File Info

Filename
rna_s1221_S42.Log.final.out
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/sm_testing/small_test_SMR_v3_cd574a28e_test/star_for_arriba/rna_s1221_S42.Log.final.out
Size
2.0 KB
Published
Feb 25, 2026 6:11 PM
                                 Started job on |	Feb 26 02:10:09
                             Started mapping on |	Feb 26 02:11:38
                                    Finished on |	Feb 26 02:11:48
       Mapping speed, Million of reads per hour |	35.76

                          Number of input reads |	99324
                      Average input read length |	276
                                    UNIQUE READS:
                   Uniquely mapped reads number |	94071
                        Uniquely mapped reads % |	94.71%
                          Average mapped length |	277.29
                       Number of splices: Total |	124205
            Number of splices: Annotated (sjdb) |	122931
                       Number of splices: GT/AG |	122933
                       Number of splices: GC/AG |	857
                       Number of splices: AT/AC |	123
               Number of splices: Non-canonical |	292
                      Mismatch rate per base, % |	0.14%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.18
                        Insertion rate per base |	0.00%
                       Insertion average length |	2.04
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	4047
             % of reads mapped to multiple loci |	4.07%
        Number of reads mapped to too many loci |	0
             % of reads mapped to too many loci |	0.00%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	99
       % of reads unmapped: too many mismatches |	0.10%
            Number of reads unmapped: too short |	457
                 % of reads unmapped: too short |	0.46%
                Number of reads unmapped: other |	69
                     % of reads unmapped: other |	0.07%
                                  CHIMERIC READS:
                       Number of chimeric reads |	961
                            % of chimeric reads |	0.97%