#id: 'seqtools_metrics' #plot_type: 'generalstats' #pconfig: # reads: # namespace: 'SeqTools' # title: 'Reads' # description: 'SeqTools Reads' # format: '{:,.0f}' # min: 0 # frac_unmapped: # namespace: 'SeqTools' # title: 'Frac Unmapped' # description: 'SeqTools Frac Unmapped' # format: '{:,.2f}' # unique_reads: # namespace: 'SeqTools' # title: 'Unique Reads' # description: 'SeqTools Unique Reads' # format: '{:,.0f}' # min: 0 # frac_dupes: # namespace: 'SeqTools' # title: 'Frac Dupes' # description: 'SeqTools Frac Dupes' # format: '{:,.2f}' # frac_reads_on_target: # namespace: 'SeqTools' # title: 'Frac Reads On Target' # description: 'SeqTools Frac Reads On Target' # format: '{:,.0f}' # min: 0 # frac_reads_off_target: # namespace: 'SeqTools' # title: 'Frac Reads Off Target' # description: 'SeqTools Frac Reads Off Target' # format: '{:,.0f}' # min: 0 # n_q30: # namespace: 'SeqTools' # title: 'N Q30' # description: 'SeqTools N Q30' # format: '{:,.2f}' # mean_depth: # namespace: 'SeqTools' # title: 'Mean Depth' # description: 'SeqTools Mean Depth' # format: '{:,.2f}' # q50_depth: # namespace: 'SeqTools' # title: 'Q50 Depth' # description: 'SeqTools Q50 Depth' # format: '{:,.2f}' # frac_bases_gt30x: # namespace: 'SeqTools' # title: 'Frac Bases Gt30X' # description: 'SeqTools Frac Bases Gt30X' # format: '{:,.0f}' # min: 0 # frac_bases_gt100x: # namespace: 'SeqTools' # title: 'Frac Bases Gt100X' # description: 'SeqTools Frac Bases Gt100X' # format: '{:,.0f}' # min: 0 # gc_bias: # namespace: 'SeqTools' # title: 'GC Bias' # description: 'Ratio of high GC (63-100%) to low GC (0-43%) reads' # format: '{:,.3f}' # min: 0 # scale: 'RdYlGn' Sample reads frac_unmapped unique_reads frac_dupes frac_reads_on_target frac_reads_off_target n_q30 mean_depth q50_depth frac_bases_gt30x frac_bases_gt100x gc_bias 'rna_s1221_S42' 198648 0.004047 197698 0.004782 0.929013 0.06692 0.985339 0.40779 0.0 0.000548 1.4e-05 0.0