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Filename
rna_s1221_S42_kallisto_mqc.tsv
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s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/sm_testing/small_test_SMR_v3_cd574a28e_test/kallisto/rna_s1221_S42_kallisto_mqc.tsv
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2.5 KB
Workflow Run
small_test_SMR_v4_cd574a28e_test
Published
Feb 25, 2026 6:12 PM

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#id: 'kallisto_qc_metrics'
#plot_type: 'generalstats'
#pconfig:
# fragment_length_mean:
# namespace: 'Kallisto'
# title: 'Fragment Length Mean'
# description: 'Mean fragment length from kallisto fragment length distribution'
# format: '{:,.1f}'
# min: 0
# suffix: ' bp'
# fragment_length_median:
# namespace: 'Kallisto'
# title: 'Fragment Length Median'
# description: 'Median fragment length from kallisto fragment length distribution'
# format: '{:,.1f}'
# min: 0
# suffix: ' bp'
# pct_mito_est_counts:
# namespace: 'Expression QC'
# title: 'pct Mito est. counts'
# description: 'Percentage of estimated counts from mitochondrial genes; high values can indicate cell damage or stress.'
# format: '{:,.2f}'
# suffix: '%'
# pct_ribo_est_counts:
# namespace: 'Expression QC'
# title: 'pct Ribo est. counts'
# description: 'Percentage of estimated counts from ribosomal genes; useful for assessing RNA quality and technical variation.'
# format: '{:,.2f}'
# suffix: '%'
# pct_hk_est_counts:
# namespace: 'Expression QC'
# title: 'pct Housekeeping est. counts'
# description: 'Percentage of estimated counts from housekeeping genes.'
# format: '{:,.2f}'
# suffix: '%'
# pct_male_est_counts:
# namespace: 'Expression QC'
# title: 'pct Male est. counts'
# format: '{:,.2f}'
# suffix: '%'
# pct_mito_tpm:
# namespace: 'Expression QC'
# title: 'pct Mito TPM'
# description: 'Percentage of TPM from mitochondrial genes; high values can indicate cell damage or stress.'
# format: '{:,.2f}'
# suffix: '%'
# pct_ribo_tpm:
# namespace: 'Expression QC'
# title: 'pct Ribo TPM'
# description: 'Percentage of TPM from ribosomal genes; useful for assessing RNA quality and technical variation.'
# format: '{:,.2f}'
# suffix: '%'
# pct_hk_tpm:
# namespace: 'Expression QC'
# title: 'pct Housekeeping TPM'
# description: 'Percentage of TPM from housekeeping genes.'
# format: '{:,.2f}'
# suffix: '%'
# pct_male_tpm:
# namespace: 'Expression QC'
# title: 'pct Male TPM'
# format: '{:,.2f}'
# suffix: '%'
Sample fragment_length_mean fragment_length_median pct_mito_est_counts pct_ribo_est_counts pct_hk_est_counts pct_male_est_counts pct_mito_tpm pct_ribo_tpm pct_hk_tpm pct_male_tpm
'rna_s1221_S42' 175.7 160.0 0.01 4.63 2.77 0.0 0.01 9.92 2.85 0.0
65 rows