpin(1),inconsistently_clipped(1)	.	.	.
LINC00486	CANX	+/+	+/+	2:32916544	5:179705762	intron	CDS	translocation	0	0	0	489	1	low	.	.	\|Calreticulin_family(100%)	.	.	ENSG00000230876	ENSG00000127022	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
STRADA	PSMC5	-/+	+/+	17:63704635	17:63830434	3'UTR	CDS	deletion/read-through/3'-3'	0	0	0	1	5	low	.	.	\|AAA+_lid_domain(100%),ATPase_family_associated_with_various_cellular_activities_(AAA)(100%)	.	.	ENSG00000266173	ENSG00000087191	.	.	downstream	upstream	low_entropy(1)	.	.	.
PDHX(66989),AL356215.1(45075)	HLA-DPA1	./+	-/-	11:35087580	6:33069885	intergenic	CDS/splice-site	translocation	0	0	0	0	50	low	.	.	\|Class_II_histocompatibility_antigen__alpha_domain(100%),Immunoglobulin_C1-set_domain(100%)	.	.	.	ENSG00000231389	.	.	downstream	downstream	mismatches(1)	.	.	.
EVI2B	AC134669.1	-/-	-/-	17:31305223	17:31305290	CDS	3'UTR	duplication	0	0	0	7	6	low	.	.	.	.	.	ENSG00000185862	ENSG00000265118	.	.	upstream	downstream	hairpin(1),inconsistently_clipped(1)	.	.	.
LINC00486	PHKG2	+/.	+/.	2:32916555	16:30757210	intron	3'UTR	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000156873	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	FP671120.4	+/.	+/.	2:32916555	21:8218700	intron	intron	translocation	0	0	0	489	39	low	.	.	.	.	.	ENSG00000230876	ENSG00000278996	.	.	downstream	upstream	low_entropy	.	.	.
FP236383.3	DAZAP1	+/+	+/-	21:8400415	19:1407637	intron	5'UTR	translocation/5'-5'	0	0	0	105	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000071626	.	.	downstream	downstream	mismatches(1)	.	.	.
TTF2	AL161725.1	+/+	-/+	1:117101562	9:468633	3'UTR/splice-site	intron	translocation/5'-5'	0	0	0	33	0	low	.	.	GRF_zinc_finger(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%)\|	.	.	ENSG00000116830	ENSG00000227155	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	DDX23	+/.	-/.	2:32916556	12:48845684	intron	CDS	translocation	0	0	0	489	6	low	.	.	.	.	.	ENSG00000230876	ENSG00000174243	.	.	downstream	downstream	low_entropy	.	.	.
TTF2	MTND2P8(290002),KRT18P24(3667)	+/+	./+	1:117101562	9:79032746	3'UTR/splice-site	intergenic	translocation	0	0	0	33	0	low	.	.	GRF_zinc_finger(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%)\|	.	.	ENSG00000116830	.	.	.	downstream	upstream	mismatches(1)	.	.	.
C1orf43	AC080068.1(17539),RN7SL542P(169185)	-/-	./-	1:154207541	7:21046352	CDS	intergenic	translocation	0	0	0	10	0	low	.	.	NICE-3_protein(100%)\|	.	.	ENSG00000143612	.	.	.	upstream	downstream	mismatches(1)	.	.	.
TTF2	USP24	+/+	-/-	1:117101562	1:55146601	3'UTR/splice-site	intron	inversion	0	0	0	33	0	low	.	.	GRF_zinc_finger(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%)\|Domain_of_unknown_function_(DUF3517)(100%),Ubiquitin_carboxyl-terminal_hydrolase(100%)	.	.	ENSG00000116830	ENSG00000162402	.	.	downstream	downstream	mismatches(1)	.	.	.
GATAD2A	FP236383.3	+/+	+/+	19:19496062	21:8397158	CDS	intron	translocation	0	0	0	3	19	low	.	.	Coiled-coil_and_interaction_region_of_P66A_and_P66B_with_MBD2(100%)\|	.	.	ENSG00000167491	ENSG00000280441	.	.	downstream	upstream	multimappers(1)	.	.	.
DDX5	FP236383.3	-/-	+/+	17:64501927	21:8443655	3'UTR	intron	translocation	0	0	0	6	14	low	.	.	DEAD/DEAH_box_helicase(100%),Helicase_conserved_C-terminal_domain(72%)\|	.	.	ENSG00000108654	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
TTF2	GMDS	+/+	-/-	1:117101562	6:1772592	3'UTR/splice-site	intron	translocation	0	0	0	33	0	low	.	.	GRF_zinc_finger(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%)\|GDP-mannose_4_6_dehydratase(30%)	.	.	ENSG00000116830	ENSG00000112699	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	RNF213	+/.	+/.	2:32916558	17:80327842	intron	CDS	translocation	0	0	0	489	6	low	.	.	.	.	.	ENSG00000230876	ENSG00000173821	.	.	downstream	upstream	low_entropy	.	.	.
TTF2	IL3RA	+/+	+/+	1:117101562	X:1358209	3'UTR/splice-site	intron	translocation	0	0	0	33	0	low	.	.	GRF_zinc_finger(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%)\|	.	.	ENSG00000116830	ENSG00000185291	.	.	downstream	upstream	mismatches(1)	.	.	.
GATAD2A	FP236383.3	+/+	+/+	19:19496062	21:8441378	CDS	intron	translocation	0	0	0	3	21	low	.	.	Coiled-coil_and_interaction_region_of_P66A_and_P66B_with_MBD2(100%)\|	.	.	ENSG00000167491	ENSG00000280441	.	.	downstream	upstream	multimappers(1)	.	.	.
KAT6B	CHN2	+/+	+/-	10:75028944	7:29302307	CDS	intron	translocation/5'-5'	0	0	0	1	0	low	.	.	MOZ/SAS_family(100%),MYST_family_zinc_finger_domain(100%),PHD-finger(100%),linker_histone_H1_and_H5_family(100%)\|	.	.	ENSG00000156650	ENSG00000106069	.	.	downstream	downstream	mismatches(1)	.	.	.
FP236383.3	DEPDC5	+/+	+/+	21:8394541	22:31870613	intron	CDS	translocation	0	0	0	3	0	low	.	.	\|Domain_found_in_Dishevelled__Egl-10__and_Pleckstrin_(DEP)(100%)	.	.	ENSG00000280441	ENSG00000100150	.	.	downstream	upstream	multimappers(1)	.	.	.
LINC00486	CANX	+/.	+/.	2:32916550	5:179708336	intron	CDS	translocation	0	0	0	489	21	low	.	.	.	.	.	ENSG00000230876	ENSG00000127022	.	.	downstream	upstream	mismatches	.	.	.
TTF2	RXRG(9068),LRRC52-AS1(22415)	+/+	./+	1:117101562	1:165454423	3'UTR/splice-site	intergenic	deletion	0	0	0	33	0	low	.	.	GRF_zinc_finger(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%)\|	.	.	ENSG00000116830	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	ZNF518B	+/+	-/-	21:8444005	4:10444450	intron	CDS	translocation	0	0	1	15	4	low	.	.	.	.	.	ENSG00000280441	ENSG00000178163	.	.	downstream	downstream	min_support,multimappers(1)	.	.	.
LINC00486	HLA-DRA	+/.	+/.	2:32916556	6:32442635	intron	CDS	translocation	0	0	0	489	21	low	.	.	.	.	.	ENSG00000230876	ENSG00000204287	.	.	downstream	upstream	low_entropy	.	.	.
TTF2	TRPM3	+/+	-/-	1:117101562	9:70963425	3'UTR/splice-site	intron	translocation	0	0	0	33	0	low	.	.	GRF_zinc_finger(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%)\|Ion_transport_protein(100%),SLOG_in_TRPM(100%),Tetramerisation_domain_of_TRPM(100%)	.	.	ENSG00000116830	ENSG00000083067	.	.	downstream	downstream	mismatches(1)	.	.	.
TTF2	LINC01456	+/+	-/-	1:117101562	X:18029881	3'UTR/splice-site	intron	translocation	0	0	0	33	0	low	.	.	GRF_zinc_finger(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%)\|	.	.	ENSG00000116830	ENSG00000225882	.	.	downstream	downstream	mismatches(1)	.	.	.
RCC2	LINC00486	-/.	+/.	1:17416577	2:32916549	CDS	intron	translocation	0	0	0	11	489	low	.	.	.	.	.	ENSG00000179051	ENSG00000230876	.	.	downstream	downstream	low_entropy	.	.	.
TTF2	UPF3A	+/+	+/-	1:117101562	13:114294413	3'UTR/splice-site	intron	translocation/5'-5'	0	0	0	33	0	low	.	.	GRF_zinc_finger(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%)\|	.	.	ENSG00000116830	ENSG00000169062	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	FP671120.4	+/.	+/.	2:32916556	21:8214776	intron	intron	translocation	0	0	0	489	165	low	.	.	.	.	.	ENSG00000230876	ENSG00000278996	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	FP671120.4	+/.	+/.	2:32916556	21:8215649	intron	intron	translocation	0	0	0	489	21	low	.	.	.	.	.	ENSG00000230876	ENSG00000278996	.	.	downstream	upstream	low_entropy	.	.	.
TTF2	BOLA2P3(15339),CASC15(46463)	+/+	./-	1:117101562	6:21617722	3'UTR/splice-site	intergenic	translocation	0	0	0	33	0	low	.	.	GRF_zinc_finger(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%)\|	.	.	ENSG00000116830	.	.	.	downstream	downstream	mismatches(1)	.	.	.
TTF2	AC007402.1	+/+	+/+	1:117101562	2:51709448	3'UTR/splice-site	intron	translocation	0	0	0	33	0	low	.	.	GRF_zinc_finger(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%)\|	.	.	ENSG00000116830	ENSG00000231918	.	.	downstream	upstream	mismatches(1)	.	.	.
TTF2	RNU6-326P(13251),CCDC201(3003)	+/+	./+	1:117101562	7:45856991	3'UTR/splice-site	intergenic	translocation	0	0	0	33	0	low	.	.	GRF_zinc_finger(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%)\|	.	.	ENSG00000116830	.	.	.	downstream	upstream	mismatches(1)	.	.	.
TTF2	HELLPAR	+/+	+/+	1:117101562	12:102401113	3'UTR/splice-site	exon	translocation	0	0	0	33	0	low	.	.	GRF_zinc_finger(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%)\|	.	.	ENSG00000116830	ENSG00000281344	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	DHX30	+/.	+/.	2:32916555	3:47847908	intron	CDS	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000132153	.	.	downstream	upstream	low_entropy	.	.	.
TTF2	SEPTIN7(7406),RNU6-1085P(15647)	+/+	./-	1:117101562	7:35914511	3'UTR/splice-site	intergenic	translocation	0	0	0	33	0	low	.	.	GRF_zinc_finger(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%)\|	.	.	ENSG00000116830	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	AP5Z1	+/.	+/.	2:32916556	7:4784309	intron	CDS	translocation	0	0	0	489	4	low	.	.	.	.	.	ENSG00000230876	ENSG00000242802	.	.	downstream	upstream	low_entropy	.	.	.
RPL14	CSMD1	+/+	-/+	3:40462078	8:3496776	CDS	intron	translocation/5'-5'	0	0	0	66	0	low	.	.	Ribosomal_protein_L14(100%)\|	.	.	ENSG00000188846	ENSG00000183117	.	.	downstream	upstream	homopolymer(1)	.	.	.
TTF2	AC093392.1(1181),RNU6-1335P(15449)	+/+	./-	1:117101562	7:56324782	3'UTR/splice-site	intergenic	translocation	0	0	0	33	0	low	.	.	GRF_zinc_finger(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%)\|	.	.	ENSG00000116830	.	.	.	downstream	downstream	mismatches(1)	.	.	.
TTF2	AC010132.1(20578),AC010132.4(36256)	+/+	./+	1:117101562	7:42865016	3'UTR/splice-site	intergenic	translocation	0	0	0	33	0	low	.	.	GRF_zinc_finger(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%)\|	.	.	ENSG00000116830	.	.	.	downstream	upstream	mismatches(1)	.	.	.
TTF2	TMEM132B	+/+	+/+	1:117101562	12:125264254	3'UTR/splice-site	intron	translocation	0	0	0	33	0	low	.	.	GRF_zinc_finger(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%)\|Mature_oligodendrocyte_transmembrane_protein__TMEM132D__C-term(100%),Mature_oligodendrocyte_transmembrane_protein__TMEM132D__N-term(100%),Transmembrane_protein_family_132(100%)	.	.	ENSG00000116830	ENSG00000139364	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	H2AC18	+/+	-/-	21:8394501	1:149842668	intron	CDS	translocation	0	0	0	8	70	low	.	.	\|C-terminus_of_histone_H2A(100%),Core_histone_H2A/H2B/H3/H4(92%)	.	.	ENSG00000280441	ENSG00000203812	.	.	downstream	downstream	multimappers(1)	.	.	.
TTF2	AL158151.3	+/+	+/-	1:117101562	9:129219962	3'UTR/splice-site	intron	translocation/5'-5'	0	0	0	33	0	low	.	.	GRF_zinc_finger(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%)\|	.	.	ENSG00000116830	ENSG00000235007	.	.	downstream	downstream	mismatches(1)	.	.	.
HLA-A	AC093821.1	+/+	+/-	6:29943541	4:123516534	CDS/splice-site	intron	translocation/5'-5'	0	0	0	8	0	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%)\|	.	.	ENSG00000206503	ENSG00000249125	.	.	downstream	downstream	mismatches(1)	.	.	.
TTF2	AL158151.1	+/+	+/-	1:117101562	9:129219962	3'UTR/splice-site	intron	translocation/5'-5'	0	0	0	33	0	low	.	.	GRF_zinc_finger(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%)\|	.	.	ENSG00000116830	ENSG00000204055	.	.	downstream	downstream	mismatches(1)	.	.	.
FCGR2C	FCGR2B	+/+	+/+	1:161591179	1:161673017	CDS	CDS	deletion/read-through	0	0	1	2	3	low	.	.	Immunoglobulin_domain(54%)\|Immunoglobulin_domain(44%)	.	.	ENSG00000244682	ENSG00000072694	.	.	downstream	upstream	min_support	.	.	.
NSUN4	FAAH	+/+	+/+	1:46361696	1:46402091	CDS	CDS/splice-site	deletion/read-through	1	0	0	1	1	low	.	.	16S_rRNA_methyltransferase_RsmB/F(97%)\|Amidase(100%)	.	.	ENSG00000117481	ENSG00000117480	.	.	downstream	upstream	min_support	.	.	.
FP236383.4	WNK1	-/+	+/+	21:8393854	12:753796	exon	CDS	translocation/3'-3'	0	0	0	13	0	low	.	.	\|Oxidative-stress-responsive_kinase_1_C-terminal_domain(100%),Protein_kinase_domain(100%)	.	.	ENSG00000280614	ENSG00000060237	.	.	downstream	upstream	multimappers(1)	.	.	.
GON4L	FBL	-/-	-/-	1:155816379	19:39834715	intron	CDS	translocation	0	0	1	1	8	low	.	.	\|Fibrillarin(7%)	.	.	ENSG00000116580	ENSG00000105202	.	.	upstream	downstream	min_support	.	.	.
RPL14P1	AC008982.1	+/+	-/+	12:62965818	19:38831105	exon	CDS	translocation/5'-5'	0	0	0	20	0	low	.	.	.	.	.	ENSG00000139239	ENSG00000268083	.	.	downstream	upstream	homopolymer(1)	.	.	.
PRKDC	FP236383.3	-/-	+/+	8:47879521	21:8441484	CDS	intron	translocation	0	0	0	5	19	low	.	.	.	.	.	ENSG00000253729	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
HLA-C	LINC02623(103268),LINC01264(1689)	-/-	./-	6:31270454	10:42977328	CDS	intergenic	translocation	0	0	0	16	0	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%),Immunoglobulin_C1-set_domain(1%)\|	.	.	ENSG00000204525	.	.	.	upstream	downstream	mismatches(1)	.	.	.
ABCC4	ABCC4	-/-	-/-	13:95073288	13:95075510	CDS	CDS	duplication	1	0	0	0	0	low	.	.	ABC_transporter(47%),ABC_transporter_transmembrane_region(97%)\|ABC_transporter(52%),ABC_transporter_transmembrane_region(15%)	.	.	ENSG00000125257	ENSG00000125257	.	.	upstream	downstream	intragenic_exonic	.	.	.
FP236383.3	PNPLA2	+/+	+/+	21:8445536	11:824695	intron	CDS	translocation	0	0	0	3	4	low	.	.	.	.	.	ENSG00000280441	ENSG00000177666	.	.	downstream	upstream	multimappers(1)	.	.	.
HLA-C	C4orf50	-/-	-/-	6:31270454	4:6130047	CDS	intron	translocation	0	0	0	16	0	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%),Immunoglobulin_C1-set_domain(1%)\|Protein_of_unknown_function_(DUF4527)(100%)	.	.	ENSG00000204525	ENSG00000181215	.	.	upstream	downstream	mismatches(2)	.	.	.
DPP7(14337),GRIN1(9640)	DPP7	./-	-/-	9:137129514	9:137114576	intergenic	CDS/splice-site	deletion/read-through	0	1	0	1	3	low	.	.	\|Serine_carboxypeptidase_S28(100%)	.	.	.	ENSG00000176978	.	.	upstream	downstream	min_support	.	.	.
HLA-A	AC008397.2	+/+	-/+	6:29943541	19:18248110	CDS/splice-site	intron	translocation/5'-5'	0	0	0	8	0	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%)\|	.	.	ENSG00000206503	ENSG00000285188	.	.	downstream	upstream	mismatches(1)	.	.	.
HLA-A	DAAM1	+/+	+/+	6:29943541	14:59189039	CDS/splice-site	intron	translocation	0	0	0	8	0	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%)\|Diaphanous_FH3_Domain(100%),Diaphanous_GTPase-binding_Domain(100%),Formin_Homology_2_Domain(100%)	.	.	ENSG00000206503	ENSG00000100592	.	.	downstream	upstream	mismatches(1)	.	.	.
HLA-A	AL109828.1(133205),CBLN4(82921)	+/+	./-	6:29943541	20:55914436	CDS/splice-site	intergenic	translocation	0	0	0	8	0	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%)\|	.	.	ENSG00000206503	.	.	.	downstream	downstream	mismatches(1)	.	.	.
HLA-A	PTP4A2P1(2108),NAGLU(124)	+/+	./+	6:29943541	17:42536117	CDS/splice-site	intergenic	translocation	0	0	0	8	0	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%)\|	.	.	ENSG00000206503	.	.	.	downstream	upstream	mismatches(1)	.	.	.
NPIPB2	LINC00486	-/-	+/-	16:11929139	2:32916556	CDS	intron	translocation/5'-5'	0	0	0	5	489	low	.	.	Nuclear_pore_complex_interacting_protein_(NPIP)(71%)\|	.	.	ENSG00000234719	ENSG00000230876	.	.	upstream	downstream	low_entropy	.	.	.
C1orf43	NLGN4Y	-/-	+/-	1:154207541	Y:14582253	CDS	intron	translocation/5'-5'	0	0	0	10	0	low	.	.	NICE-3_protein(100%)\|	.	.	ENSG00000143612	ENSG00000165246	.	.	upstream	downstream	mismatches(1)	.	.	.
HLA-A	AL359710.1	+/+	-/-	6:29943541	9:99400929	CDS/splice-site	intron	translocation	0	0	0	8	0	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%)\|	.	.	ENSG00000206503	ENSG00000237461	.	.	downstream	downstream	mismatches(1)	.	.	.
U2AF2	FP671120.6	+/+	-/+	19:55669485	21:8210734	CDS	exon	translocation/5'-5'	1	0	0	6	14	low	.	.	RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(70%)\|	.	.	ENSG00000063244	ENSG00000280800	.	.	downstream	upstream	min_support	.	.	.
IGF2R	IGF2R	+/+	+/+	6:160073446	6:160069867	CDS	intron	duplication	1	0	0	5	0	low	.	.	Cation-independent_mannose-6-phosphate_receptor_repeat(72%)\|Cation-independent_mannose-6-phosphate_receptor_repeat(38%),Fibronectin_type_II_domain(100%)	.	.	ENSG00000197081	ENSG00000197081	.	.	downstream	upstream	intragenic_exonic	.	.	.
AC126755.3	NPIPA9	+/+	-/+	16:18316979	16:18360802	exon	intron	deletion/read-through/5'-5'	0	0	0	2	2	low	.	.	.	.	.	ENSG00000276484	ENSG00000233024	.	.	downstream	upstream	multimappers(1)	.	.	.
HLA-A	Z97192.4(20451),AL023802.1(32634)	+/+	./+	6:29943541	22:49685419	CDS/splice-site	intergenic	translocation	0	0	0	8	0	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%)\|	.	.	ENSG00000206503	.	.	.	downstream	upstream	mismatches(1)	.	.	.
AC092647.5	FP236383.3	+/-	+/-	7:55887600	21:8400399	5'UTR	intron	translocation	0	0	0	1	37	low	.	.	.	.	.	ENSG00000249773	ENSG00000280441	.	.	upstream	downstream	mismatches(1)	.	.	.
HLA-A	OSMR-AS1	+/+	-/+	6:29943541	5:38754631	CDS/splice-site	intron	translocation/5'-5'	0	0	0	8	0	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%)\|	.	.	ENSG00000206503	ENSG00000249740	.	.	downstream	upstream	mismatches(1)	.	.	.
HLA-A	SMAD7	+/+	-/+	6:29943541	18:48940099	CDS/splice-site	intron	translocation/5'-5'	0	0	0	8	0	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%)\|	.	.	ENSG00000206503	ENSG00000101665	.	.	downstream	upstream	mismatches(1)	.	.	.
PPP2R5C	FP671120.4	+/+	+/+	14:101912574	21:8217847	3'UTR	intron	translocation	0	1	0	0	30	low	.	.	Protein_phosphatase_2A_regulatory_B_subunit_(B56_family)(100%)\|	.	.	ENSG00000078304	ENSG00000278996	.	.	downstream	upstream	min_support	.	.	.
PPP2R5C	FP236383.3	+/+	+/+	14:101912574	21:8445117	3'UTR	intron	translocation	0	0	0	0	25	low	.	.	Protein_phosphatase_2A_regulatory_B_subunit_(B56_family)(100%)\|	.	.	ENSG00000078304	ENSG00000280441	.	.	downstream	upstream	multimappers(1)	.	.	.
TADA3	FP671120.7	-/-	-/+	3:9789933	21:8255117	CDS	exon	translocation/5'-5'	0	0	0	9	24	low	.	.	.	.	.	ENSG00000171148	ENSG00000281383	.	.	upstream	upstream	multimappers(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916556	21:8401739	intron	intron	translocation	0	0	0	489	31	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	CD37	+/+	+/+	2:32916335	19:49338015	intron	CDS	translocation	0	1	0	332	0	low	.	.	\|Tetraspanin_family(48%)	.	.	ENSG00000230876	ENSG00000104894	.	.	downstream	upstream	min_support	.	.	.
YBX1	YBX1	+/+	+/+	1:42700938	1:42682626	CDS	CDS	duplication	0	0	1	25	21	low	.	.	'Cold-shock'_DNA-binding_domain(100%)\|'Cold-shock'_DNA-binding_domain(100%)	.	.	ENSG00000065978	ENSG00000065978	.	.	downstream	upstream	intragenic_exonic	.	.	.
ACTR3	ACTR3	+/+	+/+	2:113955706	2:113939959	CDS/splice-site	CDS/splice-site	duplication/non-canonical_splicing	0	1	0	4	4	low	.	.	Actin(94%)\|Actin(56%)	.	.	ENSG00000115091	ENSG00000115091	.	.	downstream	upstream	min_support	.	.	.
CGGBP1	LINC01374	-/-	+/+	3:88055812	10:90113238	CDS	intron	translocation	0	0	1	6	1	low	.	.	.	.	.	ENSG00000163320	ENSG00000280560	.	.	upstream	upstream	min_support	.	.	.
PIEZO1	PIEZO1	-/-	-/-	16:88723259	16:88723264	CDS	CDS	duplication/ITD	0	0	0	4	4	low	.	.	Piezo(100%)\|Piezo_non-specific_cation_channel__R-Ras-binding_domain(100%)	.	.	ENSG00000103335	ENSG00000103335	.	.	upstream	downstream	hairpin(2)	.	.	.
FP236383.3	LAP3	+/+	+/+	21:8399267	4:17583494	intron	CDS	translocation	0	0	0	39	12	low	.	.	\|Cytosol_aminopeptidase_family__N-terminal_domain(29%),Cytosol_aminopeptidase_family__catalytic_domain(100%)	.	.	ENSG00000280441	ENSG00000002549	.	.	downstream	upstream	multimappers(1)	.	.	.
TNIP1	TNIP1	-/-	-/-	5:151039190	5:151039225	CDS	CDS/splice-site	duplication/ITD	0	0	0	11	11	low	.	.	\|Leucine_zipper_of_domain_CC2_of_NEMO__NF-kappa-B_essential_modulator(100%)	.	.	ENSG00000145901	ENSG00000145901	.	.	upstream	downstream	hairpin(1),inconsistently_clipped(1)	.	.	.
FP236383.3	LAP3	+/+	+/+	21:8443502	4:17583494	intron	CDS	translocation	0	0	0	36	12	low	.	.	\|Cytosol_aminopeptidase_family__N-terminal_domain(29%),Cytosol_aminopeptidase_family__catalytic_domain(100%)	.	.	ENSG00000280441	ENSG00000002549	.	.	downstream	upstream	multimappers(1)	.	.	.
FP671120.4	AL445253.1	+/+	+/+	21:8217379	1:22143139	intron	intron	translocation	0	0	0	83	0	low	.	.	.	.	.	ENSG00000278996	ENSG00000285873	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	LAP3	+/+	+/+	21:8216233	4:17583494	intron	CDS	translocation	0	1	0	27	12	low	.	.	\|Cytosol_aminopeptidase_family__N-terminal_domain(29%),Cytosol_aminopeptidase_family__catalytic_domain(100%)	.	.	ENSG00000278996	ENSG00000002549	.	.	downstream	upstream	min_support	.	.	.
C1orf43	BRIP1	-/-	-/+	1:154207541	17:61801691	CDS	intron	translocation/5'-5'	0	0	0	10	0	low	.	.	NICE-3_protein(100%)\|	.	.	ENSG00000143612	ENSG00000136492	.	.	upstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/+	+/+	21:8259420	21:8442045	intergenic	intron	deletion/read-through	0	0	0	10	519	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
5_8S_rRNA(2487),FP236383.3(121223)	FP236383.3	./+	+/+	21:8259420	21:8397815	intergenic	intron	deletion/read-through	0	0	0	10	119	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
IRF4	TENM3	+/+	+/+	6:407645	4:182765031	3'UTR	intron	translocation	0	0	0	5	0	low	.	.	Interferon-regulatory_factor_3(100%),Interferon_regulatory_factor_transcription_factor(100%)\|GHH_signature_containing_HNH/Endo_VII_superfamily_nuclease_toxin(100%)	.	.	ENSG00000137265	ENSG00000218336	.	.	downstream	upstream	homopolymer(1)	.	.	.
FP671120.4	FP236383.3	+/+	+/+	21:8215191	21:8397815	intron	intron	deletion/read-through	0	0	0	11	119	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	homopolymer(1)	.	.	.
5_8S_rRNA(2487),FP236383.3(121223)	FP236383.3	./+	+/+	21:8259420	21:8442045	intergenic	intron	deletion/read-through	0	0	0	10	519	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1)	.	.	.
CACNB4	RN7SKP93(278287),AC092623.1(153922)	-/-	./+	2:152088187	2:133874686	intron	intergenic	inversion	0	0	0	8	0	low	.	.	.	.	.	ENSG00000182389	.	.	.	upstream	upstream	multimappers(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8215187	21:8398141	intron	intron	deletion/read-through	0	0	0	11	7	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	duplicates	.	.	.
UBR5	FP236383.3	-/-	+/+	8:102279168	21:8442092	CDS	intron	translocation	0	0	0	7	278	low	.	.	E3_ubiquitin_ligase_EDD(100%)\|	.	.	ENSG00000104517	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
TRIB1	FP671120.4	+/+	+/+	8:125436054	21:8210030	CDS	intron	translocation	1	0	0	4	14	low	.	.	Protein_kinase_domain(48%)\|	.	.	ENSG00000173334	ENSG00000278996	.	.	downstream	upstream	min_support	.	.	.
UBR5	5_8S_rRNA(2124),FP236383.3(121586)	-/-	./+	8:102279168	21:8259057	CDS	intergenic	translocation	0	0	0	7	279	low	.	.	E3_ubiquitin_ligase_EDD(100%)\|	.	.	ENSG00000104517	.	.	.	upstream	upstream	multimappers(1)	.	.	.
LINC01320	LSM12	+/-	-/-	2:33767476	17:44066583	intron	CDS	translocation/3'-3'	0	0	0	0	5	low	.	.	\|Anticodon-binding_domain(100%)	.	.	ENSG00000228262	ENSG00000161654	.	.	upstream	downstream	mismatches(1)	.	.	.
MTRNR2L12	LSM12	-/-	-/-	3:96618093	17:44066583	5'UTR	CDS	translocation	0	0	0	0	5	low	.	.	\|Anticodon-binding_domain(100%)	.	.	ENSG00000269028	ENSG00000161654	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	RUNX1	+/.	-/.	2:32916556	21:34799385	intron	CDS	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000159216	.	.	downstream	downstream	low_entropy	.	.	.
EIF4EBP2(2750),NODAL(568)	CCT7	./+	+/+	10:70431368	2:73244034	intergenic	CDS	translocation	0	0	0	0	0	low	.	.	\|TCP-1/cpn60_chaperonin_family(76%)	.	.	.	ENSG00000135624	.	.	downstream	upstream	mismatches(1)	.	.	.
MT-RNR2	LSM12	+/+	-/-	MT:1813	17:44066583	exon	CDS	translocation	0	0	0	.	5	low	.	.	\|Anticodon-binding_domain(100%)	.	.	ENSG00000210082	ENSG00000161654	.	.	downstream	downstream	uninteresting_contigs(1)	.	.	.
ANO3	CCT7	+/+	+/+	11:26641981	2:73244033	CDS	CDS	translocation	0	0	0	0	0	low	.	.	Calcium-activated_chloride_channel(63%),Dimerisation_domain_of_Ca+-activated_chloride-channel__anoctamin(100%)\|TCP-1/cpn60_chaperonin_family(77%)	.	.	ENSG00000134343	ENSG00000135624	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	RAB11A	+/+	+/-	21:8214772	15:65792762	intron	exon	translocation/5'-5'	0	0	0	135	0	low	.	.	.	.	.	ENSG00000278996	ENSG00000103769	.	.	downstream	downstream	mismatches(1)	.	.	.
CAPN10	DHX34	+/+	+/+	2:240593182	19:47353001	intron	5'UTR	translocation	0	0	0	0	17	low	.	.	Calpain_family_cysteine_protease(70%)\|Helicase_associated_domain_(HA2)(100%),Helicase_conserved_C-terminal_domain(100%),Oligonucleotide/oligosaccharide-binding_(OB)-fold(100%)	.	.	ENSG00000142330	ENSG00000134815	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
LINC01320	LSM12P1	+/-	-/-	2:33767476	8:35525759	intron	exon	translocation/3'-3'	0	0	0	0	4	low	.	.	.	.	.	ENSG00000228262	ENSG00000232024	.	.	upstream	downstream	mismatches(1)	.	.	.
CLMN	CCT7	-/-	+/+	14:95315618	2:73244033	intron	CDS	translocation	0	0	0	0	0	low	.	.	\|TCP-1/cpn60_chaperonin_family(77%)	.	.	ENSG00000165959	ENSG00000135624	.	.	upstream	upstream	mismatches(1)	.	.	.
HLA-E	HLA-G	+/+	+/+	6:30491657	6:29829616	intron	CDS	duplication	1	0	0	25	1	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%),Immunoglobulin_C1-set_domain(100%),MHC_I_C-terminus(6%)\|Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(0%),Immunoglobulin_C1-set_domain(25%)	.	.	ENSG00000204592	ENSG00000204632	.	.	downstream	upstream	min_support	.	.	.
LAPTM5	LINC00486	-/.	+/.	1:30739849	2:32916555	CDS	intron	translocation	0	0	0	53	489	low	.	.	.	.	.	ENSG00000162511	ENSG00000230876	.	.	downstream	downstream	low_entropy	.	.	.
MT-RNR2	LSM12P1	+/+	-/-	MT:1813	8:35525759	exon	exon	translocation	0	0	0	.	4	low	.	.	.	.	.	ENSG00000210082	ENSG00000232024	.	.	downstream	downstream	uninteresting_contigs(1)	.	.	.
PUM1	PUM1	-/-	-/-	1:31005853	1:31007102	CDS/splice-site	CDS/splice-site	duplication/non-canonical_splicing	1	0	0	3	1	low	.	.	\|Pumilio-family_RNA_binding_repeat(100%)	.	.	ENSG00000134644	ENSG00000134644	.	.	upstream	downstream	min_support	.	.	.
HLA-B	AC005052.1	-/-	+/-	6:31356760	X:119695799	CDS	exon	translocation/5'-5'	0	0	0	16	0	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(37%)\|	.	.	ENSG00000234745	ENSG00000279601	.	.	upstream	downstream	mismatches(1)	.	.	.
FP236383.3	AP005242.2(4118),AP005242.3(46375)	+/+	./+	21:8444649	18:15010470	intron	intergenic	translocation	0	0	0	59	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	PRPS1L1(59075),HDAC9(28)	+/+	./+	21:8400415	7:18086921	intron	intergenic	translocation	0	0	0	105	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	MCOLN2	+/+	-/+	21:8214772	1:84946772	intron	intron	translocation/5'-5'	0	0	0	135	0	low	.	.	.	.	.	ENSG00000278996	ENSG00000153898	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	PPIH	+/+	+/+	21:8214772	1:42675795	intron	3'UTR	translocation	0	0	0	135	0	low	.	.	.	.	.	ENSG00000278996	ENSG00000171960	.	.	downstream	upstream	mismatches(1)	.	.	.
CACNB4	ARRB1(11028),RPS3(36782)	-/-	./-	2:152088187	11:75362733	intron	intergenic	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000182389	.	.	.	upstream	downstream	multimappers(1)	.	.	.
CSGALNACT1	TUBGCP5	-/-	-/-	8:19662064	15:23005778	intron	intron	translocation	0	0	0	0	3	low	.	.	\|Gamma_tubulin_complex_component_C-terminal(57%)	.	.	ENSG00000147408	ENSG00000275835	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.4	AC093766.1	+/+	+/-	21:8214772	4:138790622	intron	intron	translocation/5'-5'	0	0	0	135	0	low	.	.	.	.	.	ENSG00000278996	ENSG00000250501	.	.	downstream	downstream	mismatches(1)	.	.	.
SLCO5A1	DAZAP1	-/-	+/+	8:69690183	19:1407668	intron	5'UTR	translocation	0	1	0	2	5	low	.	.	Organic_Anion_Transporter_Polypeptide_(OATP)_family(55%)\|RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)	.	.	ENSG00000137571	ENSG00000071626	.	.	upstream	upstream	min_support	.	.	.
FP236383.3	DAZAP1	+/+	+/+	21:8445002	19:1407668	intron	5'UTR	translocation	0	0	0	12	5	low	.	.	\|RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)	.	.	ENSG00000280441	ENSG00000071626	.	.	downstream	upstream	multimappers(1)	.	.	.
LINC02652	POLR2A	-/+	+/+	10:28483574	17:7513118	intron	CDS	translocation/3'-3'	0	0	0	0	3	low	.	.	\|RNA_polymerase_Rpb1_C-terminal_repeat_(99%)	.	.	ENSG00000237128	ENSG00000181222	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	FP236383.3	+/+	+/+	21:8443382	21:8443335	intron	intron	duplication/ITD	0	0	0	62	41	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	downstream	upstream	low_entropy(1)	.	.	.
FP671120.4	5_8S_rRNA(3405),FP236383.3(120305)	+/+	./+	21:8216097	21:8260338	intron	intergenic	deletion/read-through	0	0	0	54	62	low	.	.	.	.	.	ENSG00000278996	.	.	.	downstream	upstream	mismatches(1)	.	.	.
MSH3	MYO16	+/+	+/+	5:80654961	13:108657123	CDS	intron	translocation	0	0	0	1	0	low	.	.	\|Ankyrin_repeats_(3_copies)(100%),Myosin_head_(motor_domain)(100%),Neuronal_tyrosine-phosphorylated_phosphoinositide-3-kinase_adapter(100%)	.	.	ENSG00000113318	ENSG00000041515	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.7	RPL19	-/+	+/+	21:8255025	17:39204083	exon	CDS	translocation/3'-3'	0	0	0	13	36	low	.	.	\|Ribosomal_protein_L19e(17%)	.	.	ENSG00000281383	ENSG00000108298	.	.	downstream	upstream	multimappers(1)	.	.	.
LINC02703	DHX34	+/-	+/+	11:115922089	19:47353001	intron	5'UTR	translocation/3'-3'	0	0	0	0	17	low	.	.	\|Helicase_associated_domain_(HA2)(100%),Helicase_conserved_C-terminal_domain(100%),Oligonucleotide/oligosaccharide-binding_(OB)-fold(100%)	.	.	ENSG00000257067	ENSG00000134815	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
5_8S_rRNA(1523),FP236383.3(122187)	LCOR	./+	+/+	21:8258456	10:96982090	intergenic	CDS	translocation	0	0	0	26	4	low	.	.	\|Domain_of_unknown_function_(DUF4553)(100%)	.	.	.	ENSG00000196233	.	.	downstream	upstream	multimappers(1)	.	.	.
FP236383.5	RPL19	-/+	+/+	21:8438062	17:39204083	exon	CDS	translocation/3'-3'	0	0	0	13	36	low	.	.	\|Ribosomal_protein_L19e(17%)	.	.	ENSG00000281181	ENSG00000108298	.	.	downstream	upstream	multimappers(1)	.	.	.
FP671120.6	RPL19	-/+	+/+	21:8210817	17:39204083	exon	CDS	translocation/3'-3'	0	1	0	11	36	low	.	.	\|Ribosomal_protein_L19e(17%)	.	.	ENSG00000280800	ENSG00000108298	.	.	downstream	upstream	min_support	.	.	.
CCAR1	CCAR1	+/+	+/+	10:68771426	10:68771334	CDS	CDS	duplication/ITD	0	0	0	2	4	low	.	.	DBC1(100%),S1-like(100%),SAP_domain(100%)\|	.	.	ENSG00000060339	ENSG00000060339	.	.	downstream	upstream	duplicates(1),hairpin(1)	.	.	.
BCOR	FP671120.7	-/-	-/+	X:40075040	21:8254805	CDS	exon	translocation/5'-5'	0	0	0	5	26	low	.	.	.	.	.	ENSG00000183337	ENSG00000281383	.	.	upstream	upstream	multimappers(1)	.	.	.
BCOR	FP236383.4	-/-	-/+	X:40075040	21:8393632	CDS	exon	translocation/5'-5'	0	0	0	5	29	low	.	.	.	.	.	ENSG00000183337	ENSG00000280614	.	.	upstream	upstream	multimappers(1)	.	.	.
BCOR	FP671120.6	-/-	-/+	X:40075040	21:8210597	CDS	exon	translocation/5'-5'	1	0	0	5	27	low	.	.	.	.	.	ENSG00000183337	ENSG00000280800	.	.	upstream	upstream	min_support	.	.	.
STMN1(780),PAFAH2(51996)	IGLJ3	./+	+/+	1:25907771	22:22904988	intergenic	CDS	translocation	0	0	0	0	13	low	.	.	.	.	.	.	ENSG00000211678	.	.	downstream	upstream	mismatches(2)	.	.	.
STMN1(780),PAFAH2(51996)	IGLC3	./+	+/+	1:25907771	22:22904988	intergenic	intergenic	translocation	0	0	0	0	13	low	.	.	.	.	.	.	ENSG00000211679	.	.	downstream	upstream	mismatches(1)	.	.	.
Z82188.1(4516),RAC2(4863)	SSTR3	./-	-/-	22:37220407	22:37207839	intergenic	5'UTR/splice-site	deletion/read-through	0	0	0	1	1	low	.	.	\|7_transmembrane_receptor_(rhodopsin_family)(100%)	.	.	.	ENSG00000278195	.	.	upstream	downstream	read_through(1)	.	.	.
HLA-C	NRG1	-/-	+/-	6:31271075	8:32073179	CDS/splice-site	intron	translocation/5'-5'	2	0	0	74	0	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%)\|	.	.	ENSG00000204525	ENSG00000157168	.	.	upstream	downstream	blacklist	.	.	.
LINC00486	METTL16	+/.	-/.	2:32916554	17:2420233	intron	CDS	translocation	0	0	0	489	5	low	.	.	.	.	.	ENSG00000230876	ENSG00000127804	.	.	downstream	downstream	low_entropy	.	.	.
MYH9	FP236383.4	-/-	-/+	22:36285772	21:8393925	CDS	exon	translocation/5'-5'	0	0	0	0	25	low	.	.	Myosin_N-terminal_SH3-like_domain(100%),Myosin_head_(motor_domain)(100%),Myosin_tail(81%)\|	.	.	ENSG00000100345	ENSG00000280614	.	.	upstream	upstream	multimappers(1)	.	.	.
LINC00486	METTL16	+/.	-/.	2:32916552	17:2420233	intron	CDS	translocation	0	0	0	489	5	low	.	.	.	.	.	ENSG00000230876	ENSG00000127804	.	.	downstream	downstream	low_entropy	.	.	.
LINC00486	SYNRG	+/.	-/.	2:32916552	17:37586462	intron	CDS	translocation	0	0	0	489	8	low	.	.	.	.	.	ENSG00000230876	ENSG00000275066	.	.	downstream	downstream	low_entropy	.	.	.
LINC00486	PHKG2	+/.	+/.	2:32916556	16:30757210	intron	3'UTR	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000156873	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	FP671120.4	+/.	+/.	2:32916556	21:8218700	intron	intron	translocation	0	0	0	489	39	low	.	.	.	.	.	ENSG00000230876	ENSG00000278996	.	.	downstream	upstream	low_entropy	.	.	.
DHFR	LSM12P1	-/-	-/-	5:80650905	8:35525759	intron	exon	translocation	0	0	0	0	4	low	.	.	Dihydrofolate_reductase(22%)\|	.	.	ENSG00000228716	ENSG00000232024	.	.	upstream	downstream	mismatches(1)	.	.	.
TTF2	PTCRA	+/+	+/+	1:117101562	6:42923118	3'UTR/splice-site	CDS	translocation	0	0	0	33	0	low	.	.	GRF_zinc_finger(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%)\|Pre-T-cell_antigen_receptor(73%)	.	.	ENSG00000116830	ENSG00000171611	.	.	downstream	upstream	mismatches(1)	.	.	.
TTF2	AL354854.1(11453),SLC25A6P2(75468)	+/+	./+	1:117101562	9:31178433	3'UTR/splice-site	intergenic	translocation	0	0	0	33	0	low	.	.	GRF_zinc_finger(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%)\|	.	.	ENSG00000116830	.	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916555	21:8445970	intron	intron	translocation	0	0	0	489	39	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	downstream	upstream	low_entropy	.	.	.
FP671120.4	5_8S_rRNA(3345),FP236383.3(120365)	+/+	./+	21:8216051	21:8260278	intron	intergenic	deletion/read-through	0	0	0	72	57	low	.	.	.	.	.	ENSG00000278996	.	.	.	downstream	upstream	low_entropy(1)	.	.	.
SRCAP	AC106886.5	+/+	+/+	16:30721290	16:30720847	CDS	CDS	duplication	1	0	0	3	2	low	.	.	HSA_domain(100%),SNF2-related_domain(100%)\|	.	.	ENSG00000080603	ENSG00000282034	.	.	downstream	upstream	intragenic_exonic	.	.	.
IGLV2-14	IGLC3	+/+	+/+	22:22759210	22:22904988	CDS	intergenic	deletion/read-through	0	0	0	1	13	low	.	.	.	.	.	ENSG00000211666	ENSG00000211679	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.5	TRAPPC9	-/+	-/-	21:8438045	8:140300536	exon	CDS	translocation/3'-3'	0	0	0	12	4	low	.	.	\|Transport_protein_Trs120_or_TRAPPC9__TRAPP_II_complex_subunit(26%)	.	.	ENSG00000281181	ENSG00000167632	.	.	downstream	downstream	homopolymer(1)	.	.	.
FP236383.3	FP236383.3	+/+	+/+	21:8400415	21:8400399	intron	intron	duplication/ITD	0	0	0	105	87	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	downstream	upstream	duplicates(10),low_entropy(4)	.	.	.
LINC00486	PRKRIP1	+/.	+/.	2:32916553	7:102396444	intron	CDS	translocation	0	0	0	489	8	low	.	.	.	.	.	ENSG00000230876	ENSG00000128563	.	.	downstream	upstream	mismatches	.	.	.
LINC02726	HLA-DPA1	+/-	-/-	11:23770449	6:33069885	intron	CDS/splice-site	translocation/3'-3'	0	0	0	0	50	low	.	.	\|Class_II_histocompatibility_antigen__alpha_domain(100%),Immunoglobulin_C1-set_domain(100%)	.	.	ENSG00000255193	ENSG00000231389	.	.	upstream	downstream	mismatches(1)	.	.	.
HLA-B	HLA-C	-/-	-/-	6:31356327	6:31271232	CDS	CDS	deletion/read-through	0	1	0	15	16	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(72%)\|Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(28%),Immunoglobulin_C1-set_domain(100%),MHC_I_C-terminus(100%)	.	.	ENSG00000234745	ENSG00000204525	.	.	upstream	downstream	min_support	.	.	.
LINC00486	ITPRIPL2	+/.	+/.	2:32916556	16:19114581	intron	CDS	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000205730	.	.	downstream	upstream	low_entropy	.	.	.
HARS1	FP236383.3	-/-	+/+	5:140691215	21:8442085	CDS/splice-site	intron	translocation	0	0	0	6	278	low	.	.	WHEP-TRS_domain(61%)\|	.	.	ENSG00000170445	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
LINC00486	ITPRIPL2	+/.	+/.	2:32916555	16:19114581	intron	CDS	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000205730	.	.	downstream	upstream	low_entropy	.	.	.
FP236383.3	AF241726.1	+/+	+/-	21:8444649	X:38561519	intron	intron	translocation/5'-5'	0	0	0	59	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000250349	.	.	downstream	downstream	mismatches(1)	.	.	.
BLOC1S4(15876),AC106045.1(29968)	FP671120.4	./-	+/+	4:6733540	21:8216034	intergenic	intron	translocation	0	0	0	0	47	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
SLC24A3-AS1	FP671120.4	-/-	+/+	20:19276931	21:8216034	intron	intron	translocation	0	0	0	0	47	low	.	.	.	.	.	ENSG00000179447	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
FBXW5	FP236383.5	-/-	-/+	9:136940899	21:8438137	3'UTR	exon	translocation/5'-5'	0	0	0	7	23	low	.	.	F-box-like(100%),WD_domain__G-beta_repeat(100%)\|	.	.	ENSG00000159069	ENSG00000281181	.	.	upstream	upstream	multimappers(1)	.	.	.
MSRA	FP671120.4	+/-	+/+	8:10174799	21:8216034	intron	intron	translocation/3'-3'	0	0	0	0	47	low	.	.	.	.	.	ENSG00000175806	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
GLCE	FP671120.4	+/-	+/+	15:69160738	21:8216035	5'UTR	intron	translocation/3'-3'	0	0	0	0	47	low	.	.	.	.	.	ENSG00000138604	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
STX6	FP671120.4	-/+	+/+	1:181022935	21:8216034	5'UTR	intron	translocation/3'-3'	0	0	0	0	47	low	.	.	.	.	.	ENSG00000135823	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
TUBA1B	FP236383.3	-/-	+/+	12:49128112	21:8441531	CDS	intron	translocation	0	0	0	21	19	low	.	.	Tubulin/FtsZ_family__GTPase_domain(100%),Tubulin_C-terminal_domain(100%)\|	.	.	ENSG00000123416	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
MGRN1	FP671120.4	+/+	+/+	16:4681630	21:8210125	CDS	intron	translocation	1	0	0	8	8	low	.	.	Zinc_finger__C3HC4_type_(RING_finger)(100%)\|	.	.	ENSG00000102858	ENSG00000278996	.	.	downstream	upstream	min_support	.	.	.
KBTBD8(7447),MIR4272(206807)	FP671120.4	./+	+/+	3:67018657	21:8216034	intergenic	intron	translocation	0	0	0	0	47	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
RPL7AP8(2763),OPN4(20156)	FP671120.4	./-	+/+	10:86634391	21:8216034	intergenic	intron	translocation	0	0	0	0	47	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
AC103702.2	FP671120.4	-/+	+/+	17:48642349	21:8216035	intron	intron	translocation/3'-3'	0	0	0	0	47	low	.	.	.	.	.	ENSG00000272763	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	ZSCAN29	+/.	-/.	2:32916555	15:43364112	intron	CDS	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000140265	.	.	downstream	downstream	low_entropy	.	.	.
HOXC6	FP671120.4	+/+	+/+	12:54014674	21:8216036	intron	intron	translocation	0	0	0	0	47	low	.	.	.	.	.	ENSG00000197757	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
TARS1	PAQR6	+/+	-/-	5:33448794	1:156246329	intron	intron	translocation	0	0	1	1	1	low	.	.	TGS_domain(45%)\|Haemolysin-III_related(100%)	.	.	ENSG00000113407	ENSG00000160781	.	.	downstream	downstream	min_support	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916555	21:8441986	intron	intron	translocation	0	0	0	489	563	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	downstream	upstream	low_entropy	.	.	.
KCNQ4	FP671120.4	+/-	+/+	1:40837728	21:8216034	CDS	intron	translocation/3'-3'	0	0	0	0	47	low	.	.	.	.	.	ENSG00000117013	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
5_8S_rRNA(3547),FP236383.3(120163)	MID1IP1	./+	+/+	21:8260480	X:38804942	intergenic	5'UTR	translocation	0	0	0	35	6	low	.	.	\|Thyroid_hormone-inducible_hepatic_protein_Spot_14(100%)	.	.	.	ENSG00000165175	.	.	downstream	upstream	multimappers(1)	.	.	.
MAP6	FP671120.4	-/+	+/+	11:75667938	21:8216034	CDS	intron	translocation/3'-3'	0	0	0	0	47	low	.	.	.	.	.	ENSG00000171533	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
MAD1L1	FP236383.5	-/-	-/+	7:1957674	21:8437950	CDS	exon	translocation/5'-5'	0	0	0	5	17	low	.	.	Mitotic_checkpoint_protein(70%)\|	.	.	ENSG00000002822	ENSG00000281181	.	.	upstream	upstream	multimappers(1)	.	.	.
FP671120.4	RPS2	+/+	-/-	21:8216485	16:1962794	intron	CDS	translocation	0	1	0	10	33	low	.	.	\|Ribosomal_protein_S5__C-terminal_domain(100%),Ribosomal_protein_S5__N-terminal_domain(9%)	.	.	ENSG00000278996	ENSG00000140988	.	.	downstream	downstream	min_support	.	.	.
FP236383.3	RPS2	+/+	-/-	21:8399519	16:1962794	intron	CDS	translocation	0	0	0	13	33	low	.	.	\|Ribosomal_protein_S5__C-terminal_domain(100%),Ribosomal_protein_S5__N-terminal_domain(9%)	.	.	ENSG00000280441	ENSG00000140988	.	.	downstream	downstream	multimappers(1)	.	.	.
LINC00486	TRIM28	+/.	+/.	2:32916555	19:58549505	intron	CDS	translocation	0	0	0	489	6	low	.	.	.	.	.	ENSG00000230876	ENSG00000130726	.	.	downstream	upstream	low_entropy	.	.	.
AC119677.1(25237),AL391730.1(36197)	HLA-DPA1	./-	-/-	1:40901907	6:33069885	intergenic	CDS/splice-site	translocation	0	0	0	0	50	low	.	.	\|Class_II_histocompatibility_antigen__alpha_domain(100%),Immunoglobulin_C1-set_domain(100%)	.	.	.	ENSG00000231389	.	.	upstream	downstream	mismatches(1)	.	.	.
CACNB4	EPCAM-DT	-/-	-/-	2:152088187	2:47264071	intron	intron	deletion	0	0	0	8	0	low	.	.	.	.	.	ENSG00000182389	ENSG00000234690	.	.	upstream	downstream	multimappers(1)	.	.	.
CACNB4	LINC02635(27802),CUL2(5171)	-/-	./+	2:152088187	10:35003380	intron	intergenic	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000182389	.	.	.	upstream	upstream	multimappers(1)	.	.	.
LINC00486	SERINC1	+/+	-/-	2:32916544	6:122456598	intron	CDS	translocation	0	0	0	489	15	low	.	.	\|Serine_incorporator_(Serinc)(84%)	.	.	ENSG00000230876	ENSG00000111897	.	.	downstream	downstream	homopolymer(1)	.	.	.
CACNB4	AC009646.2	-/-	+/+	2:152088187	8:53198886	intron	intron	translocation	0	0	0	8	0	low	.	.	.	.	.	ENSG00000182389	ENSG00000254687	.	.	upstream	upstream	multimappers(1)	.	.	.
CACNB4	CCT6B	-/-	-/-	2:152088187	17:34977657	intron	intron	translocation	0	0	0	8	0	low	.	.	\|TCP-1/cpn60_chaperonin_family(100%)	.	.	ENSG00000182389	ENSG00000132141	.	.	upstream	downstream	multimappers(1)	.	.	.
YWHAH	FP236383.3	+/+	+/-	22:31956313	21:8438704	CDS	intron	translocation/5'-5'	0	0	0	6	8	low	.	.	14-3-3_protein(34%)\|	.	.	ENSG00000128245	ENSG00000280441	.	.	downstream	downstream	multimappers(1)	.	.	.
HLA-C	SYN2	-/-	+/+	6:31270454	3:12181378	CDS	intron	translocation	0	0	0	16	0	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%),Immunoglobulin_C1-set_domain(1%)\|	.	.	ENSG00000204525	ENSG00000157152	.	.	upstream	upstream	mismatches(1)	.	.	.
TTF2	THORLNC(217352),LINC01956(327363)	+/+	./+	1:117101562	2:118439602	3'UTR/splice-site	intergenic	translocation	0	0	0	33	0	low	.	.	GRF_zinc_finger(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%)\|	.	.	ENSG00000116830	.	.	.	downstream	upstream	mismatches(1)	.	.	.
PI4KB	LINC00486	-/.	+/.	1:151316175	2:32916556	CDS	intron	translocation	0	0	0	3	489	low	.	.	.	.	.	ENSG00000143393	ENSG00000230876	.	.	downstream	downstream	low_entropy	.	.	.
CPQ	HLA-DPA1	+/-	-/-	8:96666766	6:33069885	intron	CDS/splice-site	translocation/3'-3'	0	0	0	0	50	low	.	.	\|Class_II_histocompatibility_antigen__alpha_domain(100%),Immunoglobulin_C1-set_domain(100%)	.	.	ENSG00000104324	ENSG00000231389	.	.	upstream	downstream	mismatches(1)	.	.	.
PI4KB	LINC00486	-/.	+/.	1:151316175	2:32916555	CDS	intron	translocation	0	0	0	3	489	low	.	.	.	.	.	ENSG00000143393	ENSG00000230876	.	.	downstream	downstream	low_entropy	.	.	.
C1orf43	CCDC178	-/-	-/+	1:154207541	18:33238179	CDS	intron	translocation/5'-5'	0	0	0	10	0	low	.	.	NICE-3_protein(100%)\|	.	.	ENSG00000143612	ENSG00000166960	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00486	SYNGR2	+/.	+/.	2:32916555	17:78170830	intron	CDS	translocation	0	0	0	489	11	low	.	.	.	.	.	ENSG00000230876	ENSG00000108639	.	.	downstream	upstream	low_entropy	.	.	.
TARBP1	LINC00486	-/.	+/.	1:234429311	2:32916555	CDS	intron	translocation	0	0	0	2	489	low	.	.	.	.	.	ENSG00000059588	ENSG00000230876	.	.	downstream	downstream	low_entropy	.	.	.
RPL23	AC010677.1	-/-	+/+	17:38850122	7:26276554	3'UTR	exon	translocation	0	0	0	37	0	low	.	.	Ribosomal_protein_L14p/L23e(100%)\|	.	.	ENSG00000125691	ENSG00000232383	.	.	upstream	upstream	multimappers(1)	.	.	.
LINC00486	5_8S_rRNA(2945),FP236383.3(120765)	+/.	./.	2:32916556	21:8259878	intron	intergenic	translocation	0	0	0	489	20	low	.	.	.	.	.	ENSG00000230876	.	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	GOLPH3	+/.	-/.	2:32916556	5:32174026	intron	CDS	translocation	0	0	0	489	4	low	.	.	.	.	.	ENSG00000230876	ENSG00000113384	.	.	downstream	downstream	low_entropy	.	.	.
KEAP1	AKAP8L	-/-	-/-	19:10500292	19:15399408	intron	CDS/splice-site	duplication	0	0	0	0	5	low	.	.	\|A-kinase_anchoring_protein_95_(AKAP95)(100%)	.	.	ENSG00000079999	ENSG00000011243	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC02139(19845),GSE1(237)	FP236383.3	./+	+/-	16:85169288	21:8400399	intergenic	intron	translocation	0	0	0	0	37	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	ZSCAN29	+/.	-/.	2:32916556	15:43364112	intron	CDS	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000140265	.	.	downstream	downstream	low_entropy	.	.	.
DDX5	FP671120.4	-/-	+/+	17:64501927	21:8216386	3'UTR	intron	translocation	0	0	0	6	9	low	.	.	DEAD/DEAH_box_helicase(100%),Helicase_conserved_C-terminal_domain(72%)\|	.	.	ENSG00000108654	ENSG00000278996	.	.	upstream	upstream	multimappers(1)	.	.	.
PAXBP1P1(75868),AC005998.1(189331)	AKAP8L	./+	-/-	7:153525743	19:15399408	intergenic	CDS/splice-site	translocation	0	0	0	0	5	low	.	.	\|A-kinase_anchoring_protein_95_(AKAP95)(100%)	.	.	.	ENSG00000011243	.	.	downstream	downstream	mismatches(1)	.	.	.
AC017100.1(23698),RN7SKP44(8372)	AKAP8L	./+	-/-	18:31710521	19:15399410	intergenic	CDS/splice-site	translocation	0	0	0	0	5	low	.	.	\|A-kinase_anchoring_protein_95_(AKAP95)(100%)	.	.	.	ENSG00000011243	.	.	downstream	downstream	mismatches(1)	.	.	.
FER1L6-AS2(513),AC090921.1(20636)	ATP5MC2	./+	-/-	8:124172035	12:53672670	intergenic	exon	translocation	0	0	0	0	4	low	.	.	\|ATP_synthase_subunit_C(100%)	.	.	.	ENSG00000135390	.	.	downstream	downstream	homopolymer(1)	.	.	.
ACTG1	POTEJ	-/-	+/+	17:81512006	2:130656940	CDS	CDS	translocation	0	0	0	53	0	low	.	.	Actin(22%)\|Actin(83%)	.	.	ENSG00000184009	ENSG00000222038	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00486	SERINC1	+/+	-/-	2:32916545	6:122456598	intron	CDS	translocation	0	0	0	489	15	low	.	.	\|Serine_incorporator_(Serinc)(84%)	.	.	ENSG00000230876	ENSG00000111897	.	.	downstream	downstream	homopolymer(1)	.	.	.
KCNAB2	FP236383.5	+/+	-/+	1:6091387	21:8438317	intron	exon	translocation/5'-5'	0	0	0	3	26	low	.	.	Aldo/keto_reductase_family(45%)\|	.	.	ENSG00000069424	ENSG00000281181	.	.	downstream	upstream	multimappers(1)	.	.	.
RNU7-152P(139408),AL589693.1(116761)	AKAP8L	./+	-/-	6:155794434	19:15399410	intergenic	CDS/splice-site	translocation	0	0	0	0	5	low	.	.	\|A-kinase_anchoring_protein_95_(AKAP95)(100%)	.	.	.	ENSG00000011243	.	.	downstream	downstream	mismatches(1)	.	.	.
FP236383.3	NBEAL2	+/+	+/+	21:8437352	3:47002080	intron	CDS	translocation	0	0	0	17	6	low	.	.	\|Beige/BEACH_domain(100%),Domain_of_unknown_function_(DUF4800)(77%),PH_domain_associated_with_Beige/BEACH(100%),WD_domain__G-beta_repeat(100%)	.	.	ENSG00000280441	ENSG00000160796	.	.	downstream	upstream	multimappers(1)	.	.	.
FP671120.4	NBEAL2	+/+	+/+	21:8210107	3:47002080	intron	CDS	translocation	0	1	0	15	6	low	.	.	\|Beige/BEACH_domain(100%),Domain_of_unknown_function_(DUF4800)(77%),PH_domain_associated_with_Beige/BEACH(100%),WD_domain__G-beta_repeat(100%)	.	.	ENSG00000278996	ENSG00000160796	.	.	downstream	upstream	min_support	.	.	.
ACAT2	ACAT2	+/+	+/+	6:159762142	6:159762919	CDS/splice-site	CDS/splice-site	deletion/read-through	0	0	0	1	1	low	.	.	Thiolase__N-terminal_domain(4%)\|Thiolase__C-terminal_domain(100%),Thiolase__N-terminal_domain(95%)	.	.	ENSG00000120437	ENSG00000120437	.	.	downstream	upstream	read_through(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916559	21:8441346	intron	intron	translocation	0	0	0	489	18	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	downstream	upstream	mismatches	.	.	.
YBX3	5_8S_rRNA(3392),FP236383.3(120318)	-/-	./+	12:10723008	21:8260325	CDS	intergenic	translocation	0	0	0	9	62	low	.	.	.	.	.	ENSG00000060138	.	.	.	upstream	upstream	multimappers(1)	.	.	.
GNAS	GNAS	+/+	+/+	20:58903686	20:58891721	CDS	5'UTR	duplication	0	0	0	6	10	low	.	.	G-protein_alpha_subunit(30%),Neuroendocrine-specific_golgi_protein_P55_(NESP55)(100%)\|G-protein_alpha_subunit(92%)	.	.	ENSG00000087460	ENSG00000087460	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	FP236383.3	+/+	+/+	21:8446083	21:8441604	intron	intron	duplication	0	0	0	39	8	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	downstream	upstream	multimappers(1)	.	.	.
FBXO42	FP671120.4	-/-	+/+	1:16251663	21:8215110	CDS	intron	translocation	1	0	0	4	10	low	.	.	F-box-like(100%),Galactose_oxidase__central_domain(100%),Kelch_motif(100%)\|	.	.	ENSG00000037637	ENSG00000278996	.	.	upstream	upstream	min_support	.	.	.
AL450405.1	AC018475.1	+/+	-/-	6:117999211	12:95467747	exon	exon	translocation	0	0	0	11	0	low	.	.	.	.	.	ENSG00000230202	ENSG00000241556	.	.	downstream	downstream	multimappers(1)	.	.	.
HLA-A	PDE4C	+/+	-/+	6:29943541	19:18248110	CDS/splice-site	intron	translocation/5'-5'	0	0	0	8	0	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%)\|	.	.	ENSG00000206503	ENSG00000105650	.	.	downstream	upstream	mismatches(1)	.	.	.
RPL29	RPL29P2	-/-	+/+	3:51993992	17:7754501	CDS	exon	translocation	0	0	0	31	0	low	.	.	Ribosomal_L29e_protein_family(100%)\|	.	.	ENSG00000162244	ENSG00000240480	.	.	upstream	upstream	multimappers(1)	.	.	.
RBM6	RBM5	+/+	+/+	3:50093820	3:50093724	3'UTR	CDS	duplication	0	0	0	2	3	low	.	.	G-patch_domain(100%),OCRE_domain(100%)\|G-patch_domain(100%),OCRE_domain(100%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%),Zn-finger_in_Ran_binding_protein_and_others(100%)	.	.	ENSG00000004534	ENSG00000003756	.	.	downstream	upstream	duplicates(1),hairpin(1)	.	.	.
AL450405.1	AL096829.1	+/+	+/+	6:117999211	1:75582209	exon	exon	translocation	0	0	0	11	0	low	.	.	.	.	.	ENSG00000230202	ENSG00000213579	.	.	downstream	upstream	multimappers(1)	.	.	.
AL450405.1	RPL29	+/+	-/-	6:117999211	3:51994114	exon	CDS	translocation	0	0	0	11	23	low	.	.	\|Ribosomal_L29e_protein_family(9%)	.	.	ENSG00000230202	ENSG00000162244	.	.	downstream	downstream	multimappers(1)	.	.	.
LINC00486	PRKRIP1	+/.	+/.	2:32916556	7:102396444	intron	CDS	translocation	0	0	0	489	8	low	.	.	.	.	.	ENSG00000230876	ENSG00000128563	.	.	downstream	upstream	mismatches	.	.	.
AL450405.1	RPL29P2	+/+	+/+	6:117999211	17:7754501	exon	exon	translocation	0	0	0	11	0	low	.	.	.	.	.	ENSG00000230202	ENSG00000240480	.	.	downstream	upstream	multimappers(1)	.	.	.
RPL29	AL450405.1	-/-	+/+	3:51993992	6:117999089	CDS	exon	translocation	1	0	0	31	13	low	.	.	Ribosomal_L29e_protein_family(100%)\|	.	.	ENSG00000162244	ENSG00000230202	.	.	upstream	upstream	min_support	.	.	.
FP236383.3	FP236383.3	+/+	+/+	21:8442012	21:8441987	intron	intron	duplication/ITD	0	0	0	567	563	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	downstream	upstream	low_entropy(1),merge_adjacent	.	.	.
DPF1	FMR1	-/+	+/+	19:38217529	X:147912048	CDS	5'UTR	translocation/3'-3'	0	0	0	0	6	low	.	.	\|Agenet_domain(100%),FMRP_KH0_domain(100%),Fragile_X-related_1_protein_core_C_terminal(100%),Fragile_X-related_mental_retardation_protein_C-terminal_region_2(100%),Fragile_X_mental_retardation_Tudor_domain(100%),KH_domain(100%)	.	.	ENSG00000011332	ENSG00000102081	.	.	downstream	upstream	mismatches(1)	.	.	.
NAP1L1	NAP1L1P3	-/-	+/+	12:76049668	3:120806578	3'UTR	exon	translocation	1	0	0	1	0	low	.	.	Nucleosome_assembly_protein_(NAP)(100%)\|	.	.	ENSG00000187109	ENSG00000213371	.	.	upstream	upstream	min_support	.	.	.
RPL29	AL096829.1	-/-	+/+	3:51993992	1:75582209	CDS	exon	translocation	0	0	0	31	0	low	.	.	Ribosomal_L29e_protein_family(100%)\|	.	.	ENSG00000162244	ENSG00000213579	.	.	upstream	upstream	multimappers(1)	.	.	.
RPL14	RPL14	+/+	+/+	3:40462055	3:40462047	CDS	CDS	duplication/ITD	0	0	0	60	53	low	.	.	Ribosomal_protein_L14(100%)\|	.	.	ENSG00000188846	ENSG00000188846	.	.	downstream	upstream	low_entropy(5)	.	.	.
IGLC2	IGLC3	+/+	+/+	22:22901187	22:22906554	CDS	CDS	deletion/read-through	0	0	0	4	153	low	.	.	.	.	.	ENSG00000211677	ENSG00000211679	.	.	downstream	upstream	read_through(1)	.	.	.
AC091959.1	RBM27	+/+	+/+	5:146230676	5:146229717	CDS	CDS/splice-site	duplication	1	0	0	1	1	low	.	.	PWI_domain(100%)\|RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%),Zinc_finger_C-x8-C-x5-C-x3-H_type_(and_similar)(100%)	.	.	ENSG00000275740	ENSG00000091009	.	.	downstream	upstream	intragenic_exonic	.	.	.
IPO8	IPO8	-/-	-/-	12:30652230	12:30653027	CDS	CDS	duplication	0	0	0	1	1	low	.	.	Cse1(100%),Importin-beta_N-terminal_domain(100%)\|	.	.	ENSG00000133704	ENSG00000133704	.	.	upstream	downstream	hairpin(1)	.	.	.
PTPRE	DHX34	+/-	+/+	10:128034296	19:47353001	intron	5'UTR	translocation/3'-3'	0	0	0	0	17	low	.	.	\|Helicase_associated_domain_(HA2)(100%),Helicase_conserved_C-terminal_domain(100%),Oligonucleotide/oligosaccharide-binding_(OB)-fold(100%)	.	.	ENSG00000132334	ENSG00000134815	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
SETD5	SETD5	+/+	+/+	3:9440547	3:9435854	CDS	CDS	duplication	0	0	0	1	1	low	.	.	\|SET_domain(100%)	.	.	ENSG00000168137	ENSG00000168137	.	.	downstream	upstream	hairpin(1)	.	.	.
MAN1A2	MAN1A2	+/+	+/+	1:117414831	1:117402186	CDS/splice-site	CDS/splice-site	duplication/non-canonical_splicing	0	1	0	1	2	low	.	.	Glycosyl_hydrolase_family_47(16%)\|Glycosyl_hydrolase_family_47(100%)	.	.	ENSG00000198162	ENSG00000198162	.	.	downstream	upstream	min_support	.	.	.
FP671120.4	FP236383.3	+/+	+/+	21:8217376	21:8444371	intron	intron	deletion/read-through	0	0	0	83	26	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	FP236383.3	+/-	+/+	21:8441973	21:8445117	intron	intron	inversion/3'-3'	0	0	0	567	25	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	upstream	low_entropy(1)	.	.	.
FP236383.3	FP671120.4	+/-	+/+	21:8441973	21:8217847	intron	intron	inversion/3'-3'	0	0	0	567	30	low	.	.	.	.	.	ENSG00000280441	ENSG00000278996	.	.	upstream	upstream	low_entropy(1)	.	.	.
LINC00486	ZPR1	+/.	-/.	2:32916555	11:116787514	intron	CDS	translocation	0	0	0	489	3	low	.	.	.	.	.	ENSG00000230876	ENSG00000109917	.	.	downstream	downstream	low_entropy	.	.	.
5_8S_rRNA(2005),FP236383.3(121705)	FP671120.4	./-	+/+	21:8258938	21:8217847	intergenic	intron	inversion	0	0	0	466	30	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	low_entropy(1)	.	.	.
VSTM5(7486),AP002795.1(133242)	POLR2A	./-	+/+	11:93858104	17:7513116	intergenic	CDS	translocation	0	0	0	0	3	low	.	.	\|RNA_polymerase_Rpb1_C-terminal_repeat_(99%)	.	.	.	ENSG00000181222	.	.	upstream	upstream	homopolymer(1)	.	.	.
FP236383.3	FP236383.3	+/-	+/+	21:8441973	21:8400885	intron	intron	inversion/3'-3'	0	0	0	567	31	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	upstream	low_entropy(1)	.	.	.
LINC00486	FP671120.4	+/.	+/.	2:32916555	21:8214776	intron	intron	translocation	0	0	0	489	165	low	.	.	.	.	.	ENSG00000230876	ENSG00000278996	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	5_8S_rRNA(2072),FP236383.3(121638)	+/.	./.	2:32916555	21:8259005	intron	intergenic	translocation	0	0	0	489	491	low	.	.	.	.	.	ENSG00000230876	.	.	.	downstream	upstream	duplicates	.	.	.
LINC01924	ATXN2	+/-	-/-	18:64138854	12:111470707	intron	CDS	translocation/3'-3'	0	0	0	0	2	low	.	.	.	.	.	ENSG00000267134	ENSG00000204842	.	.	upstream	downstream	inconsistently_clipped(1)	.	.	.
5_8S_rRNA(3781),FP236383.3(119929)	RPS2	./+	-/-	21:8260714	16:1962794	intergenic	CDS	translocation	0	0	0	13	33	low	.	.	\|Ribosomal_protein_S5__C-terminal_domain(100%),Ribosomal_protein_S5__N-terminal_domain(9%)	.	.	.	ENSG00000140988	.	.	downstream	downstream	multimappers(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916556	21:8397810	intron	intron	translocation	0	0	0	489	119	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916555	21:8397810	intron	intron	translocation	0	0	0	489	119	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	downstream	upstream	low_entropy	.	.	.
KIF21B	FP236383.5	-/-	-/+	1:200998560	21:8438408	CDS	exon	translocation/5'-5'	0	0	0	3	17	low	.	.	Kinesin_motor_domain(100%)\|	.	.	ENSG00000116852	ENSG00000281181	.	.	upstream	upstream	multimappers(1)	.	.	.
KIF21B	FP236383.4	-/-	-/+	1:200998560	21:8394198	CDS	exon	translocation/5'-5'	0	0	0	3	20	low	.	.	Kinesin_motor_domain(100%)\|	.	.	ENSG00000116852	ENSG00000280614	.	.	upstream	upstream	multimappers(1)	.	.	.
H3C15	LINC00486	+/.	+/.	1:149852910	2:32916556	CDS	intron	translocation	0	0	0	34	489	low	.	.	.	.	.	ENSG00000203852	ENSG00000230876	.	.	upstream	downstream	low_entropy	.	.	.
KIF21B	FP671120.6	-/-	-/+	1:200998560	21:8211163	CDS	exon	translocation/5'-5'	1	0	0	3	17	low	.	.	Kinesin_motor_domain(100%)\|	.	.	ENSG00000116852	ENSG00000280800	.	.	upstream	upstream	min_support	.	.	.
RPS4Y1	FP236383.3	+/+	+/+	Y:2844169	21:8398743	CDS	intron	translocation	0	0	0	4	25	low	.	.	RS4NT_(NUC023)_domain(100%)\|	.	.	ENSG00000129824	ENSG00000280441	.	.	downstream	upstream	multimappers(1)	.	.	.
MAD1L1	FP671120.7	-/-	-/+	7:1957674	21:8254913	CDS	exon	translocation/5'-5'	0	0	0	5	20	low	.	.	Mitotic_checkpoint_protein(70%)\|	.	.	ENSG00000002822	ENSG00000281383	.	.	upstream	upstream	multimappers(1)	.	.	.
AC069288.1	FP236383.5	-/-	-/+	7:1957674	21:8437950	3'UTR	exon	translocation/5'-5'	0	0	0	5	17	low	.	.	.	.	.	ENSG00000286192	ENSG00000281181	.	.	upstream	upstream	multimappers(1)	.	.	.
MAD1L1	FP236383.4	-/-	-/+	7:1957674	21:8393740	CDS	exon	translocation/5'-5'	0	0	0	5	20	low	.	.	Mitotic_checkpoint_protein(70%)\|	.	.	ENSG00000002822	ENSG00000280614	.	.	upstream	upstream	multimappers(1)	.	.	.
FP671120.4	RPS2P5	+/-	+/+	21:8216932	12:118246169	intron	exon	translocation/3'-3'	0	0	0	12	21	low	.	.	.	.	.	ENSG00000278996	ENSG00000240342	.	.	upstream	upstream	multimappers(1)	.	.	.
5_8S_rRNA(3295),FP236383.3(120415)	FP236383.3	./+	+/+	21:8260228	21:8399040	intergenic	intron	deletion/read-through	0	0	0	30	17	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1),multimappers(1)	.	.	.
AC069288.1	FP236383.4	-/-	-/+	7:1957674	21:8393740	3'UTR	exon	translocation/5'-5'	0	0	0	5	20	low	.	.	.	.	.	ENSG00000286192	ENSG00000280614	.	.	upstream	upstream	multimappers(1)	.	.	.
ACTG1	ACTG1P9	-/-	+/+	17:81512006	6:46205166	CDS	exon	translocation	0	0	0	53	0	low	.	.	Actin(22%)\|	.	.	ENSG00000184009	ENSG00000229349	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	5_8S_rRNA(2048),FP236383.3(121662)	+/-	./-	21:8397784	21:8258981	intron	intergenic	deletion/read-through	0	0	0	127	511	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	downstream	low_entropy(1)	.	.	.
MAD1L1	FP671120.6	-/-	-/+	7:1957674	21:8210705	CDS	exon	translocation/5'-5'	1	0	0	5	17	low	.	.	Mitotic_checkpoint_protein(70%)\|	.	.	ENSG00000002822	ENSG00000280800	.	.	upstream	upstream	min_support	.	.	.
AC069288.1	FP671120.6	-/-	-/+	7:1957674	21:8210705	3'UTR	exon	translocation/5'-5'	1	0	0	5	17	low	.	.	.	.	.	ENSG00000286192	ENSG00000280800	.	.	upstream	upstream	min_support	.	.	.
5_8S_rRNA(3118),FP236383.3(120592)	TAF4	./+	-/-	21:8260051	20:61997654	intergenic	CDS	translocation	0	0	0	22	4	low	.	.	\|Transcription_initiation_factor_TFIID_component_TAF4_family(34%)	.	.	.	ENSG00000130699	.	.	downstream	downstream	multimappers(1)	.	.	.
5_8S_rRNA(3393),FP236383.3(120317)	FP236383.3	./+	+/+	21:8260326	21:8443378	intergenic	intron	deletion/read-through	0	0	0	68	61	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
LIN9	TUBGCP5	-/+	-/-	1:226289856	15:23005778	intron	intron	translocation/3'-3'	0	0	0	0	3	low	.	.	\|Gamma_tubulin_complex_component_C-terminal(57%)	.	.	ENSG00000183814	ENSG00000275835	.	.	downstream	downstream	mismatches(1)	.	.	.
FP236383.3	PSD4	+/+	+/+	21:8392743	2:113199179	intron	CDS	translocation	0	1	0	14	3	low	.	.	.	.	.	ENSG00000280441	ENSG00000125637	.	.	downstream	upstream	min_support	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916419	21:8443322	intron	intron	translocation/3'-3'	0	0	0	219	41	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	upstream	upstream	mismatches	.	.	.
CNOT6	FP236383.3	+/+	+/+	5:180567909	21:8440388	CDS	intron	translocation	1	0	0	2	2	low	.	.	Endonuclease/Exonuclease/phosphatase_family(34%),Leucine_rich_repeat(100%)\|	.	.	ENSG00000113300	ENSG00000280441	.	.	downstream	upstream	min_support	.	.	.
LINC00486	HSPA8	+/.	-/.	2:32916555	11:123058713	intron	CDS	translocation	0	0	0	489	26	low	.	.	.	.	.	ENSG00000230876	ENSG00000109971	.	.	downstream	downstream	low_entropy	.	.	.
SPINDOC	SPINDOC	+/+	+/+	11:63818313	11:63818235	CDS	CDS	duplication/ITD	0	0	0	4	4	low	.	.	Spin-doc_zinc-finger(100%)\|	.	.	ENSG00000168005	ENSG00000168005	.	.	downstream	upstream	duplicates(1),hairpin(1)	.	.	.
LINC00486	H3P6	+/.	+/.	2:32916399	2:174720123	intron	exon	deletion	0	0	0	53	1	low	.	.	.	.	.	ENSG00000230876	ENSG00000235655	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	PPP1R12C	+/.	-/.	2:32916556	19:55096140	intron	CDS	translocation	0	0	0	489	3	low	.	.	.	.	.	ENSG00000230876	ENSG00000125503	.	.	downstream	downstream	low_entropy	.	.	.
AC005906.2	HSP90AB1	+/-	+/+	12:5013286	6:44250347	intron	CDS	translocation/3'-3'	0	1	0	0	11	low	.	.	\|Hsp90_protein(91%)	.	.	ENSG00000256654	ENSG00000096384	.	.	upstream	upstream	min_support	.	.	.
FP236383.3	RPS2	+/-	-/-	21:8399966	16:1964540	intron	CDS	translocation/3'-3'	0	0	0	5	57	low	.	.	\|Ribosomal_protein_S5__C-terminal_domain(100%),Ribosomal_protein_S5__N-terminal_domain(100%)	.	.	ENSG00000280441	ENSG00000140988	.	.	upstream	downstream	multimappers(1)	.	.	.
LARP1	LARP1	+/+	+/+	5:154803656	5:154803589	CDS	CDS	duplication/ITD	0	0	0	8	7	low	.	.	La_domain(100%)\|	.	.	ENSG00000155506	ENSG00000155506	.	.	downstream	upstream	duplicates(1),hairpin(1)	.	.	.
RPL3	FP671120.4	-/-	+/+	22:39315483	21:8216748	CDS	intron	translocation	0	0	0	28	34	low	.	.	Ribosomal_protein_L3(51%)\|	.	.	ENSG00000100316	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	RPS2	+/-	-/-	21:8444201	16:1964540	intron	CDS	translocation/3'-3'	0	0	0	6	57	low	.	.	\|Ribosomal_protein_S5__C-terminal_domain(100%),Ribosomal_protein_S5__N-terminal_domain(100%)	.	.	ENSG00000280441	ENSG00000140988	.	.	upstream	downstream	multimappers(1)	.	.	.
LINC00486	KIF1C	+/.	+/.	2:32916555	17:5005028	intron	intron	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000129250	.	.	downstream	upstream	low_entropy	.	.	.
FP236383.3	RPS2P55	+/-	-/-	21:8399966	X:40935778	intron	exon	translocation/3'-3'	0	0	0	5	21	low	.	.	.	.	.	ENSG00000280441	ENSG00000216866	.	.	upstream	downstream	multimappers(1)	.	.	.
AL450998.1	RPS16	+/+	-/-	1:15828280	19:39435704	exon	CDS/splice-site	translocation	0	1	0	0	26	low	.	.	\|Ribosomal_protein_S9/S16(96%)	.	.	ENSG00000178715	ENSG00000105193	.	.	downstream	downstream	min_support	.	.	.
FP236383.3	RPS2P5	+/-	+/+	21:8444201	12:118246169	intron	exon	translocation/3'-3'	0	0	0	6	21	low	.	.	.	.	.	ENSG00000280441	ENSG00000240342	.	.	upstream	upstream	multimappers(1)	.	.	.
IL18BP	IL18BP	+/+	+/+	11:72000556	11:72000447	CDS/splice-site	CDS	duplication	0	0	0	2	2	low	.	.	.	.	.	ENSG00000137496	ENSG00000137496	.	.	downstream	upstream	hairpin(1)	.	.	.
BLOC1S1	BLOC1S1	+/+	+/+	12:55719196	12:55719134	CDS	CDS	duplication/ITD	0	0	0	2	1	low	.	.	GCN5-like_protein_1_(GCN5L1)(67%)\|GCN5-like_protein_1_(GCN5L1)(51%)	.	.	ENSG00000135441	ENSG00000135441	.	.	downstream	upstream	duplicates(1),hairpin(1)	.	.	.
FP236383.3	FP236383.3	+/-	+/-	21:8442017	21:8442013	intron	intron	deletion/read-through	0	0	0	580	567	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	downstream	read_through(1)	.	.	.
FP236383.3	FP236383.3	+/-	+/-	21:8442017	21:8442024	intron	intron	duplication/ITD	0	0	0	580	563	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	downstream	low_entropy(1)	.	.	.
FP671120.4	TBCK	+/-	-/-	21:8217037	4:106308966	intron	5'UTR	translocation/3'-3'	0	1	0	11	4	low	.	.	\|Protein_kinase_domain(100%),Rab-GTPase-TBC_domain(100%),Rhodanese-like_domain(100%)	.	.	ENSG00000278996	ENSG00000145348	.	.	upstream	downstream	min_support	.	.	.
CCDC32	AC020658.2(5636),INAFM2(1422)	-/-	./-	15:40553924	15:40322270	3'UTR	intergenic	deletion/read-through	0	0	0	2	1	low	.	.	Coiled-coil_domain_containing_32(98%)\|	.	.	ENSG00000128891	.	.	.	upstream	downstream	low_entropy	.	.	.
LINC00486	TPT1	+/.	-/.	2:32916556	13:45340726	intron	CDS	translocation	0	0	0	489	36	low	.	.	.	.	.	ENSG00000230876	ENSG00000133112	.	.	downstream	downstream	low_entropy	.	.	.
AL671277.1	LINC00486	-/-	+/-	6:29942768	2:32916556	exon	intron	translocation/5'-5'	0	0	0	45	489	low	.	.	.	.	.	ENSG00000227766	ENSG00000230876	.	.	upstream	downstream	low_entropy	.	.	.
FP671120.4	MID1IP1	+/+	+/+	21:8216251	X:38804942	intron	5'UTR	translocation	0	1	0	32	6	low	.	.	\|Thyroid_hormone-inducible_hepatic_protein_Spot_14(100%)	.	.	ENSG00000278996	ENSG00000165175	.	.	downstream	upstream	min_support	.	.	.
LINC00486	TPT1	+/.	-/.	2:32916555	13:45340726	intron	CDS	translocation	0	0	0	489	36	low	.	.	.	.	.	ENSG00000230876	ENSG00000133112	.	.	downstream	downstream	low_entropy	.	.	.
ABCB9	PARK7	-/-	+/+	12:122969170	1:7965336	intron	CDS	translocation	0	0	0	0	19	low	.	.	\|DJ-1/PfpI_family(82%)	.	.	ENSG00000150967	ENSG00000116288	.	.	upstream	upstream	mismatches(1)	.	.	.
AL671277.1	LINC00486	-/-	+/-	6:29942768	2:32916555	exon	intron	translocation/5'-5'	0	0	0	45	489	low	.	.	.	.	.	ENSG00000227766	ENSG00000230876	.	.	upstream	downstream	low_entropy	.	.	.
FABP5P3	KMT2C	+/-	-/-	7:152436622	7:152435787	intron	5'UTR	deletion/read-through/3'-3'	0	0	0	0	2	low	.	.	\|F/Y-rich_N-terminus(100%),F/Y_rich_C-terminus(100%),PHD-finger(100%),PHD-like_zinc-binding_domain(100%),PHD-zinc-finger_like_domain(100%),SET_domain(100%)	.	.	ENSG00000241735	ENSG00000055609	.	.	upstream	downstream	read_through(1)	.	.	.
IGLL5	IGLC3	+/+	+/+	22:22895586	22:22906554	CDS	CDS	deletion/read-through	0	0	0	2	153	low	.	.	Immunoglobulin_C1-set_domain(74%)\|	.	.	ENSG00000254709	ENSG00000211679	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
GTF3C2	LINC00486	-/.	+/.	2:27326880	2:32916555	CDS	intron	inversion	0	0	0	4	489	low	.	.	.	.	.	ENSG00000115207	ENSG00000230876	.	.	downstream	downstream	low_entropy	.	.	.
STAG1	IL20RB(5960),RNA5SP142(501089)	-/-	./+	3:136443287	3:137017045	CDS/splice-site	intergenic	inversion	1	0	0	1	0	low	.	.	STAG_domain__(100%)\|	.	.	ENSG00000118007	.	.	.	upstream	upstream	min_support	.	.	.
PTPRM	HLA-DPA1	+/-	-/-	18:7722321	6:33069885	intron	CDS/splice-site	translocation/3'-3'	0	0	0	0	50	low	.	.	\|Class_II_histocompatibility_antigen__alpha_domain(100%),Immunoglobulin_C1-set_domain(100%)	.	.	ENSG00000173482	ENSG00000231389	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	RPS3	+/.	+/.	2:32916556	11:75404694	intron	CDS	translocation	0	0	0	489	22	low	.	.	.	.	.	ENSG00000230876	ENSG00000149273	.	.	downstream	upstream	low_entropy	.	.	.
AC069503.2	FP236383.3	+/+	+/+	12:121916322	21:8395008	exon	intron	translocation	0	0	0	5	4	low	.	.	.	.	.	ENSG00000256950	ENSG00000280441	.	.	downstream	upstream	multimappers(1)	.	.	.
FP671120.3(3249),FP671120.7(1194)	FP236383.3	./-	+/+	21:8253398	21:8442037	intergenic	intron	inversion	0	0	0	6	527	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
5_8S_rRNA(3117),FP236383.3(120593)	NCOR1	./+	-/-	21:8260050	17:16048955	intergenic	CDS	translocation	0	0	0	22	4	low	.	.	.	.	.	.	ENSG00000141027	.	.	downstream	downstream	multimappers(1)	.	.	.
LINC00486	NFE2L1	+/.	+/.	2:32916551	17:48059483	intron	CDS	translocation	0	0	0	489	8	low	.	.	.	.	.	ENSG00000230876	ENSG00000082641	.	.	downstream	upstream	low_entropy	.	.	.
GOLGA8B	GOLGA8A	-/-	-/-	15:34529018	15:34382526	CDS/splice-site	CDS	deletion/read-through	0	0	0	9	7	low	.	.	Putative_golgin_subfamily_A_member_2-like_protein_5(100%)\|GM130_C-terminal_binding_motif(100%)	.	.	ENSG00000215252	ENSG00000175265	.	.	upstream	downstream	duplicates(1)	.	.	.
FP671120.4	FP236383.3	+/+	+/+	21:8216006	21:8400399	intron	intron	deletion/read-through	0	0	0	51	87	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	RHOA	+/+	-/-	21:8397273	3:49411872	intron	5'UTR	translocation	0	0	0	31	7	low	.	.	\|Ras_family(100%)	.	.	ENSG00000280441	ENSG00000067560	.	.	downstream	downstream	multimappers(1)	.	.	.
EGLN1	LINC00486	-/.	+/.	1:231421707	2:32916556	CDS	intron	translocation	0	0	0	4	489	low	.	.	.	.	.	ENSG00000135766	ENSG00000230876	.	.	downstream	downstream	low_entropy	.	.	.
PTEN	PTEN	+/+	+/+	10:87864546	10:87864120	CDS/splice-site	5'UTR	duplication	0	0	0	3	0	low	.	.	\|C2_domain_of_PTEN_tumour-suppressor_protein(100%),Dual_specificity_phosphatase__catalytic_domain(100%)	.	.	ENSG00000171862	ENSG00000171862	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	CEBPZ	+/.	-/.	2:32916555	2:37227774	intron	CDS	inversion	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000115816	.	.	downstream	downstream	low_entropy	.	.	.
DNAJC30	FP236383.3	-/-	+/+	7:73682975	21:8444504	CDS	intron	translocation	0	1	0	0	4	low	.	.	DnaJ_domain(100%)\|	.	.	ENSG00000176410	ENSG00000280441	.	.	upstream	upstream	min_support	.	.	.
AC015813.2	FP671120.4	-/-	+/+	17:58006402	21:8213902	CDS	intron	translocation	1	0	0	11	2	low	.	.	.	.	.	ENSG00000266086	ENSG00000278996	.	.	upstream	upstream	min_support	.	.	.
SRSF1	FP671120.4	-/-	+/+	17:58006402	21:8213902	CDS	intron	translocation	1	0	0	11	2	low	.	.	RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(51%)\|	.	.	ENSG00000136450	ENSG00000278996	.	.	upstream	upstream	min_support	.	.	.
LINC00486	RUBCN	+/.	-/.	2:32916556	3:197694473	intron	CDS	translocation	0	0	0	489	4	low	.	.	.	.	.	ENSG00000230876	ENSG00000145016	.	.	downstream	downstream	low_entropy	.	.	.
ODF2L	FP236383.3	-/-	+/+	1:86360426	21:8399269	CDS/splice-site	intron	translocation	0	0	0	5	32	low	.	.	.	.	.	ENSG00000122417	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
ODF2L	FP236383.3	-/-	+/+	1:86360426	21:8443504	CDS/splice-site	intron	translocation	0	0	0	5	24	low	.	.	.	.	.	ENSG00000122417	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
5_8S_rRNA(2054),FP236383.3(121656)	FP236383.3	./+	+/+	21:8258987	21:8442014	intergenic	intron	deletion/read-through	0	0	0	511	580	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	multimappers(1)	.	.	.
HSPA9	HSPA9P1	-/-	+/+	5:138571005	2:221962058	CDS	exon	translocation	0	0	0	6	0	low	.	.	Hsp70_protein(9%)\|	.	.	ENSG00000113013	ENSG00000226666	.	.	upstream	upstream	mismatches(1)	.	.	.
AC138932.3	NPIPA1	-/-	+/-	16:14953015	16:14949405	exon	exon	deletion/read-through/5'-5'	0	0	0	3	1	low	.	.	.	.	.	ENSG00000273804	ENSG00000183426	.	.	upstream	downstream	read_through(1)	.	.	.
ADCY5	ABCC1	-/-	+/+	3:123431002	16:16007816	intron	CDS/splice-site	translocation	0	0	0	0	8	low	.	.	Adenylyl_cyclase_N-terminal_extracellular_and_transmembrane_region(81%)\|ABC_transporter(100%),ABC_transporter_transmembrane_region(100%)	.	.	ENSG00000173175	ENSG00000103222	.	.	upstream	upstream	mismatches(1)	.	.	.
5_8S_rRNA(3335),FP236383.3(120375)	FP236383.3	./+	+/+	21:8260268	21:8399068	intergenic	intron	deletion/read-through	0	3	0	31	64	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(3),multimappers(1),non_coding_neighbors	.	.	.
ART3(979),NUP54(878)	ABCC1	./-	+/+	4:76113781	16:16007816	intergenic	CDS/splice-site	translocation	0	0	0	0	8	low	.	.	\|ABC_transporter(100%),ABC_transporter_transmembrane_region(100%)	.	.	.	ENSG00000103222	.	.	upstream	upstream	mismatches(1)	.	.	.
NINJ2	ABCC1	-/-	+/+	12:587587	16:16007816	intron	CDS/splice-site	translocation	0	0	0	0	8	low	.	.	\|ABC_transporter(100%),ABC_transporter_transmembrane_region(100%)	.	.	ENSG00000171840	ENSG00000103222	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00486	KIF18A	+/.	-/.	2:32916552	11:28069082	intron	intron	translocation	0	0	0	489	13	low	.	.	.	.	.	ENSG00000230876	ENSG00000121621	.	.	downstream	downstream	mismatches	.	.	.
PLEKHO1	FP236383.5	+/+	-/+	1:150156091	21:8438456	CDS	exon	translocation/5'-5'	0	0	0	5	19	low	.	.	PH_domain(41%)\|	.	.	ENSG00000023902	ENSG00000281181	.	.	downstream	upstream	multimappers(1)	.	.	.
FP671120.4	SLIT2	+/+	+/+	21:8217379	4:20252005	intron	5'UTR	translocation	0	0	0	83	0	low	.	.	\|EGF-like_domain(100%),Human_growth_factor-like_EGF(100%),Laminin_G_domain(100%),Leucine_rich_repeat(100%),Leucine_rich_repeat_C-terminal_domain(100%),Leucine_rich_repeat_N-terminal_domain(100%)	.	.	ENSG00000278996	ENSG00000145147	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC02550	RPL28	-/-	+/+	11:111142813	19:55387998	intron	CDS	translocation	0	1	0	0	68	low	.	.	\|Ribosomal_L28e_protein_family(27%)	.	.	ENSG00000271584	ENSG00000108107	.	.	upstream	upstream	min_support	.	.	.
ZBTB9(56073),GGNBP1(26429)	SFMBT2	./-	-/-	6:33513617	10:7367687	intergenic	CDS	translocation	0	0	0	0	3	low	.	.	\|SAM_domain_(Sterile_alpha_motif)(100%),SLED_domain(100%),mbt_repeat(80%)	.	.	.	ENSG00000198879	.	.	upstream	downstream	homopolymer(1)	.	.	.
G3BP2	G3BP2	-/-	-/-	4:75647136	4:75655095	CDS	CDS	duplication	0	0	0	4	9	low	.	.	Nuclear_transport_factor_2_(NTF2)_domain(100%)\|RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)	.	.	ENSG00000138757	ENSG00000138757	.	.	upstream	downstream	hairpin(1)	.	.	.
FP236383.3	AP005242.2(4124),AP005242.3(46369)	+/+	./+	21:8444649	18:15010476	intron	intergenic	translocation	0	0	0	59	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	AP005242.2(4121),AP005242.3(46372)	+/+	./+	21:8444649	18:15010473	intron	intergenic	translocation	0	0	0	59	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	AP005242.2(4115),AP005242.3(46378)	+/+	./+	21:8444649	18:15010467	intron	intergenic	translocation	0	0	0	59	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	PRDM12	+/+	+/-	21:8444649	9:130681634	intron	CDS	translocation/5'-5'	0	0	0	59	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000130711	.	.	downstream	downstream	mismatches(1)	.	.	.
FP236383.3	PRDM12	+/+	+/-	21:8444649	9:130681637	intron	CDS	translocation/5'-5'	0	0	0	59	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000130711	.	.	downstream	downstream	mismatches(1)	.	.	.
FP236383.3	CASKIN1	+/+	-/+	21:8444649	16:2179050	intron	CDS	translocation/5'-5'	0	0	0	59	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000167971	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	CASKIN1	+/+	-/+	21:8444649	16:2179047	intron	CDS	translocation/5'-5'	0	0	0	59	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000167971	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	GOLPH3L	+/+	-/-	2:32916372	1:150694708	intron	CDS	translocation	0	0	0	50	6	low	.	.	\|Golgi_phosphoprotein_3_(GPP34)(100%)	.	.	ENSG00000230876	ENSG00000143457	.	.	downstream	downstream	inconsistently_clipped(1)	.	.	.
FP236383.3	AP005242.2(4127),AP005242.3(46366)	+/+	./+	21:8444649	18:15010479	intron	intergenic	translocation	0	0	0	59	0	low	.	.	.	.	.	ENSG00000280441	.	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	ZNF518B	+/+	-/-	21:8216736	4:10444450	intron	CDS	translocation	0	0	0	22	4	low	.	.	.	.	.	ENSG00000278996	ENSG00000178163	.	.	downstream	downstream	multimappers(1)	.	.	.
DDX42	DDX42	+/+	+/+	17:63818229	17:63818176	CDS	CDS	duplication/ITD	0	0	0	9	7	low	.	.	DEAD/DEAH_box_helicase(100%),Helicase_conserved_C-terminal_domain(100%)\|	.	.	ENSG00000198231	ENSG00000198231	.	.	downstream	upstream	duplicates(1),hairpin(1)	.	.	.
5_8S_rRNA(4032),FP236383.3(119678)	ZNF518B	./+	-/-	21:8260965	4:10444450	intergenic	CDS	translocation	0	0	0	4	4	low	.	.	.	.	.	.	ENSG00000178163	.	.	downstream	downstream	multimappers(1)	.	.	.
FP236383.3	HDGF	+/+	-/-	21:8398462	1:156743873	intron	CDS	translocation	0	0	0	10	4	low	.	.	.	.	.	ENSG00000280441	ENSG00000143321	.	.	downstream	downstream	multimappers(1)	.	.	.
PHRF1	PHRF1	+/+	+/+	11:608971	11:608851	CDS	CDS	duplication	0	0	0	2	1	low	.	.	PHD-finger(100%),Ring_finger_domain(100%)\|	.	.	ENSG00000070047	ENSG00000070047	.	.	downstream	upstream	hairpin(1)	.	.	.
5_8S_rRNA(2724),FP236383.3(120986)	HDGF	./+	-/-	21:8259657	1:156743873	intergenic	CDS	translocation	0	0	0	10	4	low	.	.	.	.	.	.	ENSG00000143321	.	.	downstream	downstream	multimappers(1)	.	.	.
LINC00486	NFE2L1	+/.	+/.	2:32916552	17:48059483	intron	CDS	translocation	0	0	0	489	8	low	.	.	.	.	.	ENSG00000230876	ENSG00000082641	.	.	downstream	upstream	low_entropy	.	.	.
FP236383.3	ASH1L	+/+	-/-	21:8400850	1:155479738	intron	CDS	translocation	0	0	0	23	4	low	.	.	\|AWS_domain(100%),BAH_domain(100%),Bromodomain(100%),SET_domain(100%)	.	.	ENSG00000280441	ENSG00000116539	.	.	downstream	downstream	multimappers(1)	.	.	.
RPL23	RPL23	-/-	-/-	17:38850122	17:38850191	3'UTR	CDS	duplication/ITD	0	0	0	37	41	low	.	.	Ribosomal_protein_L14p/L23e(100%)\|Ribosomal_protein_L14p/L23e(14%)	.	.	ENSG00000125691	ENSG00000125691	.	.	upstream	downstream	duplicates(3),hairpin(1),inconsistently_clipped(1)	.	.	.
RPL23	FO393411.1	-/-	-/-	17:38850122	6:39958470	3'UTR	exon	translocation	1	0	0	37	0	low	.	.	Ribosomal_protein_L14p/L23e(100%)\|	.	.	ENSG00000125691	ENSG00000180211	.	.	upstream	downstream	min_support	.	.	.
RPL23	RPL23P8	-/-	+/+	17:38850122	7:20827689	3'UTR	exon	translocation	0	0	0	37	0	low	.	.	Ribosomal_protein_L14p/L23e(100%)\|	.	.	ENSG00000125691	ENSG00000219451	.	.	upstream	upstream	multimappers(1)	.	.	.
AFMID	GPR78(118318),AC209005.1(7312)	+/+	./-	17:78191060	4:8738079	CDS/splice-site	intergenic	translocation	0	0	0	3	0	low	.	.	.	.	.	ENSG00000183077	.	.	.	downstream	downstream	mismatches(1)	.	.	.
AL450405.1	RPL29P24	+/+	-/-	6:117999211	12:120523003	exon	exon	translocation	0	0	0	11	0	low	.	.	.	.	.	ENSG00000230202	ENSG00000241030	.	.	downstream	downstream	multimappers(1)	.	.	.
RCC2	LINC00486	-/.	+/.	1:17416577	2:32916557	CDS	intron	translocation	0	0	0	11	489	low	.	.	.	.	.	ENSG00000179051	ENSG00000230876	.	.	downstream	downstream	mismatches	.	.	.
CDC20	FP236383.3	+/+	+/+	1:43360087	21:8398809	CDS	intron	translocation	0	0	0	7	23	low	.	.	.	.	.	ENSG00000117399	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
RCC2	LINC00486	-/.	+/.	1:17416577	2:32916553	CDS	intron	translocation	0	0	0	11	489	low	.	.	.	.	.	ENSG00000179051	ENSG00000230876	.	.	downstream	downstream	low_entropy	.	.	.
SEC22B4P	DENND4B	-/+	-/-	1:146376743	1:153933872	intron	intron	inversion/3'-3'	0	0	0	0	1	low	.	.	.	.	.	ENSG00000277406	ENSG00000198837	.	.	downstream	downstream	mismatches(1)	.	.	.
RCC2	LINC00486	-/.	+/.	1:17416577	2:32916551	CDS	intron	translocation	0	0	0	11	489	low	.	.	.	.	.	ENSG00000179051	ENSG00000230876	.	.	downstream	downstream	low_entropy	.	.	.
RCC2	LINC00486	-/.	+/.	1:17416577	2:32916550	CDS	intron	translocation	0	0	0	11	489	low	.	.	.	.	.	ENSG00000179051	ENSG00000230876	.	.	downstream	downstream	low_entropy	.	.	.
LINC00486	DVL3	+/.	+/.	2:32916559	3:184165112	intron	exon	translocation	0	0	0	489	5	low	.	.	.	.	.	ENSG00000230876	ENSG00000161202	.	.	downstream	upstream	mismatches	.	.	.
FP236383.3	MDM4	+/+	+/+	21:8392841	1:204549508	intron	CDS	translocation	0	0	0	19	6	low	.	.	\|Zinc_finger__C3HC4_type_(RING_finger)(100%)	.	.	ENSG00000280441	ENSG00000198625	.	.	downstream	upstream	multimappers(1)	.	.	.
FP671120.4	MDM4	+/+	+/+	21:8209806	1:204549508	intron	CDS	translocation	0	0	1	18	6	low	.	.	\|Zinc_finger__C3HC4_type_(RING_finger)(100%)	.	.	ENSG00000278996	ENSG00000198625	.	.	downstream	upstream	min_support	.	.	.
CR392039.1(917),CR392039.3(8149)	MDM4	./+	+/+	21:8988347	1:204549508	intergenic	CDS	translocation	0	0	0	12	6	low	.	.	\|Zinc_finger__C3HC4_type_(RING_finger)(100%)	.	.	.	ENSG00000198625	.	.	downstream	upstream	multimappers(1)	.	.	.
PPP4R3B	PPP4R3B	-/-	-/-	2:55549966	2:55564431	CDS	CDS	duplication	1	0	0	2	2	low	.	.	Phosphatase_4_regulatory_subunit_3(100%)\|	.	.	ENSG00000275052	ENSG00000275052	.	.	upstream	downstream	intragenic_exonic	.	.	.
LINC00486	KIF18A	+/.	-/.	2:32916556	11:28069082	intron	intron	translocation	0	0	0	489	13	low	.	.	.	.	.	ENSG00000230876	ENSG00000121621	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	KIF18A	+/.	-/.	2:32916544	11:28069082	intron	intron	translocation	0	0	0	489	13	low	.	.	.	.	.	ENSG00000230876	ENSG00000121621	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	KIF18A	+/.	-/.	2:32916555	11:28069082	intron	intron	translocation	0	0	0	489	13	low	.	.	.	.	.	ENSG00000230876	ENSG00000121621	.	.	downstream	downstream	mismatches	.	.	.
LINC00486	KIF18A	+/.	-/.	2:32916554	11:28069082	intron	intron	translocation	0	0	0	489	13	low	.	.	.	.	.	ENSG00000230876	ENSG00000121621	.	.	downstream	downstream	mismatches	.	.	.
YBX3	FP236383.3	-/-	+/+	12:10722942	21:8400468	CDS	intron	translocation	0	0	0	3	68	low	.	.	.	.	.	ENSG00000060138	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
FP236383.5	DKC1	-/+	+/+	21:8438017	X:154766950	exon	intron	translocation/3'-3'	0	0	0	13	4	low	.	.	\|PUA_domain(100%),TruB_family_pseudouridylate_synthase_(N_terminal_domain)(65%),tRNA_pseudouridylate_synthase_B_C-terminal_domain(100%)	.	.	ENSG00000281181	ENSG00000130826	.	.	downstream	upstream	multimappers(1)	.	.	.
RPL14P1	RPL14	+/+	+/+	12:62965801	3:40462044	exon	CDS	translocation	0	1	0	20	53	low	.	.	.	.	.	ENSG00000139239	ENSG00000188846	.	.	downstream	upstream	min_support	.	.	.
PXN	GCN1	-/-	-/-	12:120223001	12:120144448	intron	CDS/splice-site	deletion/read-through	0	0	0	0	1	low	.	.	Paxillin_family(36%)\|	.	.	ENSG00000089159	ENSG00000089154	.	.	upstream	downstream	low_entropy(1)	.	.	.
AC135050.2	AC135050.2	-/-	-/-	16:31090775	16:31091342	intron	CDS/splice-site	duplication	0	1	0	0	1	low	.	.	.	.	.	ENSG00000255439	ENSG00000255439	.	.	upstream	downstream	min_support	.	.	.
AC135050.2	VKORC1	-/-	-/-	16:31090775	16:31091342	intron	CDS/splice-site	duplication	0	1	0	0	1	low	.	.	\|Vitamin_K_epoxide_reductase_family(38%)	.	.	ENSG00000255439	ENSG00000167397	.	.	upstream	downstream	min_support	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8217204	21:8400135	intron	intron	deletion/read-through	0	0	1	17	30	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	mismatches(3),non_coding_neighbors	.	.	.
FP671120.4	FP236383.3	+/+	+/+	21:8217210	21:8400242	intron	intron	deletion/read-through	0	0	0	17	15	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
RNU6-309P(227461),AL928646.1(212)	YARS1	./+	-/-	X:109054330	1:32780106	intergenic	CDS	translocation	0	1	0	0	7	low	.	.	\|Putative_tRNA_binding_domain(28%)	.	.	.	ENSG00000134684	.	.	downstream	downstream	min_support	.	.	.
RIC1	PINK1	+/-	+/+	9:5684272	1:20638026	intron	CDS	translocation/3'-3'	0	1	0	0	1	low	.	.	\|Protein_kinase_domain(100%)	.	.	ENSG00000107036	ENSG00000158828	.	.	upstream	upstream	min_support	.	.	.
RNF213	RNF213	+/+	+/+	17:80390057	17:80388607	CDS	exon	duplication	1	0	0	5	2	low	.	.	Zinc_finger__C3HC4_type_(RING_finger)(100%)\|	.	.	ENSG00000173821	ENSG00000173821	.	.	downstream	upstream	min_support	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916556	21:8441986	intron	intron	translocation	0	0	0	489	563	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	downstream	upstream	low_entropy	.	.	.
FP236383.3	NCOR1	+/+	-/-	21:8398855	17:16048955	intron	CDS	translocation	0	0	0	23	4	low	.	.	.	.	.	ENSG00000280441	ENSG00000141027	.	.	downstream	downstream	multimappers(1)	.	.	.
RPL14P1	Y_RNA(51090),AC093813.1(26234)	+/+	./+	12:62965818	7:156237313	exon	intergenic	translocation	0	0	0	20	0	low	.	.	.	.	.	ENSG00000139239	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
FP236383.3	RPL19	+/+	+/+	21:8441542	17:39200337	intron	5'UTR	translocation	0	0	0	19	0	low	.	.	\|Ribosomal_protein_L19e(100%)	.	.	ENSG00000280441	ENSG00000108298	.	.	downstream	upstream	multimappers(1)	.	.	.
FP236383.3	TAF4	+/+	-/-	21:8443085	20:61997654	intron	CDS	translocation	0	0	0	20	4	low	.	.	\|Transcription_initiation_factor_TFIID_component_TAF4_family(34%)	.	.	ENSG00000280441	ENSG00000130699	.	.	downstream	downstream	multimappers(1)	.	.	.
FP671120.4	RPL19	+/+	+/+	21:8214284	17:39200337	intron	5'UTR	translocation	0	1	0	17	0	low	.	.	\|Ribosomal_protein_L19e(100%)	.	.	ENSG00000278996	ENSG00000108298	.	.	downstream	upstream	min_support	.	.	.
FP236383.3	RPL19	+/+	+/+	21:8397322	17:39200337	intron	5'UTR	translocation	0	0	0	19	0	low	.	.	\|Ribosomal_protein_L19e(100%)	.	.	ENSG00000280441	ENSG00000108298	.	.	downstream	upstream	multimappers(1)	.	.	.
FP671120.4	CCT3	+/+	-/-	21:8209703	1:156318895	intron	CDS	translocation	0	1	0	12	5	low	.	.	\|TCP-1/cpn60_chaperonin_family(56%)	.	.	ENSG00000278996	ENSG00000163468	.	.	downstream	downstream	min_support	.	.	.
SON	SON	+/-	+/+	21:33551569	21:33551547	CDS	CDS	inversion/3'-3'	0	0	0	14	16	low	.	.	\|Arginine/Serine-Rich_protein_1(100%),G-patch_domain(100%),double_strand_RNA_binding_domain_from_DEAD_END_PROTEIN_1(100%)	.	.	ENSG00000159140	ENSG00000159140	.	.	upstream	upstream	hairpin(1)	.	.	.
LINC00486	GPR15	+/.	+/.	2:32916555	3:98532072	intron	CDS	translocation	0	0	0	489	5	low	.	.	.	.	.	ENSG00000230876	ENSG00000154165	.	.	downstream	upstream	low_entropy	.	.	.
FUS	RIC1	+/+	+/+	16:31184362	9:5696398	CDS	intron	translocation	1	0	0	6	0	low	.	.	\|RIC1(100%)	.	.	ENSG00000089280	ENSG00000107036	.	.	downstream	upstream	min_support	.	.	.
LINC00486	TULP4	+/+	+/+	2:32916554	6:158501883	intron	CDS	translocation	0	0	0	489	1	low	.	.	\|Tub_family(100%)	.	.	ENSG00000230876	ENSG00000130338	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
LINC00486	NFE2L1	+/.	+/.	2:32916556	17:48059483	intron	CDS	translocation	0	0	0	489	8	low	.	.	.	.	.	ENSG00000230876	ENSG00000082641	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	NFE2L1	+/.	+/.	2:32916554	17:48059483	intron	CDS	translocation	0	0	0	489	8	low	.	.	.	.	.	ENSG00000230876	ENSG00000082641	.	.	downstream	upstream	low_entropy	.	.	.
FP236383.3	BAG6	+/+	-/-	21:8445087	6:31651743	intron	CDS	translocation	0	0	0	22	7	low	.	.	\|BCL2-associated_athanogene_6(100%),Ubiquitin_family(100%)	.	.	ENSG00000280441	ENSG00000204463	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	NFE2L1	+/.	+/.	2:32916553	17:48059483	intron	CDS	translocation	0	0	0	489	8	low	.	.	.	.	.	ENSG00000230876	ENSG00000082641	.	.	downstream	upstream	low_entropy	.	.	.
ERG	ARHGEF10	-/-	+/+	21:38445410	8:1836682	CDS	intron	translocation	0	0	0	1	0	low	.	.	\|PH_domain(100%),RhoGEF_domain(100%),WD40_repeated_domain(100%)	.	.	ENSG00000157554	ENSG00000104728	.	.	upstream	upstream	mismatches(1)	.	.	.
NPIPB12	NPIPB11	-/-	-/-	16:29491529	16:29390002	CDS	CDS	deletion/read-through	1	0	0	8	2	low	.	.	Nuclear_pore_complex_interacting_protein_(NPIP)(36%)\|Nuclear_pore_complex_interacting_protein_(NPIP)(60%)	.	.	ENSG00000169203	ENSG00000254206	.	.	upstream	downstream	min_support	.	.	.
FP671120.2	FP236383.3	+/+	+/+	21:8208847	21:8400399	exon	intron	deletion/read-through	0	0	0	1	87	low	.	.	.	.	.	ENSG00000277437	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/+	+/+	21:8208360	21:8400399	intron	intron	deletion/read-through	0	0	0	0	87	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.5(66038),FP671120.4(27876)	FP236383.3	./+	+/+	21:8169744	21:8400399	intergenic	intron	deletion/read-through	0	0	0	1	87	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	RPS21	+/+	+/+	21:8443504	20:62387377	intron	CDS	translocation	0	0	0	36	0	low	.	.	\|Ribosomal_protein_S21e_(85%)	.	.	ENSG00000280441	ENSG00000171858	.	.	downstream	upstream	multimappers(1)	.	.	.
AC126755.3	AC126755.5	+/+	-/+	16:18316979	16:18320649	exon	intron	deletion/read-through/5'-5'	0	0	0	2	1	low	.	.	.	.	.	ENSG00000276484	ENSG00000285628	.	.	downstream	upstream	read_through(1)	.	.	.
FP236383.3	LSP1	+/+	+/+	21:8398650	11:1883524	intron	CDS	translocation	0	0	0	23	8	low	.	.	\|Caldesmon(100%)	.	.	ENSG00000280441	ENSG00000130592	.	.	downstream	upstream	multimappers(1)	.	.	.
5_8S_rRNA(95856),FP236383.3(27854)	FP236383.3	./+	+/+	21:8352789	21:8400399	intergenic	intron	deletion/read-through	0	0	0	2	87	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
ERBIN	ERBIN	+/-	+/+	5:66043118	5:66043093	CDS	CDS	inversion/3'-3'	0	0	0	1	1	low	.	.	\|PDZ_domain(100%)	.	.	ENSG00000112851	ENSG00000112851	.	.	upstream	upstream	hairpin(1)	.	.	.
KDM1A	PVT1	+/+	+/-	1:23055146	8:128066592	CDS	intron	translocation/5'-5'	0	0	0	7	0	low	.	.	SWIRM_domain(100%)\|	.	.	ENSG00000004487	ENSG00000249859	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	SYNRG	+/.	-/.	2:32916553	17:37586462	intron	CDS	translocation	0	0	0	489	8	low	.	.	.	.	.	ENSG00000230876	ENSG00000275066	.	.	downstream	downstream	low_entropy	.	.	.
IFI30	IFI30	+/+	+/+	19:18175647	19:18175146	CDS	CDS	duplication	0	1	0	4	6	low	.	.	Gamma_interferon_inducible_lysosomal_thiol_reductase_(GILT)(80%)\|Gamma_interferon_inducible_lysosomal_thiol_reductase_(GILT)(83%)	.	.	ENSG00000216490	ENSG00000216490	.	.	downstream	upstream	min_support	.	.	.
ZNF407	SLC45A4	+/+	-/+	18:74781477	8:141244027	CDS	intron	translocation/5'-5'	0	0	0	1	0	low	.	.	.	.	.	ENSG00000215421	ENSG00000022567	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	RAB21	+/.	+/.	2:32916556	12:71755060	intron	5'UTR	translocation	0	0	0	489	6	low	.	.	.	.	.	ENSG00000230876	ENSG00000080371	.	.	downstream	upstream	low_entropy	.	.	.
PPIAP22	FP671120.7	+/+	-/+	21:18857953	21:8255273	exon	exon	duplication/5'-5'	0	0	0	8	3	low	.	.	.	.	.	ENSG00000198618	ENSG00000281383	.	.	downstream	upstream	multimappers(1)	.	.	.
LAPTM5	LINC00486	-/.	+/.	1:30739849	2:32916556	CDS	intron	translocation	0	0	0	53	489	low	.	.	.	.	.	ENSG00000162511	ENSG00000230876	.	.	downstream	downstream	low_entropy	.	.	.
LINC00486	RAB21	+/.	+/.	2:32916555	12:71755060	intron	5'UTR	translocation	0	0	0	489	6	low	.	.	.	.	.	ENSG00000230876	ENSG00000080371	.	.	downstream	upstream	low_entropy	.	.	.
ADA	FP671120.4	-/-	+/+	20:44622829	21:8216098	CDS/splice-site	intron	translocation	0	0	0	7	56	low	.	.	Adenosine_deaminase(74%)\|	.	.	ENSG00000196839	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
ST13P6	ST13P6	+/+	+/+	8:133408252	8:133408184	exon	exon	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000225259	ENSG00000225259	.	.	downstream	upstream	hairpin(1)	.	.	.
HLA-C	GAS7	-/-	-/-	6:31271075	17:9912141	CDS/splice-site	3'UTR	translocation	0	0	0	74	0	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%)\|	.	.	ENSG00000204525	ENSG00000007237	.	.	upstream	downstream	duplicates(1),mismatches(2)	.	.	.
FP236383.3	POU4F2	+/+	+/+	21:8400415	4:146639327	intron	CDS	translocation	0	0	0	105	0	low	.	.	\|Homeodomain(100%),Pou_domain_-_N-terminal_to_homeobox_domain(100%)	.	.	ENSG00000280441	ENSG00000151615	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	POU4F2	+/+	+/+	21:8444649	4:146639326	intron	CDS	translocation	0	0	0	59	0	low	.	.	\|Homeodomain(100%),Pou_domain_-_N-terminal_to_homeobox_domain(100%)	.	.	ENSG00000280441	ENSG00000151615	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	FP236383.3	+/+	+/+	21:8444649	21:8444634	intron	intron	duplication/ITD	0	0	0	59	27	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	downstream	upstream	duplicates(9),low_entropy(1),merge_adjacent	.	.	.
ECRG4(243),UXS1(14910)	CCT7	./-	+/+	2:106078398	2:73244033	intergenic	CDS	inversion	0	0	0	0	0	low	.	.	\|TCP-1/cpn60_chaperonin_family(77%)	.	.	.	ENSG00000135624	.	.	upstream	upstream	mismatches(1)	.	.	.
RPL23AP1	RPL23AP12	-/+	+/-	6:29726931	21:39127773	exon	exon	translocation	0	1	0	0	1	low	.	.	.	.	.	ENSG00000239257	ENSG00000228861	.	.	downstream	downstream	min_support	.	.	.
FP671120.4	FP671120.4	+/+	+/+	21:8217379	21:8217364	intron	intron	duplication/ITD	0	0	0	83	59	low	.	.	.	.	.	ENSG00000278996	ENSG00000278996	.	.	downstream	upstream	duplicates(9),low_entropy(4)	.	.	.
FP236383.3	WNT4	+/+	-/+	21:8400415	1:22143140	intron	intron	translocation/5'-5'	0	0	0	105	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000162552	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	KIF18A	+/.	-/.	2:32916551	11:28069082	intron	intron	translocation	0	0	0	489	13	low	.	.	.	.	.	ENSG00000230876	ENSG00000121621	.	.	downstream	downstream	mismatches	.	.	.
FP236383.3	AL445253.1	+/+	+/+	21:8444649	1:22143139	intron	intron	translocation	0	0	0	59	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000285873	.	.	downstream	upstream	mismatches(1)	.	.	.
SNX13	SNX13	-/-	-/-	7:17868407	7:17897446	CDS/splice-site	CDS/splice-site	duplication/non-canonical_splicing	1	0	0	1	0	low	.	.	PXA_domain(100%)\|PXA_domain(100%),PX_domain(100%),Regulator_of_G_protein_signaling_domain(100%),Sorting_nexin_C_terminal(100%)	.	.	ENSG00000071189	ENSG00000071189	.	.	upstream	downstream	min_support	.	.	.
FP671120.4	BPTF	+/+	+/+	21:8218608	17:67945678	intron	CDS	translocation	1	0	0	33	0	low	.	.	\|Bromodomain(100%),PHD-finger(69%)	.	.	ENSG00000278996	ENSG00000171634	.	.	downstream	upstream	min_support	.	.	.
FP671120.4	WNT4	+/+	-/+	21:8217379	1:22143139	intron	intron	translocation/5'-5'	0	0	0	83	0	low	.	.	.	.	.	ENSG00000278996	ENSG00000162552	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	C1orf232	+/+	-/-	21:8400415	1:26164425	intron	CDS	translocation	0	0	0	105	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000282872	.	.	downstream	downstream	mismatches(1)	.	.	.
FP236383.3	FMR1	+/+	+/+	21:8444649	X:147912066	intron	5'UTR	translocation	0	0	0	59	0	low	.	.	\|Agenet_domain(100%),FMRP_KH0_domain(100%),Fragile_X-related_1_protein_core_C_terminal(100%),Fragile_X-related_mental_retardation_protein_C-terminal_region_2(100%),Fragile_X_mental_retardation_Tudor_domain(100%),KH_domain(100%)	.	.	ENSG00000280441	ENSG00000102081	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	C1orf232	+/+	-/-	21:8217379	1:26164426	intron	CDS	translocation	0	0	0	83	0	low	.	.	.	.	.	ENSG00000278996	ENSG00000282872	.	.	downstream	downstream	mismatches(1)	.	.	.
PFN1	FP671120.3(3942),FP671120.7(501)	-/-	./+	17:4946752	21:8254091	CDS	intergenic	translocation	0	0	0	42	14	low	.	.	Profilin(47%)\|	.	.	ENSG00000108518	.	.	.	upstream	upstream	multimappers(1)	.	.	.
FP236383.3	ZNF503	+/+	-/-	21:8400415	10:75401368	intron	CDS	translocation	0	0	0	105	0	low	.	.	\|NocA-like_zinc-finger_protein_1(100%)	.	.	ENSG00000280441	ENSG00000165655	.	.	downstream	downstream	mismatches(1)	.	.	.
FP671120.4	HDGF	+/+	-/-	21:8215428	1:156743873	intron	CDS	translocation	0	1	0	10	4	low	.	.	.	.	.	ENSG00000278996	ENSG00000143321	.	.	downstream	downstream	min_support	.	.	.
FP236383.3	ZNF503	+/+	-/-	21:8444649	10:75401369	intron	CDS	translocation	0	0	0	59	0	low	.	.	\|NocA-like_zinc-finger_protein_1(100%)	.	.	ENSG00000280441	ENSG00000165655	.	.	downstream	downstream	mismatches(1)	.	.	.
FP236383.3	DDAH1	+/+	-/+	21:8400415	1:85465067	intron	5'UTR	translocation/5'-5'	0	0	0	105	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000153904	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	DDAH1	+/+	-/+	21:8444649	1:85465066	intron	5'UTR	translocation/5'-5'	0	0	0	59	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000153904	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.4	DST	-/+	-/-	21:8394017	6:56474007	exon	exon	translocation/3'-3'	0	0	0	31	7	low	.	.	\|EF-hand_domain_pair(100%),Growth-Arrest-Specific_Protein_2_Domain(100%)	.	.	ENSG00000280614	ENSG00000151914	.	.	downstream	downstream	multimappers(1)	.	.	.
HLA-C	JAKMIP1	-/-	-/-	6:31270454	4:6130047	CDS	intron	translocation	0	0	0	16	0	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%),Immunoglobulin_C1-set_domain(1%)\|JAKMIP_CC3_domain(100%)	.	.	ENSG00000204525	ENSG00000152969	.	.	upstream	downstream	mismatches(2)	.	.	.
RNF213	FP236383.3	+/+	+/+	17:80289757	21:8438592	CDS	intron	translocation	0	0	0	12	6	low	.	.	.	.	.	ENSG00000173821	ENSG00000280441	.	.	downstream	upstream	multimappers(1)	.	.	.
FP671120.4	FMR1	+/+	+/+	21:8217379	X:147912066	intron	5'UTR	translocation	0	0	0	83	0	low	.	.	\|Agenet_domain(100%),FMRP_KH0_domain(100%),Fragile_X-related_1_protein_core_C_terminal(100%),Fragile_X-related_mental_retardation_protein_C-terminal_region_2(100%),Fragile_X_mental_retardation_Tudor_domain(100%),KH_domain(100%)	.	.	ENSG00000278996	ENSG00000102081	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	EIF4G3	+/+	-/-	21:8400415	1:21176607	intron	intron	translocation	0	0	0	105	0	low	.	.	\|MA3_domain(100%),MIF4G_domain(100%),eIF4-gamma/eIF5/eIF2-epsilon(100%)	.	.	ENSG00000280441	ENSG00000075151	.	.	downstream	downstream	mismatches(1)	.	.	.
FP671120.4	EIF4G3	+/+	-/-	21:8217379	1:21176608	intron	intron	translocation	0	0	0	83	0	low	.	.	\|MA3_domain(100%),MIF4G_domain(100%),eIF4-gamma/eIF5/eIF2-epsilon(100%)	.	.	ENSG00000278996	ENSG00000075151	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	RAI1	+/.	+/.	2:32916556	17:17797484	intron	CDS	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000108557	.	.	downstream	upstream	low_entropy	.	.	.
DGKZ	MT-RNR2	+/+	+/+	11:46377213	MT:1839	exon/splice-site	exon	translocation	0	0	0	1	.	low	.	.	Diacylglycerol_kinase_accessory_domain(100%),Diacylglycerol_kinase_catalytic_domain(100%),Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)(100%)\|	.	.	ENSG00000149091	ENSG00000210082	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
FP671120.4	FP671120.4	+/+	+/+	21:8217379	21:8217374	intron	intron	duplication/ITD	0	0	0	83	59	low	.	.	.	.	.	ENSG00000278996	ENSG00000278996	.	.	downstream	upstream	duplicates(3),hairpin(16),inconsistently_clipped(2),low_entropy(4)	.	.	.
FP236383.3	DGKD	+/+	+/-	21:8400415	2:233354580	intron	CDS	translocation/5'-5'	0	0	0	105	1	low	.	.	.	.	.	ENSG00000280441	ENSG00000077044	.	.	downstream	downstream	mismatches(1)	.	.	.
CR392039.1(1218),CR392039.3(7848)	NBEAL2	./+	+/+	21:8988648	3:47002080	intergenic	CDS	translocation	0	0	0	8	6	low	.	.	\|Beige/BEACH_domain(100%),Domain_of_unknown_function_(DUF4800)(77%),PH_domain_associated_with_Beige/BEACH(100%),WD_domain__G-beta_repeat(100%)	.	.	.	ENSG00000160796	.	.	downstream	upstream	multimappers(1)	.	.	.
FP236383.3	HOXB8	+/+	-/+	21:8444649	17:48614722	intron	5'UTR	translocation/5'-5'	0	0	0	59	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000120068	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.4	HOXB8	+/+	-/+	21:8217379	17:48614722	intron	5'UTR	translocation/5'-5'	0	0	0	83	0	low	.	.	.	.	.	ENSG00000278996	ENSG00000120068	.	.	downstream	upstream	mismatches(1)	.	.	.
ADGRE5	FMR1	+/-	+/+	19:14396547	X:147912048	intron	5'UTR	translocation/3'-3'	0	0	0	0	6	low	.	.	\|Agenet_domain(100%),FMRP_KH0_domain(100%),Fragile_X-related_1_protein_core_C_terminal(100%),Fragile_X-related_mental_retardation_protein_C-terminal_region_2(100%),Fragile_X_mental_retardation_Tudor_domain(100%),KH_domain(100%)	.	.	ENSG00000123146	ENSG00000102081	.	.	upstream	upstream	mismatches(1)	.	.	.
CHMP4B(18159),TPM3P2(39798)	FMR1	./-	+/+	20:33872525	X:147912048	intergenic	5'UTR	translocation	0	0	0	0	6	low	.	.	\|Agenet_domain(100%),FMRP_KH0_domain(100%),Fragile_X-related_1_protein_core_C_terminal(100%),Fragile_X-related_mental_retardation_protein_C-terminal_region_2(100%),Fragile_X_mental_retardation_Tudor_domain(100%),KH_domain(100%)	.	.	.	ENSG00000102081	.	.	upstream	upstream	mismatches(1)	.	.	.
SPACA6	FMR1	+/-	+/+	19:51690024	X:147912048	intron	5'UTR	translocation/3'-3'	0	0	0	0	6	low	.	.	\|Agenet_domain(100%),FMRP_KH0_domain(100%),Fragile_X-related_1_protein_core_C_terminal(100%),Fragile_X-related_mental_retardation_protein_C-terminal_region_2(100%),Fragile_X_mental_retardation_Tudor_domain(100%),KH_domain(100%)	.	.	ENSG00000182310	ENSG00000102081	.	.	upstream	upstream	mismatches(1)	.	.	.
EIF3C	EIF3CL	+/+	-/-	16:28723192	16:28399906	CDS	CDS	inversion	0	0	0	6	7	low	.	.	Eukaryotic_translation_initiation_factor_3_subunit_8_N-terminus(35%)\|Eukaryotic_translation_initiation_factor_3_subunit_8_N-terminus(67%),PCI_domain(100%)	.	.	ENSG00000184110	ENSG00000205609	.	.	downstream	downstream	mismatches(1)	.	.	.
FP671120.7	TRAPPC9	-/+	-/-	21:8255008	8:140300536	exon	CDS	translocation/3'-3'	0	0	0	12	4	low	.	.	\|Transport_protein_Trs120_or_TRAPPC9__TRAPP_II_complex_subunit(26%)	.	.	ENSG00000281383	ENSG00000167632	.	.	downstream	downstream	homopolymer(1)	.	.	.
AC074389.2(50659),ELFN1(16055)	FMR1	./+	+/+	7:1672064	X:147912048	intergenic	5'UTR	translocation	0	0	0	0	6	low	.	.	\|Agenet_domain(100%),FMRP_KH0_domain(100%),Fragile_X-related_1_protein_core_C_terminal(100%),Fragile_X-related_mental_retardation_protein_C-terminal_region_2(100%),Fragile_X_mental_retardation_Tudor_domain(100%),KH_domain(100%)	.	.	.	ENSG00000102081	.	.	downstream	upstream	mismatches(1)	.	.	.
5_8S_rRNA(1523),FP236383.3(122187)	RHOA	./+	-/-	21:8258456	3:49411872	intergenic	5'UTR	translocation	0	0	0	26	7	low	.	.	\|Ras_family(100%)	.	.	.	ENSG00000067560	.	.	downstream	downstream	multimappers(1)	.	.	.
LINC00486	ARHGDIA	+/.	-/.	2:32916555	17:81868406	intron	CDS	translocation	0	0	0	489	7	low	.	.	.	.	.	ENSG00000230876	ENSG00000141522	.	.	downstream	downstream	low_entropy	.	.	.
NPIPA3	NPIPA2	+/+	+/+	16:14724670	16:14765003	CDS	CDS/splice-site	deletion/read-through	0	0	0	2	3	low	.	.	Nuclear_pore_complex_interacting_protein_(NPIP)(73%)\|Nuclear_pore_complex_interacting_protein_(NPIP)(22%)	.	.	ENSG00000224712	ENSG00000254852	.	.	downstream	upstream	mismatches(1)	.	.	.
YTHDF2	LINC00486	+/.	+/.	1:28742889	2:32916556	CDS	intron	translocation	0	0	0	3	489	low	.	.	.	.	.	ENSG00000198492	ENSG00000230876	.	.	upstream	downstream	low_entropy	.	.	.
HLA-A	AL031674.1(67011),AL161945.1(74453)	+/+	./-	6:29943541	20:52766483	CDS/splice-site	intergenic	translocation	0	0	0	8	0	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%)\|	.	.	ENSG00000206503	.	.	.	downstream	downstream	mismatches(1)	.	.	.
FP236383.3	FP236383.3	+/+	+/+	21:8442105	21:8397809	intron	intron	duplication	0	1	0	407	119	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	downstream	upstream	min_support	.	.	.
NPIPB12	NPIPB11	-/-	-/-	16:29487047	16:29384289	CDS	CDS/splice-site	deletion/read-through	0	0	0	1	5	low	.	.	Nuclear_pore_complex_interacting_protein_(NPIP)(72%)\|Nuclear_pore_complex_interacting_protein_(NPIP)(22%)	.	.	ENSG00000169203	ENSG00000254206	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.4	POU4F2	+/+	+/+	21:8217379	4:146639326	intron	CDS	translocation	0	0	0	83	0	low	.	.	\|Homeodomain(100%),Pou_domain_-_N-terminal_to_homeobox_domain(100%)	.	.	ENSG00000278996	ENSG00000151615	.	.	downstream	upstream	mismatches(1)	.	.	.
CSNK2A3	CSNK2A3	-/-	-/-	11:11352740	11:11352822	CDS	CDS	duplication/ITD	0	0	0	1	2	low	.	.	Protein_kinase_domain(31%)\|Protein_kinase_domain(78%)	.	.	ENSG00000254598	ENSG00000254598	.	.	upstream	downstream	duplicates(1),hairpin(1)	.	.	.
SCAF8	FP671120.3(3932),FP671120.7(511)	+/+	./-	6:154832859	21:8254081	CDS	intergenic	translocation	0	0	0	6	17	low	.	.	CID_domain(100%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)\|	.	.	ENSG00000213079	.	.	.	downstream	downstream	multimappers(1)	.	.	.
CSNK2A3	AC023946.1	-/-	+/-	11:11352740	11:11352822	CDS	exon	duplication/5'-5'	0	0	0	1	2	low	.	.	Protein_kinase_domain(31%)\|	.	.	ENSG00000254598	ENSG00000255351	.	.	upstream	downstream	duplicates(1),hairpin(1)	.	.	.
LINC00486	SLC25A3	+/.	+/.	2:32916556	12:98594118	intron	CDS	translocation	0	0	0	489	10	low	.	.	.	.	.	ENSG00000230876	ENSG00000075415	.	.	downstream	upstream	mismatches	.	.	.
HLA-A	HUNK	+/+	+/+	6:29943541	21:32017581	CDS/splice-site	intron	translocation	0	0	0	8	0	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%)\|	.	.	ENSG00000206503	ENSG00000142149	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	CCDC14	+/+	-/-	21:8393140	3:123944969	intron	CDS	translocation	0	0	0	18	5	low	.	.	\|Coiled-coil_domain-containing_protein_14(58%)	.	.	ENSG00000280441	ENSG00000175455	.	.	downstream	downstream	mismatches(1)	.	.	.
AL583810.1(4957),CEP170B(1475)	PARK7	./-	+/+	14:104863793	1:7965337	intergenic	CDS	translocation	0	0	0	0	19	low	.	.	\|DJ-1/PfpI_family(82%)	.	.	.	ENSG00000116288	.	.	upstream	upstream	mismatches(1)	.	.	.
AC079150.1(14171),LINC01850(115371)	PDCD11	./+	+/+	2:153222334	10:103425192	intergenic	CDS	translocation	0	0	0	0	5	low	.	.	\|S1_RNA_binding_domain(23%),Suppressor_of_forked_protein_(Suf)(100%)	.	.	.	ENSG00000148843	.	.	downstream	upstream	homopolymer(1)	.	.	.
HS1BP3	PARK7	-/-	+/+	2:20575756	1:7965336	intron	CDS	translocation	0	0	0	0	19	low	.	.	PX_domain(100%)\|DJ-1/PfpI_family(82%)	.	.	ENSG00000118960	ENSG00000116288	.	.	upstream	upstream	mismatches(1)	.	.	.
P4HB	FP236383.3	-/-	+/+	17:81845154	21:8444119	CDS	intron	translocation	0	0	0	9	36	low	.	.	Thioredoxin(97%),Thioredoxin-like_domain(100%)\|	.	.	ENSG00000185624	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
PABPC1	PABPC1	-/-	-/-	8:100709629	8:100709613	CDS	CDS	deletion/read-through	0	0	0	15	14	low	.	.	RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(98%)\|Poly-adenylate_binding_protein__unique_domain(100%)	.	.	ENSG00000070756	ENSG00000070756	.	.	upstream	downstream	read_through(1)	.	.	.
BTAF1	BTAF1	+/+	+/+	10:91962668	10:91959278	CDS	exon	duplication	0	0	1	4	0	low	.	.	\|Domain_of_unknown_function_(DUF3535)(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%)	.	.	ENSG00000095564	ENSG00000095564	.	.	downstream	upstream	intragenic_exonic	.	.	.
LINC02428	PARK7	+/+	+/+	4:103306193	1:7965337	intron	CDS	translocation	0	0	0	0	19	low	.	.	\|DJ-1/PfpI_family(82%)	.	.	ENSG00000248740	ENSG00000116288	.	.	downstream	upstream	mismatches(1)	.	.	.
CCDC141	TTN	-/-	-/-	2:178834268	2:178817680	CDS	5'UTR/splice-site	deletion/read-through	0	0	0	2	1	low	.	.	Immunoglobulin_I-set_domain(100%),Spectrin_repeat(100%)\|Fibronectin_type_III_domain(100%),Immunoglobulin_I-set_domain(100%),PPAK_motif(100%),Protein_kinase_domain(100%),Titin_Z(100%),Tri-helix_bundle_domain(100%)	.	.	ENSG00000163492	ENSG00000155657	.	.	upstream	downstream	read_through(1)	.	.	.
ACADVL	ACADVL	+/+	+/+	17:7219928	17:7219914	5'UTR	5'UTR	duplication/ITD	0	0	0	1	1	low	.	.	\|Acyl-CoA_dehydrogenase__C-terminal_domain(100%),Acyl-CoA_dehydrogenase__N-terminal_domain(100%),Acyl-CoA_dehydrogenase__middle_domain(100%)	.	.	ENSG00000072778	ENSG00000072778	.	.	downstream	upstream	hairpin(1)	.	.	.
SLC35B1	FP671120.4	-/-	+/+	17:49707799	21:8215422	CDS	intron	translocation	0	1	0	1	13	low	.	.	.	.	.	ENSG00000121073	ENSG00000278996	.	.	upstream	upstream	min_support	.	.	.
SLC35B1	FP236383.3	-/-	+/+	17:49707799	21:8398456	CDS	intron	translocation	0	0	0	1	12	low	.	.	.	.	.	ENSG00000121073	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
SLC35B1	5_8S_rRNA(2718),FP236383.3(120992)	-/-	./+	17:49707799	21:8259651	CDS	intergenic	translocation	0	0	0	1	12	low	.	.	.	.	.	ENSG00000121073	.	.	.	upstream	upstream	multimappers(1)	.	.	.
PPAN-P2RY11	FP671120.7	+/+	-/+	19:10108036	21:8255098	CDS	exon	translocation/5'-5'	0	1	0	2	20	low	.	.	Brix_domain(39%)\|	.	.	ENSG00000243207	ENSG00000281383	.	.	downstream	upstream	min_support	.	.	.
NCOR2	NCOR2	-/-	-/-	12:124402513	12:124402515	CDS	CDS	duplication/ITD	0	0	0	6	7	low	.	.	G-protein_pathway_suppressor_2-interacting_domain(100%)\|Myb-like_DNA-binding_domain(100%)	.	.	ENSG00000196498	ENSG00000196498	.	.	upstream	downstream	low_entropy(1)	.	.	.
CPSF6	CPSF6	+/+	+/+	12:69259062	12:69259033	CDS	CDS	duplication/ITD	0	0	0	4	4	low	.	.	RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)\|	.	.	ENSG00000111605	ENSG00000111605	.	.	downstream	upstream	duplicates(1),hairpin(1)	.	.	.
LINC00486	UBR5	+/.	-/.	2:32916556	8:102305094	intron	CDS	translocation	0	0	0	489	0	low	.	.	.	.	.	ENSG00000230876	ENSG00000104517	.	.	downstream	downstream	low_entropy	.	.	.
LINC00486	UBR5	+/.	-/.	2:32916555	8:102305094	intron	CDS	translocation	0	0	0	489	0	low	.	.	.	.	.	ENSG00000230876	ENSG00000104517	.	.	downstream	downstream	low_entropy	.	.	.
UPK3BL1	POLR2J3	-/-	-/-	7:102637576	7:102538474	CDS	3'UTR	deletion/read-through	0	0	1	3	3	low	.	.	.	.	.	ENSG00000267368	ENSG00000168255	.	.	upstream	downstream	min_support	.	.	.
HLA-C	FO393400.1	-/-	-/+	6:31271075	20:32706859	CDS/splice-site	intron	translocation/5'-5'	0	0	0	74	0	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%)\|	.	.	ENSG00000204525	ENSG00000285382	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00486	ITPR3	+/.	+/.	2:32916555	6:33684633	intron	CDS	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000096433	.	.	downstream	upstream	low_entropy	.	.	.
FP236383.3	TBCK	+/-	-/-	21:8400072	4:106308966	intron	5'UTR	translocation/3'-3'	0	0	0	14	4	low	.	.	\|Protein_kinase_domain(100%),Rab-GTPase-TBC_domain(100%),Rhodanese-like_domain(100%)	.	.	ENSG00000280441	ENSG00000145348	.	.	upstream	downstream	multimappers(1)	.	.	.
IGLV2-14	IGLJ3	+/+	+/+	22:22759210	22:22904988	CDS	CDS	deletion/read-through	0	1	0	1	13	low	.	.	.	.	.	ENSG00000211666	ENSG00000211678	.	.	downstream	upstream	min_support	.	.	.
FP236383.3	TBCK	+/-	-/-	21:8444307	4:106308966	intron	5'UTR	translocation/3'-3'	0	0	0	12	4	low	.	.	\|Protein_kinase_domain(100%),Rab-GTPase-TBC_domain(100%),Rhodanese-like_domain(100%)	.	.	ENSG00000280441	ENSG00000145348	.	.	upstream	downstream	multimappers(1)	.	.	.
5_8S_rRNA(3781),FP236383.3(119929)	SYNE1	./+	-/-	21:8260714	6:152234682	intergenic	CDS	translocation	0	0	0	13	4	low	.	.	\|Nuclear_envelope_localisation_domain(100%),Spectrin_repeat(75%)	.	.	.	ENSG00000131018	.	.	downstream	downstream	multimappers(1)	.	.	.
FP236383.3	BPTF	+/+	+/+	21:8401646	17:67945678	intron	CDS	translocation	0	0	0	31	0	low	.	.	\|Bromodomain(100%),PHD-finger(69%)	.	.	ENSG00000280441	ENSG00000171634	.	.	downstream	upstream	multimappers(1)	.	.	.
FP671120.4	FP671120.4	+/+	+/+	21:8216059	21:8216051	intron	intron	duplication/ITD	0	0	0	72	54	low	.	.	.	.	.	ENSG00000278996	ENSG00000278996	.	.	downstream	upstream	low_entropy(1)	.	.	.
FP236383.3	DAZAP1	+/+	+/+	21:8400770	19:1407668	intron	5'UTR	translocation	0	0	0	12	5	low	.	.	\|RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)	.	.	ENSG00000280441	ENSG00000071626	.	.	downstream	upstream	multimappers(1)	.	.	.
FP236383.3	BPTF	+/+	+/+	21:8445878	17:67945678	intron	CDS	translocation	0	0	0	28	0	low	.	.	\|Bromodomain(100%),PHD-finger(69%)	.	.	ENSG00000280441	ENSG00000171634	.	.	downstream	upstream	multimappers(1)	.	.	.
NRG1	AFDN	+/-	+/+	8:32005020	6:167872267	intron	CDS	translocation/3'-3'	0	0	0	0	7	low	.	.	\|DIL_domain(100%),FHA_domain(100%),PDZ_domain(100%),Ras_association_(RalGDS/AF-6)_domain(51%)	.	.	ENSG00000157168	ENSG00000130396	.	.	upstream	upstream	mismatches(1)	.	.	.
AC007403.1(1047),LINC01828(43433)	AFDN	./+	+/+	2:67043013	6:167872267	intergenic	CDS	translocation	0	0	0	0	7	low	.	.	\|DIL_domain(100%),FHA_domain(100%),PDZ_domain(100%),Ras_association_(RalGDS/AF-6)_domain(51%)	.	.	.	ENSG00000130396	.	.	downstream	upstream	mismatches(1)	.	.	.
PRDM1	FP236383.5	+/+	-/+	6:106107314	21:8437868	CDS	exon	translocation/5'-5'	0	0	0	4	31	low	.	.	C2H2-type_zinc_finger(100%),SET_domain(100%),Zinc_finger__C2H2_type(100%)\|	.	.	ENSG00000057657	ENSG00000281181	.	.	downstream	upstream	multimappers(1)	.	.	.
PFN1	FP236383.3	-/-	+/+	17:4946752	21:8392916	CDS	intron	translocation	0	0	0	42	20	low	.	.	Profilin(47%)\|	.	.	ENSG00000108518	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
AC021506.2(73483),AC090457.1(6631)	ANKHD1-EIF4EBP3	./+	+/+	18:76001487	5:140529416	intergenic	CDS	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000254996	.	.	downstream	upstream	mismatches(1)	.	.	.
MBD5	AFDN	+/+	+/+	2:148315027	6:167872267	intron	CDS	translocation	0	0	0	0	7	low	.	.	\|DIL_domain(100%),FHA_domain(100%),PDZ_domain(100%),Ras_association_(RalGDS/AF-6)_domain(51%)	.	.	ENSG00000204406	ENSG00000130396	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	AP5Z1	+/.	+/.	2:32916555	7:4784309	intron	CDS	translocation	0	0	0	489	4	low	.	.	.	.	.	ENSG00000230876	ENSG00000242802	.	.	downstream	upstream	low_entropy	.	.	.
LINC01754(56979),RPL35AP(8908)	AFDN	./+	+/+	20:47469306	6:167872270	intergenic	CDS	translocation	0	0	0	0	7	low	.	.	\|DIL_domain(100%),FHA_domain(100%),PDZ_domain(100%),Ras_association_(RalGDS/AF-6)_domain(51%)	.	.	.	ENSG00000130396	.	.	downstream	upstream	mismatches(1)	.	.	.
FAM83F	MTA1	+/+	+/+	22:40003402	14:105469764	intron	exon	translocation	0	0	0	0	1	low	.	.	FAM83_A-H(52%)\|MTA_R1_domain(29%)	.	.	ENSG00000133477	ENSG00000182979	.	.	downstream	upstream	mismatches(1)	.	.	.
C4orf50	SART3	-/-	-/-	4:5946697	12:108530248	intron	CDS	translocation	0	1	0	0	3	low	.	.	Protein_of_unknown_function_(DUF4527)(100%)\|LSM-interacting_associated_unstructured_(100%),Lsm_interaction_motif(100%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)	.	.	ENSG00000181215	ENSG00000075856	.	.	upstream	downstream	min_support	.	.	.
HLA-DQA1	HLA-DQA2	+/+	+/+	6:32642033	6:32745884	CDS	CDS	deletion/read-through	0	0	0	8	4	low	.	.	Class_II_histocompatibility_antigen__alpha_domain(100%),Immunoglobulin_C1-set_domain(20%)\|Immunoglobulin_C1-set_domain(66%)	.	.	ENSG00000196735	ENSG00000237541	.	.	downstream	upstream	mismatches	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8216161	21:8443324	intron	intron	deletion/read-through	0	0	0	61	41	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	mismatches	.	.	.
GATAD2A	FP671120.4	+/+	+/+	19:19496062	21:8214120	CDS	intron	translocation	0	1	0	3	18	low	.	.	Coiled-coil_and_interaction_region_of_P66A_and_P66B_with_MBD2(100%)\|	.	.	ENSG00000167491	ENSG00000278996	.	.	downstream	upstream	min_support	.	.	.
LRRC37A	LRRC37A2	+/+	+/+	17:46330501	17:46548322	CDS	CDS	deletion/read-through	0	0	1	6	6	low	.	.	Leucine-rich_repeat-containing_protein_37_family(100%),Leucine_rich_repeat(100%)\|LRRC37A/B_like_protein_1_C-terminal_domain(100%)	.	.	ENSG00000176681	ENSG00000238083	.	.	downstream	upstream	min_support	.	.	.
NPIPB12	NPIPB11	-/-	-/-	16:29491865	16:29390327	CDS	CDS	deletion/read-through	0	0	1	2	7	low	.	.	Nuclear_pore_complex_interacting_protein_(NPIP)(16%)\|Nuclear_pore_complex_interacting_protein_(NPIP)(83%)	.	.	ENSG00000169203	ENSG00000254206	.	.	upstream	downstream	min_support	.	.	.
FP236383.3	DEPDC5	+/+	+/+	21:8438751	22:31870613	intron	CDS	translocation	0	0	0	3	0	low	.	.	\|Domain_found_in_Dishevelled__Egl-10__and_Pleckstrin_(DEP)(100%)	.	.	ENSG00000280441	ENSG00000100150	.	.	downstream	upstream	multimappers(1)	.	.	.
RACK1	FP671120.4	-/-	+/+	5:181238098	21:8215775	intron	intron	translocation	1	0	0	24	23	low	.	.	WD_domain__G-beta_repeat(89%)\|	.	.	ENSG00000204628	ENSG00000278996	.	.	upstream	upstream	in_vitro	.	.	.
FP671120.7(157),5_8S_rRNA(1110)	H2AC18	./+	-/-	21:8255671	1:149842668	intergenic	CDS	translocation	0	0	0	2	70	low	.	.	\|C-terminus_of_histone_H2A(100%),Core_histone_H2A/H2B/H3/H4(92%)	.	.	.	ENSG00000203812	.	.	downstream	downstream	multimappers(1)	.	.	.
FER1L6-AS2(511),AC090921.1(20638)	ATP5MC2	./+	-/-	8:124172033	12:53672670	intergenic	exon	translocation	0	0	0	0	4	low	.	.	\|ATP_synthase_subunit_C(100%)	.	.	.	ENSG00000135390	.	.	downstream	downstream	homopolymer(1)	.	.	.
LINC00486	SERINC1	+/+	-/-	2:32916551	6:122456598	intron	CDS	translocation	0	0	0	489	15	low	.	.	\|Serine_incorporator_(Serinc)(84%)	.	.	ENSG00000230876	ENSG00000111897	.	.	downstream	downstream	homopolymer(1)	.	.	.
RACK1	FP236383.3	-/-	+/+	5:181238098	21:8398809	intron	intron	translocation	0	0	0	24	23	low	.	.	WD_domain__G-beta_repeat(89%)\|	.	.	ENSG00000204628	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
RACK1	5_8S_rRNA(3071),FP236383.3(120639)	-/-	./+	5:181238098	21:8260004	intron	intergenic	translocation	0	0	0	24	22	low	.	.	WD_domain__G-beta_repeat(89%)\|	.	.	ENSG00000204628	.	.	.	upstream	upstream	multimappers(1)	.	.	.
RACK1	FP236383.3	-/-	+/+	5:181238098	21:8443038	intron	intron	translocation	0	0	0	24	21	low	.	.	WD_domain__G-beta_repeat(89%)\|	.	.	ENSG00000204628	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
FP671120.4	UBE4B	+/+	+/+	21:8216751	1:10161204	intron	CDS	translocation	0	0	0	20	4	low	.	.	\|U-box_domain(100%),Ubiquitin_elongating_factor_core(27%)	.	.	ENSG00000278996	ENSG00000130939	.	.	downstream	upstream	multimappers(1)	.	.	.
FP236383.3	ZFP36L1	+/+	-/-	21:8441497	14:68793050	intron	CDS	translocation	0	0	0	32	7	low	.	.	\|Tis11B_like_protein__N_terminus(100%),Zinc_finger_C-x8-C-x5-C-x3-H_type_(and_similar)(100%)	.	.	ENSG00000280441	ENSG00000185650	.	.	downstream	downstream	multimappers(1)	.	.	.
FP236383.3	UBE4B	+/+	+/+	21:8399785	1:10161204	intron	CDS	translocation	0	0	1	18	4	low	.	.	\|U-box_domain(100%),Ubiquitin_elongating_factor_core(27%)	.	.	ENSG00000280441	ENSG00000130939	.	.	downstream	upstream	min_support	.	.	.
FP236383.3	UBE4B	+/+	+/+	21:8444020	1:10161204	intron	CDS	translocation	0	0	1	15	4	low	.	.	\|U-box_domain(100%),Ubiquitin_elongating_factor_core(27%)	.	.	ENSG00000280441	ENSG00000130939	.	.	downstream	upstream	min_support,multimappers(1)	.	.	.
FP671120.4	ASH1L	+/+	-/-	21:8217812	1:155479738	intron	CDS	translocation	0	1	0	23	4	low	.	.	\|AWS_domain(100%),BAH_domain(100%),Bromodomain(100%),SET_domain(100%)	.	.	ENSG00000278996	ENSG00000116539	.	.	downstream	downstream	min_support	.	.	.
FP671120.7	SLC25A6	-/+	-/-	21:8254881	X:1389686	exon	CDS	translocation/3'-3'	0	0	0	25	37	low	.	.	\|Mitochondrial_carrier_protein(83%)	.	.	ENSG00000281383	ENSG00000169100	.	.	downstream	downstream	multimappers(1)	.	.	.
AC087633.2	NOP53	+/-	+/+	15:94856109	19:47751551	exon	CDS	translocation/3'-3'	0	1	0	0	8	low	.	.	\|Nop53_(60S_ribosomal_biogenesis)(58%)	.	.	ENSG00000277654	ENSG00000105373	.	.	upstream	upstream	min_support	.	.	.
HNRNPA1P7	HNRNPA1	-/-	+/+	18:32412679	12:54281812	exon	CDS	translocation	0	1	0	0	32	low	.	.	\|Nuclear_factor_hnRNPA1(100%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(73%)	.	.	ENSG00000215492	ENSG00000135486	.	.	upstream	upstream	min_support	.	.	.
KAT6B	AC004593.2	+/+	+/-	10:75028944	7:29302307	CDS	intron	translocation/5'-5'	0	0	0	1	0	low	.	.	MOZ/SAS_family(100%),MYST_family_zinc_finger_domain(100%),PHD-finger(100%),linker_histone_H1_and_H5_family(100%)\|	.	.	ENSG00000156650	ENSG00000285162	.	.	downstream	downstream	mismatches(1)	.	.	.
FP236383.3	FP236383.3	+/+	+/+	21:8443395	21:8443331	intron	intron	duplication/ITD	0	0	0	62	41	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	downstream	upstream	low_entropy(2)	.	.	.
HSP90AA1	HSP90AA1	-/-	-/-	14:102084865	14:102084981	CDS	CDS	duplication	0	0	0	13	17	low	.	.	Histidine_kinase-__DNA_gyrase_B-__and_HSP90-like_ATPase(100%),Hsp90_protein(13%)\|Hsp90_protein(93%)	.	.	ENSG00000080824	ENSG00000080824	.	.	upstream	downstream	hairpin(1)	.	.	.
MARS1	FP671120.7	+/-	-/+	12:57475473	21:8254876	exon	exon	translocation	0	0	0	0	24	low	.	.	.	.	.	ENSG00000166986	ENSG00000281383	.	.	upstream	upstream	multimappers(1)	.	.	.
LINC00486	MDN1	+/.	-/.	2:32916555	6:89772648	intron	CDS	translocation	0	0	0	489	9	low	.	.	.	.	.	ENSG00000230876	ENSG00000112159	.	.	downstream	downstream	mismatches	.	.	.
MARS1	FP236383.5	+/-	-/+	12:57475473	21:8437913	exon	exon	translocation	0	0	0	0	21	low	.	.	.	.	.	ENSG00000166986	ENSG00000281181	.	.	upstream	upstream	multimappers(1)	.	.	.
LINC00486	5_8S_rRNA(2945),FP236383.3(120765)	+/.	./.	2:32916555	21:8259878	intron	intergenic	translocation	0	0	0	489	20	low	.	.	.	.	.	ENSG00000230876	.	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	GOLPH3	+/.	-/.	2:32916555	5:32174026	intron	CDS	translocation	0	0	0	489	4	low	.	.	.	.	.	ENSG00000230876	ENSG00000113384	.	.	downstream	downstream	low_entropy	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916555	21:8441944	intron	intron	translocation	0	0	0	489	418	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	downstream	upstream	low_entropy	.	.	.
MARS1	FP236383.4	+/-	-/+	12:57475473	21:8393703	exon	exon	translocation	0	0	0	0	22	low	.	.	.	.	.	ENSG00000166986	ENSG00000280614	.	.	upstream	upstream	multimappers(1)	.	.	.
FP236383.3	NCOR1	+/+	-/-	21:8443084	17:16048955	intron	CDS	translocation	0	0	1	20	4	low	.	.	.	.	.	ENSG00000280441	ENSG00000141027	.	.	downstream	downstream	min_support,multimappers(1)	.	.	.
PHC3	PHC3	-/-	-/-	3:170128340	3:170178938	CDS/splice-site	CDS/splice-site	duplication/non-canonical_splicing	1	0	0	1	0	low	.	.	\|SAM_domain_(Sterile_alpha_motif)(100%)	.	.	ENSG00000173889	ENSG00000173889	.	.	upstream	downstream	min_support	.	.	.
HSP90B1	HSP90B1	+/+	+/+	12:103947396	12:103947316	CDS	CDS	duplication/ITD	0	0	0	21	24	low	.	.	Histidine_kinase-__DNA_gyrase_B-__and_HSP90-like_ATPase(100%),Hsp90_protein(100%)\|Hsp90_protein(3%)	.	.	ENSG00000166598	ENSG00000166598	.	.	downstream	upstream	duplicates(1),hairpin(1)	.	.	.
LINC00486	INTS1	+/.	-/.	2:32916556	7:1479662	intron	CDS	translocation	0	0	0	489	4	low	.	.	.	.	.	ENSG00000230876	ENSG00000164880	.	.	downstream	downstream	low_entropy	.	.	.
FANCL	FANCL	-/-	-/-	2:58221942	2:58232112	CDS/splice-site	CDS/splice-site	duplication/non-canonical_splicing	1	0	0	1	1	low	.	.	FANCL_UBC-like_domain_1(100%),FANCL_UBC-like_domain_2(19%)\|FANCL_C-terminal_domain(100%),FANCL_UBC-like_domain_1(53%),FANCL_UBC-like_domain_2(99%),FANCL_UBC-like_domain_3(100%)	.	.	ENSG00000115392	ENSG00000115392	.	.	upstream	downstream	min_support	.	.	.
FP236383.5	PMVK	-/+	-/-	21:8438401	1:154929160	exon	CDS	translocation/3'-3'	0	0	0	24	4	low	.	.	\|Phosphomevalonate_kinase_(58%)	.	.	ENSG00000281181	ENSG00000163344	.	.	downstream	downstream	multimappers(1)	.	.	.
DNHD1	DNHD1	+/-	+/-	11:6545243	11:6545305	CDS	CDS	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000179532	ENSG00000179532	.	.	upstream	downstream	hairpin(1)	.	.	.
ZNF713	FP236383.3	+/-	+/-	7:55887600	21:8444634	5'UTR	intron	translocation	0	0	0	1	46	low	.	.	.	.	.	ENSG00000178665	ENSG00000280441	.	.	upstream	downstream	mismatches(1)	.	.	.
P4HB	FP236383.3	-/-	+/+	17:81845154	21:8399884	CDS	intron	translocation	0	0	0	9	23	low	.	.	Thioredoxin(97%),Thioredoxin-like_domain(100%)\|	.	.	ENSG00000185624	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	FP236383.3	+/-	+/+	21:8436432	21:8442037	intron	intron	inversion/3'-3'	0	0	0	6	527	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
LINC00486	5_8S_rRNA(2018),FP236383.3(121692)	+/.	./.	2:32916555	21:8258951	intron	intergenic	translocation	0	0	0	489	511	low	.	.	.	.	.	ENSG00000230876	.	.	.	downstream	upstream	low_entropy	.	.	.
FP671120.3(4166),FP671120.7(277)	CCDC14	./+	-/-	21:8254315	3:123944969	intergenic	CDS	translocation	0	0	0	4	5	low	.	.	\|Coiled-coil_domain-containing_protein_14(58%)	.	.	.	ENSG00000175455	.	.	downstream	downstream	mismatches(1)	.	.	.
CR392039.1(295),CR392039.3(8771)	5_8S_rRNA(2069),FP236383.3(121641)	./-	./+	21:8987725	21:8259002	intergenic	intergenic	inversion	0	0	0	4	491	low	.	.	.	.	.	.	.	.	.	upstream	upstream	multimappers(1)	.	.	.
FP236383.3	CCDC14	+/+	-/-	21:8437350	3:123944969	intron	CDS	translocation	0	0	0	17	5	low	.	.	\|Coiled-coil_domain-containing_protein_14(58%)	.	.	ENSG00000280441	ENSG00000175455	.	.	downstream	downstream	mismatches(1)	.	.	.
FP671120.4	CCDC14	+/+	-/-	21:8210105	3:123944969	intron	CDS	translocation	0	0	0	15	5	low	.	.	\|Coiled-coil_domain-containing_protein_14(58%)	.	.	ENSG00000278996	ENSG00000175455	.	.	downstream	downstream	mismatches(1)	.	.	.
UBB	FP671120.4	+/+	+/+	17:16381987	21:8214346	CDS	intron	translocation	1	0	0	14	5	low	.	.	Ubiquitin_family(11%)\|	.	.	ENSG00000170315	ENSG00000278996	.	.	downstream	upstream	min_support	.	.	.
HLA-C	NRG1-IT1	-/-	+/-	6:31271075	8:32073179	CDS/splice-site	intron	translocation/5'-5'	2	0	0	74	0	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%)\|	.	.	ENSG00000204525	ENSG00000253974	.	.	upstream	downstream	blacklist	.	.	.
CR392039.1(1216),CR392039.3(7850)	CCDC14	./+	-/-	21:8988646	3:123944969	intergenic	CDS	translocation	0	0	0	8	5	low	.	.	\|Coiled-coil_domain-containing_protein_14(58%)	.	.	.	ENSG00000175455	.	.	downstream	downstream	mismatches(1)	.	.	.
AC007216.5	NPIPB2	+/+	-/+	16:11926304	16:11930080	exon	intron	deletion/read-through/5'-5'	0	0	0	1	1	low	.	.	.	.	.	ENSG00000277458	ENSG00000234719	.	.	downstream	upstream	read_through(1)	.	.	.
FP671120.4	BTG2	+/+	+/+	21:8216616	1:203305572	intron	5'UTR	translocation	0	1	0	12	10	low	.	.	\|BTG_family(100%)	.	.	ENSG00000278996	ENSG00000159388	.	.	downstream	upstream	min_support	.	.	.
LINC00273(658),RNA5-8SP2(2265)	TRRAP	./+	+/+	16:34160694	7:98949509	intergenic	CDS	translocation	0	1	0	0	8	low	.	.	\|FAT_domain(100%),Phosphatidylinositol_3-_and_4-kinase(100%)	.	.	.	ENSG00000196367	.	.	downstream	upstream	min_support	.	.	.
FP671120.4	SYNE1	+/+	-/-	21:8216485	6:152234682	intron	CDS	translocation	0	1	0	10	4	low	.	.	\|Nuclear_envelope_localisation_domain(100%),Spectrin_repeat(75%)	.	.	ENSG00000278996	ENSG00000131018	.	.	downstream	downstream	min_support	.	.	.
FP236383.3	IRAK1	+/+	-/-	21:8445339	X:154019862	intron	5'UTR	translocation	0	0	0	5	5	low	.	.	\|Death_domain(100%),Protein_kinase_domain(100%)	.	.	ENSG00000280441	ENSG00000184216	.	.	downstream	downstream	multimappers(1)	.	.	.
ZFYVE26	STAT1	-/-	-/+	14:67754071	2:191008376	CDS/splice-site	intron	translocation/5'-5'	0	0	0	2	0	low	.	.	FYVE_zinc_finger(100%)\|	.	.	ENSG00000072121	ENSG00000115415	.	.	upstream	upstream	mismatches(1)	.	.	.
FP236383.3	ETNK1	+/+	+/+	21:8393360	12:22625558	intron	CDS	translocation	0	0	0	8	4	low	.	.	\|Choline/ethanolamine_kinase(100%)	.	.	ENSG00000280441	ENSG00000139163	.	.	downstream	upstream	multimappers(1)	.	.	.
RPS24	RPS24	+/+	+/+	10:78037299	10:78037225	CDS	CDS	duplication/ITD	0	0	0	23	27	low	.	.	Ribosomal_protein_S24e(100%)\|	.	.	ENSG00000138326	ENSG00000138326	.	.	downstream	upstream	duplicates(1),hairpin(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916556	21:8443331	intron	intron	translocation	0	0	0	489	41	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	downstream	upstream	low_entropy	.	.	.
AC136619.1	NPIPA7	-/-	+/-	16:16394912	16:16391242	exon	intron	deletion/read-through/5'-5'	0	0	0	2	1	low	.	.	.	.	.	ENSG00000261181	ENSG00000214967	.	.	upstream	downstream	read_through(1)	.	.	.
NPIPB13	LINC00486	-/-	+/-	16:30227063	2:32916555	CDS	intron	translocation/5'-5'	0	0	0	4	489	low	.	.	Nuclear_pore_complex_interacting_protein_(NPIP)(68%)\|	.	.	ENSG00000198064	ENSG00000230876	.	.	upstream	downstream	low_entropy	.	.	.
NPIPB5	LINC00486	+/+	+/-	16:22532366	2:32916556	CDS	intron	translocation/5'-5'	0	0	0	5	489	low	.	.	Nuclear_pore_complex_interacting_protein_(NPIP)(68%)\|	.	.	ENSG00000243716	ENSG00000230876	.	.	downstream	downstream	low_entropy	.	.	.
NPIPB3	LINC00486	-/-	+/-	16:21406553	2:32916556	CDS	intron	translocation/5'-5'	0	0	0	5	489	low	.	.	Nuclear_pore_complex_interacting_protein_(NPIP)(66%)\|	.	.	ENSG00000169246	ENSG00000230876	.	.	upstream	downstream	low_entropy	.	.	.
LINC02139(19845),GSE1(237)	FP671120.4	./+	+/-	16:85169288	21:8217364	intergenic	intron	translocation	0	0	0	0	83	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	downstream	mismatches(1)	.	.	.
NPIPB3	LINC00486	-/-	+/-	16:21406553	2:32916555	CDS	intron	translocation/5'-5'	0	0	0	5	489	low	.	.	Nuclear_pore_complex_interacting_protein_(NPIP)(66%)\|	.	.	ENSG00000169246	ENSG00000230876	.	.	upstream	downstream	low_entropy	.	.	.
NPIPB4	LINC00486	-/-	+/-	16:21839004	2:32916556	CDS	intron	translocation/5'-5'	0	0	0	4	489	low	.	.	Nuclear_pore_complex_interacting_protein_(NPIP)(68%)\|	.	.	ENSG00000185864	ENSG00000230876	.	.	upstream	downstream	low_entropy	.	.	.
LINC00486	POLD4	+/.	-/.	2:32916555	11:67352771	intron	CDS	translocation	0	0	0	489	5	low	.	.	.	.	.	ENSG00000230876	ENSG00000175482	.	.	downstream	downstream	low_entropy	.	.	.
SRCAP	SRCAP	+/+	+/+	16:30709882	16:30709898	CDS	CDS/splice-site	deletion/read-through	0	0	0	3	1	low	.	.	HSA_domain(100%)\|Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%)	.	.	ENSG00000080603	ENSG00000080603	.	.	downstream	upstream	read_through(1)	.	.	.
FP671120.4	5_8S_rRNA(2025),FP236383.3(121685)	+/+	./+	21:8217377	21:8258958	intron	intergenic	deletion/read-through	0	0	0	83	511	low	.	.	.	.	.	ENSG00000278996	.	.	.	downstream	upstream	mismatches(1)	.	.	.
ADAR	FP236383.3	-/-	+/+	1:154601825	21:8443893	CDS	intron	translocation	0	0	0	5	14	low	.	.	Adenosine_deaminase_z-alpha_domain(50%)\|	.	.	ENSG00000160710	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
FP671120.4	FP236383.3	+/.	+/.	21:8217221	21:8400183	intron	intron	deletion/read-through	0	0	0	10	23	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	mismatches	.	.	.
LINC00486	SMPD4BP	+/.	+/.	2:32916372	2:131519203	intron	exon	deletion	0	0	0	50	1	low	.	.	.	.	.	ENSG00000230876	ENSG00000152117	.	.	downstream	upstream	mismatches	.	.	.
FER1L6-AS2(517),AC090921.1(20632)	ATP5MC2	./+	-/-	8:124172039	12:53672667	intergenic	exon	translocation	0	0	0	0	4	low	.	.	\|ATP_synthase_subunit_C(100%)	.	.	.	ENSG00000135390	.	.	downstream	downstream	mismatches(1)	.	.	.
FP671120.4	DEPDC5	+/+	+/+	21:8211506	22:31870613	intron	CDS	translocation	1	0	0	1	0	low	.	.	\|Domain_found_in_Dishevelled__Egl-10__and_Pleckstrin_(DEP)(100%)	.	.	ENSG00000278996	ENSG00000100150	.	.	downstream	upstream	min_support	.	.	.
LINC00486	5_8S_rRNA(3363),FP236383.3(120347)	+/.	./.	2:32916411	21:8260296	intron	intergenic	translocation	0	0	0	219	68	low	.	.	.	.	.	ENSG00000230876	.	.	.	upstream	upstream	mismatches	.	.	.
MGRN1	FP236383.3	+/+	+/+	16:4681630	21:8437370	CDS	intron	translocation	0	0	0	8	10	low	.	.	Zinc_finger__C3HC4_type_(RING_finger)(100%)\|	.	.	ENSG00000102858	ENSG00000280441	.	.	downstream	upstream	multimappers(1)	.	.	.
ACTG1	ACTBP11	-/-	-/-	17:81512006	1:223864661	CDS	exon	translocation	0	0	0	53	0	low	.	.	Actin(22%)\|	.	.	ENSG00000184009	ENSG00000188460	.	.	upstream	downstream	mismatches(1)	.	.	.
FP671120.4	FP236383.3	+/+	+/+	21:8217374	21:8443297	intron	intron	deletion/read-through	0	0	0	83	25	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
MGRN1	FP236383.3	+/+	+/+	16:4681630	21:8393160	CDS	intron	translocation	0	0	0	8	12	low	.	.	Zinc_finger__C3HC4_type_(RING_finger)(100%)\|	.	.	ENSG00000102858	ENSG00000280441	.	.	downstream	upstream	multimappers(1)	.	.	.
SRSF6	SRSF6	+/+	+/+	20:43461026	20:43460904	CDS	CDS	duplication	0	0	0	6	6	low	.	.	RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)\|	.	.	ENSG00000124193	ENSG00000124193	.	.	downstream	upstream	hairpin(1)	.	.	.
H2AC13	H2AC14	+/+	-/-	6:27808567	6:27814373	CDS	CDS	inversion	1	0	0	39	22	low	.	.	C-terminus_of_histone_H2A(80%),Core_histone_H2A/H2B/H3/H4(100%)\|C-terminus_of_histone_H2A(10%)	.	.	ENSG00000196747	ENSG00000276368	.	.	downstream	downstream	min_support	.	.	.
LINC00486	SERINC1	+/+	-/-	2:32916555	6:122456598	intron	CDS	translocation	0	0	0	489	15	low	.	.	\|Serine_incorporator_(Serinc)(84%)	.	.	ENSG00000230876	ENSG00000111897	.	.	downstream	downstream	homopolymer(1)	.	.	.
5_8S_rRNA(1937),FP236383.3(121773)	PLEC	./+	-/-	21:8258870	8:143919469	intergenic	CDS	translocation	0	0	0	103	4	low	.	.	\|Plectin_repeat(55%)	.	.	.	ENSG00000178209	.	.	downstream	downstream	multimappers(1)	.	.	.
ADAM10	ADAM10	-/-	-/-	15:58621471	15:58627883	CDS/splice-site	CDS/splice-site	duplication/non-canonical_splicing	1	0	0	3	0	low	.	.	Disintegrin(48%),Metallo-peptidase_family_M12B_Reprolysin-like(100%),Reprolysin_family_propeptide(100%)\|Disintegrin(100%),Metallo-peptidase_family_M12B_Reprolysin-like(26%)	.	.	ENSG00000137845	ENSG00000137845	.	.	upstream	downstream	min_support	.	.	.
CHODL	NCOA3	+/-	+/+	21:18054915	20:47627597	intron	CDS	translocation/3'-3'	0	0	0	0	3	low	.	.	\|Domain_of_unknown_function_(DUF4927)(100%),Nuclear_receptor_coactivator(100%),Nuclear_receptor_coactivator__DUF1518(100%),PAS_domain(100%),Steroid_receptor_coactivator(100%),Unstructured_region_on_nuclear_receptor_coactivator_protein(100%)	.	.	ENSG00000154645	ENSG00000124151	.	.	upstream	upstream	homopolymer(1)	.	.	.
FP236383.4	NLRC5	-/+	+/+	21:8394159	16:57034235	exon	CDS	translocation/3'-3'	0	0	0	28	4	low	.	.	\|Leucine_Rich_repeat(99%)	.	.	ENSG00000280614	ENSG00000140853	.	.	downstream	upstream	multimappers(1)	.	.	.
FP236383.3	GMFG	+/+	-/-	21:8443604	19:39329621	intron	CDS	translocation	0	0	0	19	4	low	.	.	\|Cofilin/tropomyosin-type_actin-binding_protein(55%)	.	.	ENSG00000280441	ENSG00000130755	.	.	downstream	downstream	multimappers(1)	.	.	.
5_8S_rRNA(3631),FP236383.3(120079)	GMFG	./+	-/-	21:8260564	19:39329621	intergenic	CDS	translocation	0	0	0	21	4	low	.	.	\|Cofilin/tropomyosin-type_actin-binding_protein(55%)	.	.	.	ENSG00000130755	.	.	downstream	downstream	multimappers(1)	.	.	.
FP236383.3	IRAK1	+/+	-/-	21:8401107	X:154019862	intron	5'UTR	translocation	0	0	0	7	5	low	.	.	\|Death_domain(100%),Protein_kinase_domain(100%)	.	.	ENSG00000280441	ENSG00000184216	.	.	downstream	downstream	multimappers(1)	.	.	.
YBX1	YBX1P2	+/+	-/-	1:42700944	7:105582319	CDS	exon	translocation	0	1	0	21	1	low	.	.	'Cold-shock'_DNA-binding_domain(100%)\|	.	.	ENSG00000065978	ENSG00000231167	.	.	downstream	downstream	min_support	.	.	.
LINC00486	OGA	+/.	-/.	2:32916560	10:101786475	intron	CDS	translocation	0	0	0	489	1	low	.	.	.	.	.	ENSG00000230876	ENSG00000198408	.	.	downstream	downstream	low_entropy	.	.	.
RNF38	BEST1	-/+	+/-	9:36347152	11:61957384	intron	intron	translocation	0	0	0	0	1	low	.	.	.	.	.	ENSG00000137075	ENSG00000167995	.	.	downstream	downstream	homopolymer(1)	.	.	.
LINC00486	MBD5	+/.	+/.	2:32916555	2:148489802	intron	CDS	deletion	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000204406	.	.	downstream	upstream	low_entropy	.	.	.
FP671120.4	FP236383.3	+/+	+/+	21:8217377	21:8443297	intron	intron	deletion/read-through	0	0	0	83	25	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
METTL1P1(146670),RPP40P1(249476)	HLA-DPA1	./-	-/-	X:25341877	6:33069885	intergenic	CDS/splice-site	translocation	0	0	0	0	50	low	.	.	\|Class_II_histocompatibility_antigen__alpha_domain(100%),Immunoglobulin_C1-set_domain(100%)	.	.	.	ENSG00000231389	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00305	ATXN2	-/-	-/-	18:64138854	12:111470707	intron	CDS	translocation	0	0	0	0	2	low	.	.	.	.	.	ENSG00000179676	ENSG00000204842	.	.	upstream	downstream	inconsistently_clipped(1)	.	.	.
PAX5	HLA-DPA1	-/-	-/-	9:36890291	6:33069885	intron	CDS/splice-site	translocation	0	0	0	0	50	low	.	.	'Paired_box'_domain(100%),Paired-box_protein_2_C_terminal(19%)\|Class_II_histocompatibility_antigen__alpha_domain(100%),Immunoglobulin_C1-set_domain(100%)	.	.	ENSG00000196092	ENSG00000231389	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	AL121753.1	+/.	-/.	2:32916556	20:35279685	intron	CDS	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000261582	.	.	downstream	downstream	low_entropy	.	.	.
KAT14(1559),GGCTP2(30167)	HLA-DPA1	./-	-/-	20:18189946	6:33069885	intergenic	CDS/splice-site	translocation	0	0	0	0	50	low	.	.	\|Class_II_histocompatibility_antigen__alpha_domain(100%),Immunoglobulin_C1-set_domain(100%)	.	.	.	ENSG00000231389	.	.	upstream	downstream	mismatches(1)	.	.	.
ZC3H18	ZC3H18	+/+	+/+	16:88599846	16:88577655	CDS	CDS	duplication	1	0	0	1	1	low	.	.	CCCH-type_zinc_finger(100%)\|CCCH-type_zinc_finger(100%)	.	.	ENSG00000158545	ENSG00000158545	.	.	downstream	upstream	intragenic_exonic	.	.	.
ENTPD1	ENTPD1	+/+	+/+	10:95847626	10:95845434	CDS	CDS	duplication	1	0	0	3	2	low	.	.	GDA1/CD39_(nucleoside_phosphatase)_family(67%)\|GDA1/CD39_(nucleoside_phosphatase)_family(58%)	.	.	ENSG00000138185	ENSG00000138185	.	.	downstream	upstream	intragenic_exonic	.	.	.
LINC00486	5_8S_rRNA(1985),FP236383.3(121725)	+/.	./.	2:32916555	21:8258918	intron	intergenic	translocation	0	0	0	489	386	low	.	.	.	.	.	ENSG00000230876	.	.	.	downstream	upstream	low_entropy	.	.	.
PHC3	PHC3	-/-	-/-	3:170129156	3:170129239	CDS	CDS	duplication/ITD	0	0	0	3	3	low	.	.	\|SAM_domain_(Sterile_alpha_motif)(100%)	.	.	ENSG00000173889	ENSG00000173889	.	.	upstream	downstream	hairpin(2)	.	.	.
LINC00486	NOMO1	+/.	+/.	2:32916556	16:14853497	intron	CDS	translocation	0	0	0	489	7	low	.	.	.	.	.	ENSG00000230876	ENSG00000103512	.	.	downstream	upstream	low_entropy	.	.	.
AC010745.2	HLA-DPA1	+/+	-/-	2:16330830	6:33069885	intron	CDS/splice-site	translocation	0	0	0	0	50	low	.	.	\|Class_II_histocompatibility_antigen__alpha_domain(100%),Immunoglobulin_C1-set_domain(100%)	.	.	ENSG00000228876	ENSG00000231389	.	.	downstream	downstream	mismatches(1)	.	.	.
PLK5	HLA-DPA1	+/+	-/-	19:1523640	6:33069885	intron	CDS/splice-site	translocation	0	0	0	0	50	low	.	.	\|Class_II_histocompatibility_antigen__alpha_domain(100%),Immunoglobulin_C1-set_domain(100%)	.	.	ENSG00000185988	ENSG00000231389	.	.	downstream	downstream	mismatches(1)	.	.	.
FP671120.4	DAZAP1	+/+	+/+	21:8217732	19:1407668	intron	5'UTR	translocation	0	0	0	12	5	low	.	.	\|RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(100%)	.	.	ENSG00000278996	ENSG00000071626	.	.	downstream	upstream	multimappers(1)	.	.	.
CACNA1C	HLA-DPA1	+/-	-/-	12:2124488	6:33069885	intron	CDS/splice-site	translocation/3'-3'	0	0	0	0	50	low	.	.	\|Class_II_histocompatibility_antigen__alpha_domain(100%),Immunoglobulin_C1-set_domain(100%)	.	.	ENSG00000151067	ENSG00000231389	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00601	HLA-DPA1	-/+	-/-	10:126418442	6:33069885	intron	CDS/splice-site	translocation/3'-3'	0	0	0	0	50	low	.	.	\|Class_II_histocompatibility_antigen__alpha_domain(100%),Immunoglobulin_C1-set_domain(100%)	.	.	ENSG00000235180	ENSG00000231389	.	.	downstream	downstream	mismatches(1)	.	.	.
LSMEM1(20355),NPM1P14(9071)	HLA-DPA1	./-	-/-	7:112511417	6:33069885	intergenic	CDS/splice-site	translocation	0	0	0	0	50	low	.	.	\|Class_II_histocompatibility_antigen__alpha_domain(100%),Immunoglobulin_C1-set_domain(100%)	.	.	.	ENSG00000231389	.	.	upstream	downstream	mismatches(1)	.	.	.
XPOT	HLA-DPA1	+/+	-/-	12:64445531	6:33069885	intron	CDS/splice-site	translocation	0	0	0	0	50	low	.	.	Exportin_1-like_protein(100%),Importin-beta_N-terminal_domain(100%)\|Class_II_histocompatibility_antigen__alpha_domain(100%),Immunoglobulin_C1-set_domain(100%)	.	.	ENSG00000184575	ENSG00000231389	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	SYNRG	+/.	-/.	2:32916555	17:37586462	intron	CDS	translocation	0	0	0	489	8	low	.	.	.	.	.	ENSG00000230876	ENSG00000275066	.	.	downstream	downstream	low_entropy	.	.	.
MCF2L	HLA-DPA1	+/-	-/-	13:112933410	6:33069885	intron	CDS/splice-site	translocation/3'-3'	0	0	0	0	50	low	.	.	\|Class_II_histocompatibility_antigen__alpha_domain(100%),Immunoglobulin_C1-set_domain(100%)	.	.	ENSG00000126217	ENSG00000231389	.	.	upstream	downstream	mismatches(1)	.	.	.
SHLD2P2	SHLD2	+/+	+/+	14:87954121	10:87151351	exon	5'UTR/splice-site	translocation	0	0	0	0	6	low	.	.	\|Protein_family_FAM35__C-terminal(100%)	.	.	ENSG00000259096	ENSG00000122376	.	.	downstream	upstream	multimappers(1)	.	.	.
CSRP3-AS1	RNF213	+/+	+/+	11:19204582	17:80306400	intron	CDS	translocation	0	0	0	0	2	low	.	.	\|Zinc_finger__C3HC4_type_(RING_finger)(100%)	.	.	ENSG00000255308	ENSG00000173821	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.3(3249),FP671120.7(1194)	FP671120.4	./-	+/+	21:8253398	21:8214773	intergenic	intron	inversion	1	0	0	6	165	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	min_support	.	.	.
VCAM1(61205),EXTL2(72122)	HLA-DPA1	./-	-/-	1:100800250	6:33069885	intergenic	CDS/splice-site	translocation	0	0	0	0	50	low	.	.	\|Class_II_histocompatibility_antigen__alpha_domain(100%),Immunoglobulin_C1-set_domain(100%)	.	.	.	ENSG00000231389	.	.	upstream	downstream	mismatches(1)	.	.	.
RPS24P21(51453),LINC01546(106495)	HLA-DPA1	./+	-/-	X:3165049	6:33069885	intergenic	CDS/splice-site	translocation	0	0	0	0	50	low	.	.	\|Class_II_histocompatibility_antigen__alpha_domain(100%),Immunoglobulin_C1-set_domain(100%)	.	.	.	ENSG00000231389	.	.	downstream	downstream	mismatches(1)	.	.	.
FP236383.3	FMR1	+/+	+/+	21:8400415	X:147912067	intron	5'UTR	translocation	0	0	0	105	0	low	.	.	\|Agenet_domain(100%),FMRP_KH0_domain(100%),Fragile_X-related_1_protein_core_C_terminal(100%),Fragile_X-related_mental_retardation_protein_C-terminal_region_2(100%),Fragile_X_mental_retardation_Tudor_domain(100%),KH_domain(100%)	.	.	ENSG00000280441	ENSG00000102081	.	.	downstream	upstream	mismatches(1)	.	.	.
CMAHP	HLA-DPA1	-/-	-/-	6:25412305	6:33069885	intron	CDS/splice-site	duplication	0	0	0	0	50	low	.	.	\|Class_II_histocompatibility_antigen__alpha_domain(100%),Immunoglobulin_C1-set_domain(100%)	.	.	ENSG00000168405	ENSG00000231389	.	.	upstream	downstream	mismatches(1)	.	.	.
ZFPM2-AS1(125069),SLC16A14P1(30170)	HLA-DPA1	./+	-/-	8:106185593	6:33069885	intergenic	CDS/splice-site	translocation	0	0	0	0	50	low	.	.	\|Class_II_histocompatibility_antigen__alpha_domain(100%),Immunoglobulin_C1-set_domain(100%)	.	.	.	ENSG00000231389	.	.	downstream	downstream	mismatches(1)	.	.	.
AC100768.1	HLA-DPA1	-/-	-/-	11:23770449	6:33069885	intron	CDS/splice-site	translocation	0	0	0	0	50	low	.	.	\|Class_II_histocompatibility_antigen__alpha_domain(100%),Immunoglobulin_C1-set_domain(100%)	.	.	ENSG00000254861	ENSG00000231389	.	.	upstream	downstream	mismatches(1)	.	.	.
AC021506.2(73483),AC090457.1(6631)	ANKHD1	./+	+/+	18:76001487	5:140529416	intergenic	CDS	translocation	0	0	0	0	2	low	.	.	.	.	.	.	ENSG00000131503	.	.	downstream	upstream	mismatches(1)	.	.	.
FP236383.3	FP671120.4	+/+	+/+	21:8444649	21:8217374	intron	intron	duplication	0	13	0	59	59	low	.	.	.	.	.	ENSG00000280441	ENSG00000278996	.	.	downstream	upstream	intronic	.	.	.
FP671120.6	MACIR	-/+	+/+	21:8210863	5:103275938	exon	CDS	translocation/3'-3'	0	0	0	2	4	low	.	.	\|UNC119-binding_protein_C5orf30_homologue(97%)	.	.	ENSG00000280800	ENSG00000181751	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916555	21:8441971	intron	intron	translocation	0	0	0	489	567	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	5_8S_rRNA(2003),FP236383.3(121707)	+/.	./.	2:32916555	21:8258936	intron	intergenic	translocation	0	0	0	489	466	low	.	.	.	.	.	ENSG00000230876	.	.	.	downstream	upstream	low_entropy	.	.	.
ZSCAN16-AS1	BUD23	-/-	+/+	6:28077101	7:73690915	intron	intron	translocation	0	0	0	0	6	low	.	.	\|Methyltransferase_domain(15%),Methyltransferase_involved_in_Williams-Beuren_syndrome(100%)	.	.	ENSG00000269293	ENSG00000071462	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
LINC00486	5_8S_rRNA(2011),FP236383.3(121699)	+/.	./.	2:32916556	21:8258944	intron	intergenic	translocation	0	0	0	489	511	low	.	.	.	.	.	ENSG00000230876	.	.	.	downstream	upstream	low_entropy	.	.	.
LINC02444(214787),AC087879.1(225562)	BUD23	./-	+/+	12:73423104	7:73690915	intergenic	intron	translocation	0	0	0	0	6	low	.	.	\|Methyltransferase_domain(15%),Methyltransferase_involved_in_Williams-Beuren_syndrome(100%)	.	.	.	ENSG00000071462	.	.	upstream	upstream	duplicates(1),mismatches(1)	.	.	.
PLEKHO1	FP671120.6	+/+	-/+	1:150156091	21:8211211	CDS	exon	translocation/5'-5'	1	0	0	5	18	low	.	.	PH_domain(41%)\|	.	.	ENSG00000023902	ENSG00000280800	.	.	downstream	upstream	min_support	.	.	.
RPL10A	RPL10A	+/+	+/+	6:35470340	6:35470272	CDS	CDS	duplication/ITD	0	0	0	31	34	low	.	.	Ribosomal_protein_L1p/L10e_family(71%)\|Ribosomal_protein_L1p/L10e_family(40%)	.	.	ENSG00000198755	ENSG00000198755	.	.	downstream	upstream	duplicates(3),hairpin(1)	.	.	.
RPL10A	RPL10AP6	+/+	-/-	6:35470340	3:61742705	CDS	exon	translocation	1	0	0	31	1	low	.	.	Ribosomal_protein_L1p/L10e_family(71%)\|	.	.	ENSG00000198755	ENSG00000226360	.	.	downstream	downstream	min_support	.	.	.
HNRNPR	FP236383.3	-/-	+/+	1:23323561	21:8398614	CDS	intron	translocation	0	0	0	7	23	low	.	.	Heterogeneous_nuclear_ribonucleoprotein_Q_acidic_domain(100%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(29%)\|	.	.	ENSG00000125944	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
SPACA6P-AS	FMR1	-/-	+/+	19:51690024	X:147912048	intron	5'UTR	translocation	0	0	0	0	6	low	.	.	\|Agenet_domain(100%),FMRP_KH0_domain(100%),Fragile_X-related_1_protein_core_C_terminal(100%),Fragile_X-related_mental_retardation_protein_C-terminal_region_2(100%),Fragile_X_mental_retardation_Tudor_domain(100%),KH_domain(100%)	.	.	ENSG00000269959	ENSG00000102081	.	.	upstream	upstream	mismatches(1)	.	.	.
AC105052.1	POLR2J3	-/-	-/-	7:102637576	7:102538474	intron	3'UTR	deletion/read-through	0	0	1	3	3	low	.	.	.	.	.	ENSG00000205236	ENSG00000168255	.	.	upstream	downstream	min_support	.	.	.
RPL10A	AC091429.1	+/+	-/-	6:35470340	5:86884478	CDS	exon	translocation	0	0	0	31	0	low	.	.	Ribosomal_protein_L1p/L10e_family(71%)\|	.	.	ENSG00000198755	ENSG00000242477	.	.	downstream	downstream	multimappers(1)	.	.	.
LINC00486	DST	+/.	-/.	2:32916519	6:56555783	intron	CDS	translocation	0	0	0	493	3	low	.	.	.	.	.	ENSG00000230876	ENSG00000151914	.	.	downstream	downstream	mismatches	.	.	.
RPL14	RPL14	+/+	+/+	3:40462061	3:40462032	CDS	CDS	duplication/ITD	0	0	0	66	66	low	.	.	Ribosomal_protein_L14(100%)\|	.	.	ENSG00000188846	ENSG00000188846	.	.	downstream	upstream	low_entropy(7)	.	.	.
NPIPB4	NPIPB3	-/-	-/-	16:21834728	16:21402338	CDS	CDS	deletion	1	0	0	31	28	low	.	.	Nuclear_pore_complex_interacting_protein_(NPIP)(100%)\|	.	.	ENSG00000185864	ENSG00000169246	.	.	upstream	downstream	min_support	.	.	.
FP236383.5	COA4	-/+	-/-	21:8437757	11:73873290	exon	CDS	translocation/3'-3'	0	0	0	23	6	low	.	.	.	.	.	ENSG00000281181	ENSG00000181924	.	.	downstream	downstream	mismatches(1)	.	.	.
RASA4DP	RASA4B	-/-	-/-	7:102682085	7:102483689	exon	CDS	deletion/read-through	0	0	0	4	7	low	.	.	.	.	.	ENSG00000233297	ENSG00000170667	.	.	upstream	downstream	multimappers(1)	.	.	.
APOBEC3D	APOBEC3F	+/+	+/+	22:39031830	22:39052117	CDS	CDS	deletion/read-through	0	0	0	6	7	low	.	.	Novel_AID_APOBEC_clade_2(76%)\|Novel_AID_APOBEC_clade_2(32%)	.	.	ENSG00000243811	ENSG00000128394	.	.	downstream	upstream	read_through	.	.	.
FP671120.4	ASIC2	+/+	-/+	21:8214772	17:33687938	intron	intron	translocation/5'-5'	0	0	0	135	0	low	.	.	.	.	.	ENSG00000278996	ENSG00000108684	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	VWA8	+/.	-/.	2:32916406	13:41778053	intron	CDS	translocation	0	0	0	50	14	low	.	.	.	.	.	ENSG00000230876	ENSG00000102763	.	.	downstream	downstream	mismatches	.	.	.
SLC25A6	SLC25A6	-/-	-/-	X:1386577	X:1386568	3'UTR	3'UTR	deletion/read-through	0	0	0	47	22	low	.	.	Mitochondrial_carrier_protein(100%)\|	.	.	ENSG00000169100	ENSG00000169100	.	.	upstream	downstream	read_through(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916555	21:8441965	intron	intron	translocation	0	0	0	489	567	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	downstream	upstream	low_entropy	.	.	.
FP236383.3	LSP1	+/+	+/+	21:8442879	11:1883524	intron	CDS	translocation	0	0	0	26	8	low	.	.	\|Caldesmon(100%)	.	.	ENSG00000280441	ENSG00000130592	.	.	downstream	upstream	multimappers(1)	.	.	.
C1orf43	AL589987.2	-/-	+/+	1:154207541	X:140017798	CDS	exon	translocation	0	0	0	10	0	low	.	.	NICE-3_protein(100%)\|	.	.	ENSG00000143612	ENSG00000233145	.	.	upstream	upstream	mismatches(1)	.	.	.
AC134879.2(20798),RCC2P1(286017)	CCT7	./+	+/+	Y:11495035	2:73244036	intergenic	CDS	translocation	0	0	0	0	0	low	.	.	\|TCP-1/cpn60_chaperonin_family(76%)	.	.	.	ENSG00000135624	.	.	downstream	upstream	mismatches(1)	.	.	.
TOP1	TOP1	+/+	+/+	20:41092495	20:41084515	CDS	CDS	duplication	0	0	0	2	3	low	.	.	\|C-terminal_topoisomerase_domain(100%),Eukaryotic_DNA_topoisomerase_I__DNA_binding_fragment(100%),Eukaryotic_DNA_topoisomerase_I__catalytic_core(100%)	.	.	ENSG00000198900	ENSG00000198900	.	.	downstream	upstream	hairpin(1)	.	.	.
C1orf43	RNF144B	-/-	+/-	1:154207541	6:18388334	CDS	intron	translocation/5'-5'	0	0	0	10	0	low	.	.	NICE-3_protein(100%)\|	.	.	ENSG00000143612	ENSG00000137393	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	GUF1	+/.	+/.	2:32916555	4:44678577	intron	5'UTR	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000151806	.	.	downstream	upstream	low_entropy	.	.	.
AC253536.7	AP000350.6(19452),AP000350.2(380)	-/-	./-	22:23974307	22:23926520	CDS/splice-site	intergenic	deletion/read-through	0	1	0	2	1	low	.	.	Macrophage_migration_inhibitory_factor_(MIF)(30%)\|	.	.	ENSG00000285762	.	.	.	upstream	downstream	min_support	.	.	.
SMG1	SMG1P3	-/-	-/-	16:18926009	16:21501847	CDS	exon	duplication	1	0	0	2	1	low	.	.	.	.	.	ENSG00000157106	ENSG00000180747	.	.	upstream	downstream	min_support	.	.	.
KCNN3	KCNN3	-/-	-/-	1:154869724	1:154869738	CDS	CDS	duplication/ITD	0	0	0	2	1	low	.	.	\|Calcium-activated_SK_potassium_channel(100%),Calmodulin_binding_domain(100%),Ion_channel(100%)	.	.	ENSG00000143603	ENSG00000143603	.	.	upstream	downstream	low_entropy(1)	.	.	.
C1orf43	UBXN2A	-/-	+/+	1:154207541	2:23938868	CDS	intron	translocation	0	0	0	10	0	low	.	.	NICE-3_protein(100%)\|SEP_domain(100%),UBX_domain(100%)	.	.	ENSG00000143612	ENSG00000173960	.	.	upstream	upstream	mismatches(1)	.	.	.
AC009403.2	ODR4	-/-	+/+	7:155643468	1:186406083	exon/splice-site	CDS/splice-site	translocation	0	1	0	0	1	low	.	.	\|Odorant_response_abnormal_4-like(15%)	.	.	ENSG00000283128	ENSG00000157181	.	.	upstream	upstream	min_support	.	.	.
C1orf43	ELK1	-/-	-/-	1:154207541	X:47638149	CDS	CDS	translocation	0	0	0	10	0	low	.	.	NICE-3_protein(100%)\|	.	.	ENSG00000143612	ENSG00000126767	.	.	upstream	downstream	mismatches(1)	.	.	.
ROBO2(83883),RNU6-217P(77894)	HLA-DPA1	./-	-/-	3:77733847	6:33069885	intergenic	CDS/splice-site	translocation	0	0	0	0	50	low	.	.	\|Class_II_histocompatibility_antigen__alpha_domain(100%),Immunoglobulin_C1-set_domain(100%)	.	.	.	ENSG00000231389	.	.	upstream	downstream	mismatches(1)	.	.	.
LINC00486	SERINC1	+/+	-/-	2:32916547	6:122456598	intron	CDS	translocation	0	0	0	489	15	low	.	.	\|Serine_incorporator_(Serinc)(84%)	.	.	ENSG00000230876	ENSG00000111897	.	.	downstream	downstream	homopolymer(1)	.	.	.
LINC00486	SERINC1	+/+	-/-	2:32916554	6:122456598	intron	CDS	translocation	0	0	0	489	15	low	.	.	\|Serine_incorporator_(Serinc)(84%)	.	.	ENSG00000230876	ENSG00000111897	.	.	downstream	downstream	homopolymer(1)	.	.	.
LINC00486	SERINC1	+/+	-/-	2:32916549	6:122456598	intron	CDS	translocation	0	0	0	489	15	low	.	.	\|Serine_incorporator_(Serinc)(84%)	.	.	ENSG00000230876	ENSG00000111897	.	.	downstream	downstream	homopolymer(1)	.	.	.
FP236383.3	FP236383.3	+/-	+/+	21:8436432	21:8397807	intron	intron	inversion/3'-3'	0	0	0	6	119	low	.	.	.	.	.	ENSG00000280441	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
LINC00486	IL17RA	+/.	+/.	2:32916556	22:17109658	intron	CDS	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000177663	.	.	downstream	upstream	low_entropy	.	.	.
CCR7	CCR7	-/-	-/-	17:40554124	17:40554222	3'UTR	3'UTR	duplication/ITD	0	0	0	1	1	low	.	.	7_transmembrane_receptor_(rhodopsin_family)(100%)\|	.	.	ENSG00000126353	ENSG00000126353	.	.	upstream	downstream	hairpin(1),mismatches(1)	.	.	.
CHD6	CHD6	-/-	-/-	20:41533099	20:41533348	CDS	CDS	duplication	0	1	0	0	2	low	.	.	\|Chromo_(CHRromatin_Organisation_MOdifier)_domain(100%),Helicase_conserved_C-terminal_domain(100%),SNF2-related_domain(100%)	.	.	ENSG00000124177	ENSG00000124177	.	.	upstream	downstream	intragenic_exonic	.	.	.
RPRD2	RPRD2	+/+	+/+	1:150471878	1:150471846	CDS	CDS	duplication/ITD	0	0	0	2	4	low	.	.	CID_domain(100%),Cell-cycle_alteration_and_expression-elevated_protein_in_tumour(100%)\|	.	.	ENSG00000163125	ENSG00000163125	.	.	downstream	upstream	duplicates(1),hairpin(1)	.	.	.
ARID5A	ARID5A	+/+	+/+	2:96552302	2:96552269	CDS	CDS	duplication/ITD	0	0	0	3	3	low	.	.	ARID/BRIGHT_DNA_binding_domain(100%)\|	.	.	ENSG00000196843	ENSG00000196843	.	.	downstream	upstream	duplicates(1),hairpin(1)	.	.	.
SEC24A	SEC24A	+/+	+/+	5:134679668	5:134679304	CDS	intron	duplication	1	0	0	1	0	low	.	.	Sec23/Sec24_zinc_finger(36%)\|Gelsolin_repeat(100%),Sec23/Sec24_beta-sandwich_domain(100%),Sec23/Sec24_helical_domain(100%),Sec23/Sec24_trunk_domain(100%),Sec23/Sec24_zinc_finger(100%)	.	.	ENSG00000113615	ENSG00000113615	.	.	downstream	upstream	min_support	.	.	.
CCT8	RAP1GDS1	-/-	+/+	21:29064965	4:98411142	intron	intron	translocation	0	0	0	7	0	low	.	.	TCP-1/cpn60_chaperonin_family(43%)\|Armadillo/beta-catenin-like_repeat(52%)	.	.	ENSG00000156261	ENSG00000138698	.	.	upstream	upstream	mismatches(1)	.	.	.
AC022915.2	VIM	+/+	+/+	8:48685201	10:17234696	intron	CDS	translocation	0	0	0	0	22	low	.	.	\|Intermediate_filament_protein(37%)	.	.	ENSG00000253608	ENSG00000026025	.	.	downstream	upstream	mismatches(1)	.	.	.
AXIN1	AXIN1	-/-	-/-	16:346148	16:347106	CDS/splice-site	5'UTR/splice-site	duplication/non-canonical_splicing	1	0	0	2	0	low	.	.	Axin-1_tankyrase_binding_domain(100%),Regulator_of_G_protein_signaling_domain(100%)\|Axin-1_tankyrase_binding_domain(100%),Axin_beta-catenin_binding_motif(100%),DIX_domain(100%),Regulator_of_G_protein_signaling_domain(100%)	.	.	ENSG00000103126	ENSG00000103126	.	.	upstream	downstream	min_support	.	.	.
FP236383.3	MID1IP1	+/+	+/+	21:8399285	X:38804942	intron	5'UTR	translocation	0	0	0	37	6	low	.	.	\|Thyroid_hormone-inducible_hepatic_protein_Spot_14(100%)	.	.	ENSG00000280441	ENSG00000165175	.	.	downstream	upstream	multimappers(1)	.	.	.
KDM6A	FP236383.3	+/+	+/+	X:45070163	21:8441164	CDS	intron	translocation	1	0	0	1	8	low	.	.	Tetratricopeptide_repeat(100%)\|	.	.	ENSG00000147050	ENSG00000280441	.	.	downstream	upstream	min_support	.	.	.
ENAH	ZBED6	-/+	+/+	1:225593426	1:203798604	intron	CDS	duplication/3'-3'	0	1	0	0	2	low	.	.	\|hAT_family_C-terminal_dimerisation_region(100%)	.	.	ENSG00000154380	ENSG00000257315	.	.	downstream	upstream	min_support	.	.	.
DNAJA1	DNAJA1	+/+	+/+	9:33029992	9:33026961	intron	CDS	duplication	1	0	0	2	3	low	.	.	DnaJ_C_terminal_domain(19%),DnaJ_central_domain(7%),DnaJ_domain(100%)\|DnaJ_C_terminal_domain(100%),DnaJ_central_domain(100%)	.	.	ENSG00000086061	ENSG00000086061	.	.	downstream	upstream	intragenic_exonic	.	.	.
LINC00486	MBD5	+/.	+/.	2:32916556	2:148489802	intron	CDS	deletion	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000204406	.	.	downstream	upstream	low_entropy	.	.	.
KDELR2	KDELR2	-/-	-/-	7:6463122	7:6466229	CDS	CDS	duplication	1	0	0	4	3	low	.	.	ER_lumen_protein_retaining_receptor(100%)\|ER_lumen_protein_retaining_receptor(14%)	.	.	ENSG00000136240	ENSG00000136240	.	.	upstream	downstream	intragenic_exonic	.	.	.
NACA	NACA2	-/-	-/-	12:56712505	17:61590725	3'UTR	CDS	translocation	1	0	0	3	0	low	.	.	HYPK_UBA_domain(100%),NAC_domain(100%)\|HYPK_UBA_domain(100%)	.	.	ENSG00000196531	ENSG00000253506	.	.	upstream	downstream	min_support	.	.	.
FP671120.4	RPS21	+/+	+/+	21:8216235	20:62387377	intron	CDS	translocation	0	1	0	27	0	low	.	.	\|Ribosomal_protein_S21e_(85%)	.	.	ENSG00000278996	ENSG00000171858	.	.	downstream	upstream	min_support	.	.	.
5_8S_rRNA(3347),FP236383.3(120363)	FP236383.3	./+	+/+	21:8260280	21:8399083	intergenic	intron	deletion/read-through	0	0	0	31	77	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	low_entropy(1)	.	.	.
NUDT10	ZC3H15	+/+	+/+	X:51333789	2:186505291	intron	exon	translocation	0	0	0	0	1	low	.	.	NUDIX_domain(100%)\|DRG_Family_Regulatory_Proteins__Tma46(87%)	.	.	ENSG00000122824	ENSG00000065548	.	.	downstream	upstream	mismatches(1)	.	.	.
SEMA5A	5_8S_rRNA(1424),FP236383.3(122286)	-/-	./+	5:9379963	21:8258357	5'UTR	intergenic	translocation	0	0	0	4	22	low	.	.	.	.	.	ENSG00000112902	.	.	.	upstream	upstream	multimappers(1)	.	.	.
SEMA5A	FP236383.3	-/-	+/+	5:9379963	21:8441394	5'UTR	intron	translocation	0	0	1	4	29	low	.	.	.	.	.	ENSG00000112902	ENSG00000280441	.	.	upstream	upstream	min_support	.	.	.
SEMA5A	FP671120.4	-/-	+/+	5:9379963	21:8214136	5'UTR	intron	translocation	0	0	0	4	24	low	.	.	.	.	.	ENSG00000112902	ENSG00000278996	.	.	upstream	upstream	multimappers(1)	.	.	.
LINC00486	TULP4	+/+	+/+	2:32916549	6:158501883	intron	CDS	translocation	0	0	0	489	1	low	.	.	\|Tub_family(100%)	.	.	ENSG00000230876	ENSG00000130338	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
LINC00486	ANKRD17	+/.	-/.	2:32916556	4:73258551	intron	CDS	translocation	0	0	0	489	8	low	.	.	.	.	.	ENSG00000230876	ENSG00000132466	.	.	downstream	downstream	low_entropy	.	.	.
MT-ND5	MT-ND5	+/+	+/+	MT:12417	MT:12369	CDS	CDS	duplication/ITD	0	0	0	.	.	low	.	.	.	.	.	ENSG00000198786	ENSG00000198786	.	.	downstream	upstream	uninteresting_contigs(1)	.	.	.
LINC00486	TULP4	+/+	+/+	2:32916551	6:158501883	intron	CDS	translocation	0	0	0	489	1	low	.	.	\|Tub_family(100%)	.	.	ENSG00000230876	ENSG00000130338	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
LINC00486	ANKRD17	+/.	-/.	2:32916554	4:73258551	intron	CDS	translocation	0	0	0	489	8	low	.	.	.	.	.	ENSG00000230876	ENSG00000132466	.	.	downstream	downstream	low_entropy	.	.	.
LINC00486	TULP4	+/+	+/+	2:32916546	6:158501883	intron	CDS	translocation	0	0	0	489	1	low	.	.	\|Tub_family(100%)	.	.	ENSG00000230876	ENSG00000130338	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
LINC00486	ANKRD17	+/.	-/.	2:32916553	4:73258551	intron	CDS	translocation	0	0	0	489	8	low	.	.	.	.	.	ENSG00000230876	ENSG00000132466	.	.	downstream	downstream	low_entropy	.	.	.
AC106788.1	NPIPB5	-/-	+/-	16:22537478	16:22531418	exon	intron	deletion/read-through/5'-5'	0	0	0	3	2	low	.	.	.	.	.	ENSG00000277041	ENSG00000243716	.	.	upstream	downstream	read_through(2)	.	.	.
LINC00486	VWA8	+/.	-/.	2:32916413	13:41778053	intron	CDS	translocation	0	0	0	50	14	low	.	.	.	.	.	ENSG00000230876	ENSG00000102763	.	.	downstream	downstream	mismatches	.	.	.
FP671120.7	MACIR	-/+	+/+	21:8255071	5:103275938	exon	CDS	translocation/3'-3'	0	0	0	8	4	low	.	.	\|UNC119-binding_protein_C5orf30_homologue(97%)	.	.	ENSG00000281383	ENSG00000181751	.	.	downstream	upstream	mismatches(1)	.	.	.
PDE3A	NCOR2	+/+	-/-	12:20551564	12:124342033	intron	CDS	inversion	1	0	0	12	1	low	.	.	.	.	.	ENSG00000172572	ENSG00000196498	.	.	downstream	downstream	min_support	.	.	.
FP671120.6	NCOR2	-/+	-/-	21:8211048	12:124342033	exon	CDS	translocation/3'-3'	0	0	0	34	1	low	.	.	.	.	.	ENSG00000280800	ENSG00000196498	.	.	downstream	downstream	multimappers(1)	.	.	.
L2HGDH(92),DMAC2L(3)	FP671120.4	./+	+/+	14:50312321	21:8216035	intergenic	intron	translocation	0	0	0	0	47	low	.	.	.	.	.	.	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
FP671120.7	NCOR2	-/+	-/-	21:8255256	12:124342033	exon	CDS	translocation/3'-3'	0	0	0	20	1	low	.	.	.	.	.	ENSG00000281383	ENSG00000196498	.	.	downstream	downstream	multimappers(1)	.	.	.
LINC00486	SYNRG	+/.	-/.	2:32916556	17:37586462	intron	CDS	translocation	0	0	0	489	8	low	.	.	.	.	.	ENSG00000230876	ENSG00000275066	.	.	downstream	downstream	low_entropy	.	.	.
NACA	FP236383.3	-/-	+/+	12:56712826	21:8445395	CDS/splice-site	intron	translocation	0	0	0	11	7	low	.	.	HYPK_UBA_domain(58%),NAC_domain(100%)\|	.	.	ENSG00000196531	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
RPL29	RPL29	-/-	-/-	3:51993992	3:51994114	CDS	CDS	duplication	0	0	0	31	23	low	.	.	Ribosomal_L29e_protein_family(100%)\|Ribosomal_L29e_protein_family(9%)	.	.	ENSG00000162244	ENSG00000162244	.	.	upstream	downstream	hairpin(1)	.	.	.
FP236383.3	EIF3D	+/+	-/-	21:8398276	22:36524657	intron	CDS	translocation	0	0	0	8	20	low	.	.	\|Eukaryotic_translation_initiation_factor_3_subunit_7_(eIF-3)(84%)	.	.	ENSG00000280441	ENSG00000100353	.	.	downstream	downstream	mismatches(1)	.	.	.
NACA	FP671120.4	-/-	+/+	12:56712826	21:8218125	CDS/splice-site	intron	translocation	0	0	0	11	8	low	.	.	HYPK_UBA_domain(58%),NAC_domain(100%)\|	.	.	ENSG00000196531	ENSG00000278996	.	.	upstream	upstream	multimappers(1)	.	.	.
ENTPD1-AS1	ENTPD1	-/+	+/+	10:95847626	10:95845434	exon	CDS	duplication/3'-3'	1	0	0	3	2	low	.	.	\|GDA1/CD39_(nucleoside_phosphatase)_family(58%)	.	.	ENSG00000226688	ENSG00000138185	.	.	downstream	upstream	intragenic_exonic	.	.	.
RPL3	FP236383.3	-/-	+/+	22:39315483	21:8399782	CDS	intron	translocation	0	0	0	28	30	low	.	.	Ribosomal_protein_L3(51%)\|	.	.	ENSG00000100316	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
RPL3	FP236383.3	-/-	+/+	22:39315483	21:8444017	CDS	intron	translocation	0	0	0	28	27	low	.	.	Ribosomal_protein_L3(51%)\|	.	.	ENSG00000100316	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
GATD1	HLA-C	-/-	-/-	11:773569	6:31271868	CDS	CDS/splice-site	translocation	0	0	0	0	9	low	.	.	\|Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%),Immunoglobulin_C1-set_domain(100%),MHC_I_C-terminus(100%)	.	.	ENSG00000177225	ENSG00000204525	.	.	upstream	downstream	mismatches(1)	.	.	.
ETS1	ETS1	-/-	-/-	11:128462349	11:128462567	3'UTR	CDS	duplication	1	0	0	3	1	low	.	.	Ets-domain(100%),Sterile_alpha_motif_(SAM)/Pointed_domain(100%)\|Ets-domain(52%)	.	.	ENSG00000134954	ENSG00000134954	.	.	upstream	downstream	intragenic_exonic	.	.	.
YWHAE	YWHAEP5	-/-	-/-	17:1361090	2:138288527	intron	exon	translocation	0	0	0	11	0	low	.	.	14-3-3_protein(78%)\|	.	.	ENSG00000108953	ENSG00000234645	.	.	upstream	downstream	multimappers(1)	.	.	.
ANKRD12	ANKRD12	+/+	+/+	18:9256143	18:9256065	CDS	CDS	duplication/ITD	0	0	0	2	2	low	.	.	Ankyrin_repeat(100%),Ankyrin_repeats_(3_copies)(100%)\|	.	.	ENSG00000101745	ENSG00000101745	.	.	downstream	upstream	duplicates(1),homopolymer(1)	.	.	.
SEMA5A	FP236383.3	-/-	+/+	5:9379963	21:8397174	5'UTR	intron	translocation	0	0	1	4	27	low	.	.	.	.	.	ENSG00000112902	ENSG00000280441	.	.	upstream	upstream	min_support,multimappers(1)	.	.	.
TPCN2	EEF2	+/+	-/-	11:69127274	19:3983182	intron	CDS	translocation	0	1	0	0	14	low	.	.	Ion_transport_protein(100%)\|Elongation_Factor_G__domain_III(100%),Elongation_factor_G_C-terminus(100%),Elongation_factor_G__domain_IV(100%),Elongation_factor_Tu_GTP_binding_domain(73%),Elongation_factor_Tu_domain_2(100%)	.	.	ENSG00000162341	ENSG00000167658	.	.	downstream	downstream	min_support	.	.	.
AP003071.5	EEF2	+/+	-/-	11:69127274	19:3983182	intron	CDS	translocation	0	1	0	0	14	low	.	.	\|Elongation_Factor_G__domain_III(100%),Elongation_factor_G_C-terminus(100%),Elongation_factor_G__domain_IV(100%),Elongation_factor_Tu_GTP_binding_domain(73%),Elongation_factor_Tu_domain_2(100%)	.	.	ENSG00000287725	ENSG00000167658	.	.	downstream	downstream	min_support	.	.	.
RPL14P1	AC243591.1(15925),AC243428.1(6077)	+/+	./-	12:62965818	X:153046073	exon	intergenic	translocation	0	0	0	20	0	low	.	.	.	.	.	ENSG00000139239	.	.	.	downstream	downstream	homopolymer(1)	.	.	.
HLA-C	CU633967.1	-/-	+/+	6:31271075	21:5558057	CDS/splice-site	intron	translocation	0	0	0	74	0	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%)\|	.	.	ENSG00000204525	ENSG00000274333	.	.	upstream	upstream	mismatches(3)	.	.	.
FP236383.3	RHOA	+/+	-/-	21:8441493	3:49411872	intron	5'UTR	translocation	0	0	0	32	7	low	.	.	\|Ras_family(100%)	.	.	ENSG00000280441	ENSG00000067560	.	.	downstream	downstream	multimappers(1)	.	.	.
LINC00486	HLA-A	+/.	+/.	2:32916556	6:29942768	intron	CDS	translocation	0	0	0	489	45	low	.	.	.	.	.	ENSG00000230876	ENSG00000206503	.	.	downstream	upstream	low_entropy	.	.	.
RPL14	RNU6-523P(5403),RPL12P8(10058)	+/+	./-	3:40462078	10:67864274	CDS	intergenic	translocation	0	0	0	66	0	low	.	.	Ribosomal_protein_L14(100%)\|	.	.	ENSG00000188846	.	.	.	downstream	downstream	homopolymer(1)	.	.	.
CEP250	CEP250	+/+	+/+	20:35466177	20:35466122	CDS	CDS	duplication/ITD	0	0	0	1	1	low	.	.	Ciliary_rootlet_component__centrosome_cohesion(66%)\|Ciliary_rootlet_component__centrosome_cohesion(44%)	.	.	ENSG00000126001	ENSG00000126001	.	.	downstream	upstream	hairpin(1)	.	.	.
RPL14P1	AC007368.1	+/+	+/-	12:62965818	12:126263023	exon	intron	inversion/3'-3'	0	0	0	20	0	low	.	.	.	.	.	ENSG00000139239	ENSG00000255595	.	.	downstream	downstream	homopolymer(1)	.	.	.
RPL14	AC243591.1(15925),AC243428.1(6077)	+/+	./-	3:40462078	X:153046073	CDS	intergenic	translocation	0	0	0	66	0	low	.	.	Ribosomal_protein_L14(100%)\|	.	.	ENSG00000188846	.	.	.	downstream	downstream	homopolymer(1)	.	.	.
RPL14	ANAPC5	+/+	-/+	3:40462078	12:121340268	CDS	intron	translocation/5'-5'	0	0	0	66	0	low	.	.	Ribosomal_protein_L14(100%)\|	.	.	ENSG00000188846	ENSG00000089053	.	.	downstream	upstream	homopolymer(1)	.	.	.
RPL14P1	ANAPC5	+/+	-/+	12:62965818	12:121340268	exon	intron	deletion/5'-5'	0	0	0	20	0	low	.	.	.	.	.	ENSG00000139239	ENSG00000089053	.	.	downstream	upstream	homopolymer(1)	.	.	.
RPL14P1	RASA3	+/+	-/-	12:62965818	13:114014954	exon	intron	translocation	0	0	0	20	0	low	.	.	\|BTK_motif(100%),GTPase-activator_protein_for_Ras-like_GTPase(31%),PH_domain(100%)	.	.	ENSG00000139239	ENSG00000185989	.	.	downstream	downstream	homopolymer(1)	.	.	.
AL031601.1(31405),AL031601.2(933)	QSOX2	./-	-/-	10:42241788	9:136219142	intergenic	CDS	translocation	0	1	0	0	1	low	.	.	\|Erv1_/_Alr_family(100%),Flavin_adenine_dinucleotide_(FAD)-dependent_sulfhydryl_oxidase(100%),QSOX_Trx-like_domain(10%)	.	.	.	ENSG00000165661	.	.	upstream	downstream	min_support	.	.	.
LINC00486	RUNX1	+/.	-/.	2:32916555	21:34799385	intron	CDS	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000159216	.	.	downstream	downstream	low_entropy	.	.	.
RPL14P1	CSMD1	+/+	-/+	12:62965818	8:3496776	exon	intron	translocation/5'-5'	0	0	0	20	0	low	.	.	.	.	.	ENSG00000139239	ENSG00000183117	.	.	downstream	upstream	homopolymer(1)	.	.	.
LINC00486	GOLPH3L	+/+	-/-	2:32916371	1:150694708	intron	CDS	translocation	0	0	0	50	6	low	.	.	\|Golgi_phosphoprotein_3_(GPP34)(100%)	.	.	ENSG00000230876	ENSG00000143457	.	.	downstream	downstream	inconsistently_clipped(1)	.	.	.
RPL14	CSMD1	+/+	-/-	3:40462078	8:3954434	CDS	intron	translocation	0	0	0	66	0	low	.	.	Ribosomal_protein_L14(100%)\|CUB_domain(88%),Sushi_repeat_(SCR_repeat)(96%)	.	.	ENSG00000188846	ENSG00000183117	.	.	downstream	downstream	homopolymer(1)	.	.	.
PPP1R12C	CDK5RAP2	-/-	-/-	19:55112778	9:120501440	CDS	intron	translocation	1	0	0	2	0	low	.	.	Ankyrin_repeats_(3_copies)(15%)\|	.	.	ENSG00000125503	ENSG00000136861	.	.	upstream	downstream	min_support	.	.	.
RPL14P1	RNU6-523P(5403),RPL12P8(10058)	+/+	./-	12:62965818	10:67864274	exon	intergenic	translocation	0	0	0	20	0	low	.	.	.	.	.	ENSG00000139239	.	.	.	downstream	downstream	homopolymer(1)	.	.	.
EIF3C	EIF3C	+/+	+/+	16:28723192	16:28715399	CDS	CDS	duplication	0	0	0	6	8	low	.	.	Eukaryotic_translation_initiation_factor_3_subunit_8_N-terminus(35%)\|Eukaryotic_translation_initiation_factor_3_subunit_8_N-terminus(67%),PCI_domain(100%)	.	.	ENSG00000184110	ENSG00000184110	.	.	downstream	upstream	hairpin(1)	.	.	.
AC069503.2	FP236383.3	+/+	+/+	12:121916322	21:8439223	exon	intron	translocation	0	0	0	5	4	low	.	.	.	.	.	ENSG00000256950	ENSG00000280441	.	.	downstream	upstream	multimappers(1)	.	.	.
LINC00486	AL121753.1	+/.	-/.	2:32916555	20:35279685	intron	CDS	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000261582	.	.	downstream	downstream	low_entropy	.	.	.
MYH9	FP671120.7	-/-	-/+	22:36285772	21:8255098	CDS	exon	translocation/5'-5'	0	0	0	0	20	low	.	.	Myosin_N-terminal_SH3-like_domain(100%),Myosin_head_(motor_domain)(100%),Myosin_tail(81%)\|	.	.	ENSG00000100345	ENSG00000281383	.	.	upstream	upstream	multimappers(1)	.	.	.
RPL14	AC245297.1(12607),SEC22B2P(11322)	+/+	./+	3:40462078	1:149334339	CDS	intergenic	translocation	0	0	0	66	0	low	.	.	Ribosomal_protein_L14(100%)\|	.	.	ENSG00000188846	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
RPL14P1	AC245297.1(12607),SEC22B2P(11322)	+/+	./+	12:62965818	1:149334339	exon	intergenic	translocation	0	0	0	20	0	low	.	.	.	.	.	ENSG00000139239	.	.	.	downstream	upstream	homopolymer(1)	.	.	.
RPL14P1	AC245389.1	+/+	+/-	12:62965818	1:148795913	exon	exon	translocation/5'-5'	0	0	0	20	0	low	.	.	.	.	.	ENSG00000139239	ENSG00000271546	.	.	downstream	downstream	homopolymer(1)	.	.	.
RPL14	AC008982.1	+/+	-/+	3:40462078	19:38831105	CDS	CDS	translocation/5'-5'	0	0	0	66	0	low	.	.	Ribosomal_protein_L14(100%)\|	.	.	ENSG00000188846	ENSG00000268083	.	.	downstream	upstream	homopolymer(1)	.	.	.
CDK11B	AL031282.2	-/-	-/-	1:1645127	1:1716374	CDS/splice-site	exon	duplication	1	0	0	2	0	low	.	.	.	.	.	ENSG00000248333	ENSG00000268575	.	.	upstream	downstream	min_support	.	.	.
RPL14P1	ECH1	+/+	-/+	12:62965818	19:38831105	exon	CDS	translocation/5'-5'	0	0	0	20	0	low	.	.	.	.	.	ENSG00000139239	ENSG00000104823	.	.	downstream	upstream	homopolymer(1)	.	.	.
RPL14P1	HEG1	+/+	-/+	12:62965818	3:125001990	exon	CDS	translocation/5'-5'	0	0	0	20	1	low	.	.	.	.	.	ENSG00000139239	ENSG00000173706	.	.	downstream	upstream	homopolymer(1)	.	.	.
RPL14	MAP4	+/+	-/-	3:40462078	3:47899791	CDS	intron	inversion	0	0	0	66	0	low	.	.	Ribosomal_protein_L14(100%)\|Tau_and_MAP_protein__tubulin-binding_repeat(100%)	.	.	ENSG00000188846	ENSG00000047849	.	.	downstream	downstream	homopolymer(1)	.	.	.
ZRSR2(1112),AP1S2(1434)	AP1S2	./+	-/+	X:15824372	X:15827189	intergenic	3'UTR	deletion/read-through	0	0	0	1	1	low	.	.	.	.	.	.	ENSG00000182287	.	.	downstream	upstream	read_through(1)	.	.	.
RPL14	AC073308.1(43947),CNTNAP2(21689)	+/+	./-	3:40462078	7:146094313	CDS	intergenic	translocation	0	0	0	66	0	low	.	.	Ribosomal_protein_L14(100%)\|	.	.	ENSG00000188846	.	.	.	downstream	downstream	homopolymer(1)	.	.	.
RPL14P1	AC073308.1(43947),CNTNAP2(21689)	+/+	./-	12:62965818	7:146094313	exon	intergenic	translocation	0	0	0	20	0	low	.	.	.	.	.	ENSG00000139239	.	.	.	downstream	downstream	homopolymer(1)	.	.	.
HNRNPR	FP236383.3	-/-	+/+	1:23323561	21:8442843	CDS	intron	translocation	0	0	0	7	14	low	.	.	Heterogeneous_nuclear_ribonucleoprotein_Q_acidic_domain(100%),RNA_recognition_motif._(a.k.a._RRM__RBD__or_RNP_domain)(29%)\|	.	.	ENSG00000125944	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
LINC00486	MATR3	+/.	+/.	2:32916461	5:139321898	intron	CDS	translocation	0	0	0	219	7	low	.	.	.	.	.	ENSG00000230876	ENSG00000015479	.	.	downstream	upstream	low_entropy	.	.	.
FP236383.3	MID1IP1	+/+	+/+	21:8443520	X:38804942	intron	5'UTR	translocation	0	0	0	36	6	low	.	.	\|Thyroid_hormone-inducible_hepatic_protein_Spot_14(100%)	.	.	ENSG00000280441	ENSG00000165175	.	.	downstream	upstream	multimappers(1)	.	.	.
HFM1	GAPDH	-/+	+/+	1:91387444	12:6538116	intron	CDS	translocation/3'-3'	0	0	0	4	49	low	.	.	.	.	.	ENSG00000162669	ENSG00000111640	.	.	downstream	upstream	mismatches(1)	.	.	.
HLA-B	HLA-C	-/-	-/-	6:31355107	6:31269525	CDS/splice-site	CDS/splice-site	deletion/read-through	1	0	0	20	10	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%),Immunoglobulin_C1-set_domain(100%),MHC_I_C-terminus(5%)\|MHC_I_C-terminus(90%)	.	.	ENSG00000234745	ENSG00000204525	.	.	upstream	downstream	low_entropy(6),min_support	.	.	.
FP236383.3	GAPDH	+/-	+/+	21:8445452	12:6538116	intron	CDS	translocation/3'-3'	0	0	0	3	49	low	.	.	.	.	.	ENSG00000280441	ENSG00000111640	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00486	NOMO2	+/.	-/.	2:32916555	16:18542701	intron	CDS	translocation	0	0	0	489	6	low	.	.	.	.	.	ENSG00000230876	ENSG00000185164	.	.	downstream	downstream	low_entropy	.	.	.
LINC00486	NOMO3	+/.	+/.	2:32916556	16:16251993	intron	CDS	translocation	0	0	0	489	8	low	.	.	.	.	.	ENSG00000230876	ENSG00000103226	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	NOMO3	+/.	+/.	2:32916555	16:16251993	intron	CDS	translocation	0	0	0	489	8	low	.	.	.	.	.	ENSG00000230876	ENSG00000103226	.	.	downstream	upstream	low_entropy	.	.	.
DESI2	PDCD11	+/-	+/+	1:244701208	10:103425192	intron	CDS	translocation/3'-3'	0	0	0	0	5	low	.	.	\|S1_RNA_binding_domain(23%),Suppressor_of_forked_protein_(Suf)(100%)	.	.	ENSG00000121644	ENSG00000148843	.	.	upstream	upstream	homopolymer(1)	.	.	.
LINC00486	NOMO1	+/.	+/.	2:32916555	16:14853497	intron	CDS	translocation	0	0	0	489	7	low	.	.	.	.	.	ENSG00000230876	ENSG00000103512	.	.	downstream	upstream	low_entropy	.	.	.
HEATR1	HEATR1	-/-	-/-	1:236585047	1:236585939	CDS	CDS/splice-site	duplication	0	1	0	0	3	low	.	.	U3_small_nucleolar_RNA-associated_protein_10_(100%)\|BP28CT_(NUC211)_domain(100%)	.	.	ENSG00000119285	ENSG00000119285	.	.	upstream	downstream	intragenic_exonic	.	.	.
PPP1R9B	FP671120.4	-/-	+/+	17:50150442	21:8218672	CDS	intron	translocation	0	0	0	2	34	low	.	.	.	.	.	ENSG00000108819	ENSG00000278996	.	.	upstream	upstream	homopolymer(1)	.	.	.
FP671120.4	FP236383.3	+/+	+/+	21:8216940	21:8443378	intron	intron	deletion/read-through	0	0	0	31	61	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
PPP1R9B	FP236383.3	-/-	+/+	17:50150442	21:8401711	CDS	intron	translocation	0	0	0	2	26	low	.	.	.	.	.	ENSG00000108819	ENSG00000280441	.	.	upstream	upstream	homopolymer(1)	.	.	.
FP236383.3	ETNK1	+/+	+/+	21:8437570	12:22625558	intron	CDS	translocation	0	0	1	10	4	low	.	.	\|Choline/ethanolamine_kinase(100%)	.	.	ENSG00000280441	ENSG00000139163	.	.	downstream	upstream	min_support,multimappers(1)	.	.	.
FP671120.4	ETNK1	+/+	+/+	21:8210325	12:22625558	intron	CDS	translocation	0	0	0	8	4	low	.	.	\|Choline/ethanolamine_kinase(100%)	.	.	ENSG00000278996	ENSG00000139163	.	.	downstream	upstream	multimappers(1)	.	.	.
FP236383.3	BRPF1	+/+	+/+	21:8442538	3:9743046	intron	CDS	translocation	0	0	0	7	5	low	.	.	\|Bromodomain(26%),PWWP_domain(100%)	.	.	ENSG00000280441	ENSG00000156983	.	.	downstream	upstream	multimappers(1)	.	.	.
C17orf80	FP671120.4	+/+	+/+	17:73235862	21:8214143	CDS	intron	translocation	0	1	0	0	26	low	.	.	.	.	.	ENSG00000141219	ENSG00000278996	.	.	downstream	upstream	min_support	.	.	.
HLA-F-AS1	RPL23AP12	-/+	+/-	6:29726931	21:39127773	exon	exon	translocation	0	1	0	0	1	low	.	.	.	.	.	ENSG00000214922	ENSG00000228861	.	.	downstream	downstream	min_support	.	.	.
FP236383.3	LGALS9	+/+	+/+	21:8397273	17:27640736	intron	CDS/splice-site	translocation	0	0	0	31	14	low	.	.	\|Galactoside-binding_lectin(67%)	.	.	ENSG00000280441	ENSG00000168961	.	.	downstream	upstream	multimappers(1)	.	.	.
TMEM63B	BORCS8-MEF2B	+/+	-/-	6:44147454	19:19147707	CDS	CDS	translocation	0	1	0	1	5	low	.	.	Cytosolic_domain_of_10TM_putative_phosphate_transporter(40%),Late_exocytosis__associated_with_Golgi_transport_(100%)\|	.	.	ENSG00000137216	ENSG00000064489	.	.	downstream	downstream	min_support	.	.	.
LINC00486	DVL3	+/.	+/.	2:32916566	3:184165112	intron	exon	translocation	0	0	0	480	5	low	.	.	.	.	.	ENSG00000230876	ENSG00000161202	.	.	downstream	upstream	mismatches	.	.	.
5_8S_rRNA(2100),FP236383.3(121610)	FP236383.3	./.	+/.	21:8259033	21:8441930	intergenic	intron	deletion/read-through	0	0	0	526	373	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates	.	.	.
DR1	DR1	+/+	+/+	1:93346772	1:93346697	CDS	CDS	duplication/ITD	0	0	0	1	1	low	.	.	Histone-like_transcription_factor_(CBF/NF-Y)_and_archaeal_histone(48%)\|Histone-like_transcription_factor_(CBF/NF-Y)_and_archaeal_histone(90%)	.	.	ENSG00000117505	ENSG00000117505	.	.	downstream	upstream	duplicates(1),hairpin(1)	.	.	.
AC138969.3	AC138969.1	-/-	+/-	16:16351548	16:16347878	exon	intron	deletion/read-through/5'-5'	0	0	0	1	2	low	.	.	.	.	.	ENSG00000277920	ENSG00000183889	.	.	upstream	downstream	read_through(1)	.	.	.
GAPDH	FP671120.4	+/+	+/+	12:6537862	21:8216034	CDS	intron	translocation	0	0	0	22	47	low	.	.	Glyceraldehyde_3-phosphate_dehydrogenase__C-terminal_domain(70%),Glyceraldehyde_3-phosphate_dehydrogenase__NAD_binding_domain(100%)\|	.	.	ENSG00000111640	ENSG00000278996	.	.	downstream	upstream	mismatches(1)	.	.	.
5_8S_rRNA(2027),FP236383.3(121683)	FP236383.3	./+	+/+	21:8258960	21:8397769	intergenic	intron	deletion/read-through	0	0	0	386	77	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	duplicates(1)	.	.	.
FP671120.4	FP236383.3	+/+	+/+	21:8214737	21:8397769	intron	intron	deletion/read-through	0	0	0	81	77	low	.	.	.	.	.	ENSG00000278996	ENSG00000280441	.	.	downstream	upstream	duplicates(1)	.	.	.
FP236383.3	HNRNPK	+/+	-/-	21:8442880	9:83971983	intron	CDS	translocation	0	0	0	26	7	low	.	.	\|KH_domain(34%)	.	.	ENSG00000280441	ENSG00000165119	.	.	downstream	downstream	multimappers(1)	.	.	.
FP671120.4	HNRNPK	+/+	-/-	21:8215617	9:83971983	intron	CDS	translocation	0	1	0	27	7	low	.	.	\|KH_domain(34%)	.	.	ENSG00000278996	ENSG00000165119	.	.	downstream	downstream	min_support	.	.	.
ARPC2	AC079385.1	+/+	-/+	2:218254122	12:106594817	3'UTR	intron	translocation/5'-5'	0	0	0	4	0	low	.	.	Arp2/3_complex__34_kD_subunit_p34-Arc(100%)\|	.	.	ENSG00000163466	ENSG00000257545	.	.	downstream	upstream	homopolymer(1)	.	.	.
ZNF101	AC011458.2	+/+	-/+	19:19680007	19:19699286	CDS	exon	deletion/read-through/5'-5'	1	0	0	1	1	low	.	.	KRAB_box(100%),Zinc_finger__C2H2_type(62%)\|	.	.	ENSG00000181896	ENSG00000271283	.	.	downstream	upstream	min_support	.	.	.
FP671120.4	EIF3D	+/+	-/-	21:8215242	22:36524657	intron	CDS	translocation	0	0	0	8	20	low	.	.	\|Eukaryotic_translation_initiation_factor_3_subunit_7_(eIF-3)(84%)	.	.	ENSG00000278996	ENSG00000100353	.	.	downstream	downstream	mismatches(1)	.	.	.
5_8S_rRNA(2538),FP236383.3(121172)	EIF3D	./+	-/-	21:8259471	22:36524657	intergenic	CDS	translocation	0	0	0	8	20	low	.	.	\|Eukaryotic_translation_initiation_factor_3_subunit_7_(eIF-3)(84%)	.	.	.	ENSG00000100353	.	.	downstream	downstream	mismatches(1)	.	.	.
FP236383.3	EIF3D	+/+	-/-	21:8442505	22:36524657	intron	CDS	translocation	0	0	0	6	20	low	.	.	\|Eukaryotic_translation_initiation_factor_3_subunit_7_(eIF-3)(84%)	.	.	ENSG00000280441	ENSG00000100353	.	.	downstream	downstream	mismatches(1)	.	.	.
RNF213	FP236383.3	+/+	+/+	17:80289757	21:8394382	CDS	intron	translocation	0	0	0	12	8	low	.	.	.	.	.	ENSG00000173821	ENSG00000280441	.	.	downstream	upstream	multimappers(1)	.	.	.
ZNF766	ZNF766	+/+	+/+	19:52291147	19:52291064	CDS	CDS	duplication/ITD	0	0	0	2	2	low	.	.	KRAB_box(100%),Zinc_finger__C2H2_type(95%)\|Zinc_finger__C2H2_type(16%)	.	.	ENSG00000196214	ENSG00000196214	.	.	downstream	upstream	hairpin(1)	.	.	.
DHFR	LSM12	-/-	-/-	5:80650905	17:44066583	intron	CDS	translocation	0	0	0	0	5	low	.	.	Dihydrofolate_reductase(22%)\|Anticodon-binding_domain(100%)	.	.	ENSG00000228716	ENSG00000161654	.	.	upstream	downstream	mismatches(1)	.	.	.
FP236383.3	C1orf232	+/+	-/-	21:8444649	1:26164426	intron	CDS	translocation	0	0	0	59	0	low	.	.	.	.	.	ENSG00000280441	ENSG00000282872	.	.	downstream	downstream	mismatches(1)	.	.	.
RNF213	FP671120.4	+/+	+/+	17:80289757	21:8211347	CDS	intron	translocation	1	0	0	12	5	low	.	.	.	.	.	ENSG00000173821	ENSG00000278996	.	.	downstream	upstream	min_support	.	.	.
CNTLN	CNTLN	+/+	+/+	9:17236509	9:17236456	CDS	CDS	duplication/ITD	0	0	0	1	1	low	.	.	.	.	.	ENSG00000044459	ENSG00000044459	.	.	downstream	upstream	duplicates(1),hairpin(1)	.	.	.
USP7	AP003059.2	-/-	+/+	16:8923205	11:86764667	intron	intron	translocation	0	0	0	9	0	low	.	.	MATH_domain(43%)\|	.	.	ENSG00000187555	ENSG00000255250	.	.	upstream	upstream	mismatches(1)	.	.	.
5_8S_rRNA(1899),FP236383.3(121811)	RBM6	./+	+/+	21:8258832	3:49975333	intergenic	CDS	translocation	0	0	0	43	7	low	.	.	\|G-patch_domain(100%),OCRE_domain(100%)	.	.	.	ENSG00000004534	.	.	downstream	upstream	multimappers(1)	.	.	.
LMNA	NTRK1	+/+	+/+	1:156130773	1:156874906	CDS/splice-site	CDS/splice-site	deletion	1	0	0	6	1	low	.	.	Intermediate_filament_protein(39%)\|Protein_kinase_domain(100%),Tyrosine_kinase_receptor_A_trans-membrane_domain(95%)	.	.	ENSG00000160789	ENSG00000198400	.	.	downstream	upstream	min_support	.	.	.
LINC00486	METTL16	+/.	-/.	2:32916556	17:2420233	intron	CDS	translocation	0	0	0	489	5	low	.	.	.	.	.	ENSG00000230876	ENSG00000127804	.	.	downstream	downstream	low_entropy	.	.	.
AL671883.2	FP236383.5	+/+	-/-	6:31356896	21:8438526	exon	exon	translocation	0	0	0	21	21	low	.	.	.	.	.	ENSG00000271581	ENSG00000281181	.	.	downstream	downstream	mismatches	.	.	.
BAZ2A	GABRG2(243602),AC113414.1(17463)	-/-	./+	12:56611856	5:162406579	CDS	intergenic	translocation	1	0	0	3	0	low	.	.	.	.	.	ENSG00000076108	.	.	.	upstream	upstream	min_support	.	.	.
HLA-B	FP671120.6	-/.	-/.	6:31356896	21:8211281	CDS	exon	translocation/3'-3'	0	0	0	21	16	low	.	.	.	.	.	ENSG00000234745	ENSG00000280800	.	.	downstream	downstream	mismatches	.	.	.
DAND5(20681),NFIX(32)	AL136531.2	./+	-/-	19:12995443	20:1393013	intergenic	5'UTR	translocation	0	0	0	0	5	low	.	.	.	.	.	.	ENSG00000274322	.	.	downstream	downstream	mismatches(1)	.	.	.
MEF2A	LARP4	+/-	+/+	15:99610403	12:50429060	intron	CDS	translocation/3'-3'	0	0	0	0	4	low	.	.	\|La_domain(100%)	.	.	ENSG00000068305	ENSG00000161813	.	.	upstream	upstream	mismatches(1)	.	.	.
HLA-F	RPL23AP12	+/+	+/-	6:29726931	21:39127773	CDS	exon	translocation/5'-5'	0	1	0	0	1	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%),Immunoglobulin_C1-set_domain(100%)\|	.	.	ENSG00000204642	ENSG00000228861	.	.	downstream	downstream	min_support	.	.	.
AC138969.1	NPIPA7	+/+	+/+	16:16344085	16:16387490	CDS	CDS	deletion/read-through	0	0	0	7	0	low	.	.	Nuclear_pore_complex_interacting_protein_(NPIP)(21%)\|Nuclear_pore_complex_interacting_protein_(NPIP)(72%)	.	.	ENSG00000183889	ENSG00000214967	.	.	downstream	upstream	multimappers(1)	.	.	.
ERF	ERF	-/-	-/-	19:42248916	19:42249060	CDS	CDS	duplication	1	0	0	1	1	low	.	.	Ets-domain(100%)\|	.	.	ENSG00000105722	ENSG00000105722	.	.	upstream	downstream	intragenic_exonic	.	.	.
NPIPA2	NPIPA1	+/+	+/+	16:14758987	16:14945665	CDS	CDS	deletion/read-through	0	0	0	2	0	low	.	.	Nuclear_pore_complex_interacting_protein_(NPIP)(17%)\|Nuclear_pore_complex_interacting_protein_(NPIP)(72%)	.	.	ENSG00000254852	ENSG00000183426	.	.	downstream	upstream	multimappers(1)	.	.	.
CCZ1	CCZ1B	+/+	-/-	7:5923962	7:6801523	CDS/splice-site	CDS/splice-site	inversion	0	0	0	5	3	low	.	.	First_Longin_domain_of_INTU__CCZ1_and_HPS4(100%),Intu_longin-like_domain_2(100%),Intu_longin-like_domain_3(94%)\|Intu_longin-like_domain_3(100%)	.	.	ENSG00000122674	ENSG00000146574	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916556	21:8398683	intron	intron	translocation	0	0	0	489	21	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	downstream	upstream	low_entropy	.	.	.
AC126755.3	NPIPA8	+/+	-/+	16:18316979	16:18320649	exon	intron	deletion/read-through/5'-5'	0	0	0	2	1	low	.	.	.	.	.	ENSG00000276484	ENSG00000214940	.	.	downstream	upstream	read_through(1)	.	.	.
LINC00486	TRIM28	+/.	+/.	2:32916556	19:58549505	intron	CDS	translocation	0	0	0	489	6	low	.	.	.	.	.	ENSG00000230876	ENSG00000130726	.	.	downstream	upstream	low_entropy	.	.	.
PFN1	FP671120.4	-/-	+/+	17:4946752	21:8209881	CDS	intron	translocation	1	0	0	42	20	low	.	.	Profilin(47%)\|	.	.	ENSG00000108518	ENSG00000278996	.	.	upstream	upstream	min_support	.	.	.
BRD9	FP671120.4	-/-	+/+	5:891758	21:8211646	CDS	intron	translocation	0	0	0	9	1	low	.	.	.	.	.	ENSG00000028310	ENSG00000278996	.	.	upstream	upstream	mismatches(1)	.	.	.
BRD9	FP236383.3	-/-	+/+	5:891758	21:8438894	CDS	intron	translocation	0	0	0	9	3	low	.	.	.	.	.	ENSG00000028310	ENSG00000280441	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00486	FP236383.3	+/.	+/.	2:32916556	21:8441985	intron	intron	translocation	0	0	0	489	563	low	.	.	.	.	.	ENSG00000230876	ENSG00000280441	.	.	downstream	upstream	low_entropy	.	.	.
BRD9	FP671120.7(338),5_8S_rRNA(929)	-/-	./+	5:891758	21:8255852	CDS	intergenic	translocation	0	0	0	9	3	low	.	.	.	.	.	ENSG00000028310	.	.	.	upstream	upstream	mismatches(1)	.	.	.
BRAF	FP671120.6	-/-	-/+	7:140794373	21:8211169	CDS	exon	translocation/5'-5'	1	0	0	7	17	low	.	.	Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)(100%),Raf-like_Ras-binding_domain(100%)\|	.	.	ENSG00000157764	ENSG00000280800	.	.	upstream	upstream	min_support	.	.	.
PRDM12	FP671120.4	+/+	+/-	9:130681643	21:8217363	CDS	intron	translocation/5'-5'	0	0	0	0	83	low	.	.	Zinc_finger__C2H2_type(100%)\|	.	.	ENSG00000130711	ENSG00000278996	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	5_8S_rRNA(2011),FP236383.3(121699)	+/.	./.	2:32916555	21:8258944	intron	intergenic	translocation	0	0	0	489	511	low	.	.	.	.	.	ENSG00000230876	.	.	.	downstream	upstream	low_entropy	.	.	.
LINC00486	H3-3B	+/.	-/.	2:32916556	17:75778884	intron	CDS	translocation	0	0	0	489	16	low	.	.	.	.	.	ENSG00000230876	ENSG00000132475	.	.	downstream	downstream	low_entropy	.	.	.
CLK4	PARK7	-/-	+/+	5:178627213	1:7965336	intron	CDS	translocation	0	0	0	0	19	low	.	.	\|DJ-1/PfpI_family(82%)	.	.	ENSG00000113240	ENSG00000116288	.	.	upstream	upstream	mismatches(1)	.	.	.
SHLD2P1	SHLD2	-/-	+/+	10:46645176	10:87151350	exon/splice-site	5'UTR/splice-site	inversion	0	0	0	0	6	low	.	.	\|Protein_family_FAM35__C-terminal(100%)	.	.	ENSG00000165874	ENSG00000122376	.	.	upstream	upstream	multimappers(1)	.	.	.
YBX3	FP671120.4	-/-	+/+	12:10723008	21:8216096	CDS	intron	translocation	1	0	0	9	56	low	.	.	.	.	.	ENSG00000060138	ENSG00000278996	.	.	upstream	upstream	min_support	.	.	.
LINC00486	TENT4A	+/.	+/.	2:32916555	5:6751155	intron	CDS	translocation	0	0	0	489	2	low	.	.	.	.	.	ENSG00000230876	ENSG00000112941	.	.	downstream	upstream	low_entropy	.	.	.
YBX3	FP236383.3	-/-	+/+	12:10723008	21:8399130	CDS	intron	translocation	0	0	0	9	80	low	.	.	.	.	.	ENSG00000060138	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
SHLD2P3	SHLD2	+/+	+/+	10:47696510	10:87151350	exon/splice-site	5'UTR/splice-site	deletion	0	0	0	0	6	low	.	.	\|Protein_family_FAM35__C-terminal(100%)	.	.	ENSG00000189014	ENSG00000122376	.	.	downstream	upstream	multimappers(1)	.	.	.
COP1	LINC00486	-/.	+/.	1:176206744	2:32916555	CDS	intron	translocation	0	0	0	5	489	low	.	.	.	.	.	ENSG00000143207	ENSG00000230876	.	.	downstream	downstream	low_entropy	.	.	.
PAQR6(404),SMG5(703)	LARP4	./-	+/+	1:156248521	12:50429064	intergenic	CDS	translocation	0	0	0	0	4	low	.	.	\|La_domain(100%)	.	.	.	ENSG00000161813	.	.	upstream	upstream	mismatches(1)	.	.	.
DIAPH1	DIAPH1	-/-	-/-	5:141526057	5:141526115	CDS	CDS	duplication/ITD	0	0	0	7	7	low	.	.	Diaphanous_FH3_Domain(100%),Diaphanous_GTPase-binding_Domain(100%),Formin_Homology_2_Domain(100%),Formin_Homology_Region_1(100%)\|DRF_Autoregulatory_Domain(100%)	.	.	ENSG00000131504	ENSG00000131504	.	.	upstream	downstream	hairpin(1),inconsistently_clipped(1)	.	.	.
ATP6V0A1	ATP6V0A1	+/+	+/+	17:42501304	17:42498924	CDS/splice-site	CDS/splice-site	duplication/non-canonical_splicing	0	1	0	0	0	low	.	.	V-type_ATPase_116kDa_subunit_family__(80%)\|V-type_ATPase_116kDa_subunit_family__(37%)	.	.	ENSG00000033627	ENSG00000033627	.	.	downstream	upstream	min_support	.	.	.
FP671120.7(1085),5_8S_rRNA(182)	FP236383.3	./+	+/+	21:8256599	21:8400399	intergenic	intron	deletion/read-through	0	0	0	3	87	low	.	.	.	.	.	.	ENSG00000280441	.	.	downstream	upstream	mismatches(1)	.	.	.
LINC00486	MYH9	+/.	-/.	2:32916556	22:36292240	intron	intron	translocation	0	0	0	489	23	low	.	.	.	.	.	ENSG00000230876	ENSG00000100345	.	.	downstream	downstream	duplicates	.	.	.
LINC00486	TULP4	+/+	+/+	2:32916552	6:158501883	intron	CDS	translocation	0	0	0	489	1	low	.	.	\|Tub_family(100%)	.	.	ENSG00000230876	ENSG00000130338	.	.	downstream	upstream	inconsistently_clipped(1)	.	.	.
LINC00486	ANKRD17	+/.	-/.	2:32916555	4:73258551	intron	CDS	translocation	0	0	0	489	8	low	.	.	.	.	.	ENSG00000230876	ENSG00000132466	.	.	downstream	downstream	low_entropy	.	.	.
KDM1A	GATA3	+/+	+/-	1:23055146	10:8047171	CDS	intron	translocation/5'-5'	0	0	0	7	0	low	.	.	SWIRM_domain(100%)\|	.	.	ENSG00000004487	ENSG00000107485	.	.	downstream	downstream	mismatches(1)	.	.	.
FP236383.4	NCOR2	-/+	-/-	21:8394083	12:124342033	exon	CDS	translocation/3'-3'	0	0	0	37	1	low	.	.	.	.	.	ENSG00000280614	ENSG00000196498	.	.	downstream	downstream	multimappers(1)	.	.	.
KDM1A	LINC02527(118654),CCN6(26001)	+/+	./-	1:23055146	6:112028074	CDS	intergenic	translocation	0	0	0	7	0	low	.	.	SWIRM_domain(100%)\|	.	.	ENSG00000004487	.	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC00486	MDN1	+/.	-/.	2:32916550	6:89772648	intron	CDS	translocation	0	0	0	489	9	low	.	.	.	.	.	ENSG00000230876	ENSG00000112159	.	.	downstream	downstream	mismatches	.	.	.
DGKD	DGKD	+/+	+/+	2:233452061	2:233450935	intron	CDS	duplication	0	1	0	1	2	low	.	.	Diacylglycerol_kinase_catalytic_domain(100%),PH_domain(100%),Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)(100%)\|Diacylglycerol_kinase_accessory_domain(100%),SAM_domain_(Sterile_alpha_motif)(100%)	.	.	ENSG00000077044	ENSG00000077044	.	.	downstream	upstream	intragenic_exonic	.	.	.
RHBDF2	RHBDF2	-/-	-/-	17:76479264	17:76481524	CDS	CDS	duplication	1	0	0	0	0	low	.	.	\|Rhomboid_family(100%),Rhomboid_serine_protease(100%)	.	.	ENSG00000129667	ENSG00000129667	.	.	upstream	downstream	intragenic_exonic	.	.	.
GPR15	GPR15	+/+	+/+	3:98532757	3:98532312	CDS	CDS	duplication	1	0	0	3	2	low	.	.	7_transmembrane_receptor_(rhodopsin_family)(76%)\|7_transmembrane_receptor_(rhodopsin_family)(82%)	.	.	ENSG00000154165	ENSG00000154165	.	.	downstream	upstream	intragenic_exonic	.	.	.
PKN2	PKN2	+/+	+/+	1:88806017	1:88786104	CDS/splice-site	CDS/splice-site	duplication/non-canonical_splicing	0	1	0	0	3	low	.	.	Hr1_repeat(100%)\|Protein_kinase_C_terminal_domain(100%),Protein_kinase_domain(100%)	.	.	ENSG00000065243	ENSG00000065243	.	.	downstream	upstream	min_support	.	.	.
ATN1	ATN1	+/+	+/+	12:6936822	12:6936691	CDS	CDS	duplication	0	0	0	1	1	low	.	.	Atrophin-1_family(27%)\|Atrophin-1_family(77%)	.	.	ENSG00000111676	ENSG00000111676	.	.	downstream	upstream	hairpin(1)	.	.	.
LINC00486	HLA-A	+/.	+/.	2:32916555	6:29942768	intron	CDS	translocation	0	0	0	489	45	low	.	.	.	.	.	ENSG00000230876	ENSG00000206503	.	.	downstream	upstream	low_entropy	.	.	.
FP671120.4	NUMA1	+/+	-/-	21:8215269	11:72004093	intron	CDS	translocation	1	0	0	8	2	low	.	.	.	.	.	ENSG00000278996	ENSG00000137497	.	.	downstream	downstream	min_support	.	.	.
FP236383.3	NUMA1	+/+	-/-	21:8442532	11:72004093	intron	CDS	translocation	0	0	0	7	2	low	.	.	.	.	.	ENSG00000280441	ENSG00000137497	.	.	downstream	downstream	multimappers(1)	.	.	.
HLA-A	MROH5	+/+	-/-	6:29943541	8:141490985	CDS/splice-site	intron	translocation	0	0	0	8	0	low	.	.	Class_I_Histocompatibility_antigen__domains_alpha_1_and_2(100%)\|	.	.	ENSG00000206503	ENSG00000226807	.	.	downstream	downstream	mismatches(1)	.	.	.
LINC01695	FP236383.3	-/-	+/+	21:28176597	21:8443165	intron	intron	inversion	0	1	0	0	16	low	.	.	.	.	.	ENSG00000236532	ENSG00000280441	.	.	upstream	upstream	min_support	.	.	.
LINC00486	RAB21	+/.	+/.	2:32916553	12:71755060	intron	5'UTR	translocation	0	0	0	489	6	low	.	.	.	.	.	ENSG00000230876	ENSG00000080371	.	.	downstream	upstream	low_entropy	.	.	.
GCNT1	FP671120.4	+/+	+/+	9:76571808	21:8218672	intron	intron	translocation	0	0	0	2	34	low	.	.	Core-2/I-Branching_enzyme(100%)\|	.	.	ENSG00000187210	ENSG00000278996	.	.	downstream	upstream	homopolymer(1)	.	.	.
ACTG1	ACTBP7	-/-	-/-	17:81512006	15:43989992	CDS	exon	translocation	0	0	0	53	0	low	.	.	Actin(22%)\|	.	.	ENSG00000184009	ENSG00000185607	.	.	upstream	downstream	mismatches(1)	.	.	.
MFSD14B	PDCD11	+/-	+/+	9:94417851	10:103425192	intron	CDS	translocation/3'-3'	0	0	0	0	5	low	.	.	\|S1_RNA_binding_domain(23%),Suppressor_of_forked_protein_(Suf)(100%)	.	.	ENSG00000148110	ENSG00000148843	.	.	upstream	upstream	homopolymer(1)	.	.	.
AC145207.2	LINC00486	+/+	+/-	17:81868406	2:32916555	exon	intron	translocation/5'-5'	0	0	0	7	489	low	.	.	.	.	.	ENSG00000262413	ENSG00000230876	.	.	downstream	downstream	low_entropy	.	.	.
SLC39A9	ERH	+/-	-/-	14:69398231	14:69394912	exon	CDS/splice-site	deletion/read-through/3'-3'	0	0	0	1	1	low	.	.	\|Enhancer_of_rudimentary(100%)	.	.	ENSG00000029364	ENSG00000100632	.	.	upstream	downstream	read_through(1)	.	.	.
LINC00486	SYNRG	+/.	-/.	2:32916554	17:37586462	intron	CDS	translocation	0	0	0	489	8	low	.	.	.	.	.	ENSG00000230876	ENSG00000275066	.	.	downstream	downstream	low_entropy	.	.	.
CR392039.1(295),CR392039.3(8771)	FP236383.3	./-	+/+	21:8987725	21:8397807	intergenic	intron	inversion	0	0	0	4	119	low	.	.	.	.	.	.	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
FP671120.3(3249),FP671120.7(1194)	5_8S_rRNA(2069),FP236383.3(121641)	./-	./+	21:8253398	21:8259002	intergenic	intergenic	inversion	0	0	0	6	491	low	.	.	.	.	.	.	.	.	.	upstream	upstream	multimappers(1)	.	.	.
FP236383.3	5_8S_rRNA(2069),FP236383.3(121641)	+/-	./+	21:8436432	21:8259002	intron	intergenic	inversion	0	0	0	6	491	low	.	.	.	.	.	ENSG00000280441	.	.	.	upstream	upstream	multimappers(1)	.	.	.
LINC00486	5_8S_rRNA(1976),FP236383.3(121734)	+/.	./.	2:32916556	21:8258909	intron	intergenic	translocation	0	0	0	489	386	low	.	.	.	.	.	ENSG00000230876	.	.	.	downstream	upstream	low_entropy	.	.	.
CR392039.1(295),CR392039.3(8771)	FP671120.4	./-	+/+	21:8987725	21:8214773	intergenic	intron	inversion	0	0	0	4	165	low	.	.	.	.	.	.	ENSG00000278996	.	.	upstream	upstream	multimappers(1)	.	.	.
ACTG1	ACTG1P1	-/-	+/+	17:81512006	3:139494004	CDS	exon	translocation	0	0	0	53	0	low	.	.	Actin(22%)\|	.	.	ENSG00000184009	ENSG00000178631	.	.	upstream	upstream	mismatches(1)	.	.	.
LINC00486	FOXO1	+/.	-/.	2:32916555	13:40666276	intron	5'UTR	translocation	0	0	0	489	4	low	.	.	.	.	.	ENSG00000230876	ENSG00000150907	.	.	downstream	downstream	mismatches	.	.	.
FP236383.3	FP671120.4	+/-	+/+	21:8436432	21:8214773	intron	intron	inversion/3'-3'	0	0	0	6	165	low	.	.	.	.	.	ENSG00000280441	ENSG00000278996	.	.	upstream	upstream	multimappers(1)	.	.	.
NOL4L	MDM4	-/-	+/+	20:32584086	1:204544596	intron	CDS	translocation	0	0	0	0	2	low	.	.	\|Zinc_finger__C3HC4_type_(RING_finger)(100%),Zn-finger_in_Ran_binding_protein_and_others(100%)	.	.	ENSG00000197183	ENSG00000198625	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
NOL4L-DT	MDM4	+/-	+/+	20:32584086	1:204544596	intron	CDS	translocation/3'-3'	0	0	0	0	2	low	.	.	\|Zinc_finger__C3HC4_type_(RING_finger)(100%),Zn-finger_in_Ran_binding_protein_and_others(100%)	.	.	ENSG00000204393	ENSG00000198625	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
AL133343.1	MDM4	+/-	+/+	20:32584086	1:204544596	intron	CDS	translocation/3'-3'	0	0	0	0	2	low	.	.	\|Zinc_finger__C3HC4_type_(RING_finger)(100%),Zn-finger_in_Ran_binding_protein_and_others(100%)	.	.	ENSG00000228156	ENSG00000198625	.	.	upstream	upstream	inconsistently_clipped(1)	.	.	.
HARS1	FP236383.3	-/-	+/+	5:140691215	21:8397855	CDS/splice-site	intron	translocation	0	0	0	6	76	low	.	.	WHEP-TRS_domain(61%)\|	.	.	ENSG00000170445	ENSG00000280441	.	.	upstream	upstream	multimappers(1)	.	.	.
HARS1	FP671120.4	-/-	+/+	5:140691215	21:8214821	CDS/splice-site	intron	translocation	1	0	0	6	123	low	.	.	WHEP-TRS_domain(61%)\|	.	.	ENSG00000170445	ENSG00000278996	.	.	upstream	upstream	in_vitro	.	.	.

2689 rows