File Info

Filename
rna_s1221_S42.Log.final.out
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/sm_testing/small_test_SMR_v3_cd574a28e_test/star_for_starfusion/rna_s1221_S42.Log.final.out
Size
2.0 KB
Published
Feb 25, 2026 6:13 PM
                                 Started job on |	Feb 26 02:10:04
                             Started mapping on |	Feb 26 02:12:55
                                    Finished on |	Feb 26 02:13:06
       Mapping speed, Million of reads per hour |	32.51

                          Number of input reads |	99324
                      Average input read length |	276
                                    UNIQUE READS:
                   Uniquely mapped reads number |	93870
                        Uniquely mapped reads % |	94.51%
                          Average mapped length |	276.83
                       Number of splices: Total |	112862
            Number of splices: Annotated (sjdb) |	112709
                       Number of splices: GT/AG |	111802
                       Number of splices: GC/AG |	806
                       Number of splices: AT/AC |	111
               Number of splices: Non-canonical |	143
                      Mismatch rate per base, % |	0.15%
                         Deletion rate per base |	0.00%
                        Deletion average length |	1.12
                        Insertion rate per base |	0.00%
                       Insertion average length |	2.04
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	4119
             % of reads mapped to multiple loci |	4.15%
        Number of reads mapped to too many loci |	12
             % of reads mapped to too many loci |	0.01%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	162
       % of reads unmapped: too many mismatches |	0.16%
            Number of reads unmapped: too short |	478
                 % of reads unmapped: too short |	0.48%
                Number of reads unmapped: other |	68
                     % of reads unmapped: other |	0.07%
                                  CHIMERIC READS:
                       Number of chimeric reads |	933
                            % of chimeric reads |	0.94%