File Info
- Filename
- multiqc_general_stats.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/sm_testing/small_test_SMR_v3_cd574a28e_test/QC/multiqc/multiqc_data/multiqc_general_stats.tsv
- Size
- 2.0 KB
- Workflow Run
- small_test_SMR_v4_cd574a28e_test
- Published
- Feb 25, 2026 6:30 PM
Content
View in new tab| sample_id | READS | FRAC_UNMAPPED | UNIQUE_READS | FRAC_DUPES | FRAC_READS_ON_TARGET | FRAC_READS_OFF_TARGET | N_Q30 | MEAN_DEPTH | Q50_DEPTH | FRAC_BASES_GT30X | FRAC_BASES_GT100X | GC_BIAS | FRAGMENT_LENGTH_MEAN | FRAGMENT_LENGTH_MEDIAN | PCT_MITO_EST_COUNTS | PCT_RIBO_EST_COUNTS | PCT_HK_EST_COUNTS | PCT_MALE_EST_COUNTS | PCT_MITO_TPM | PCT_RIBO_TPM | PCT_HK_TPM | PCT_MALE_TPM | TOTAL_READS | EXPECTED_DISTINCT | IS_CONTAMINATED | CONTAMINATION_PCT | SUMMED_MEDIAN | SUMMED_MEAN | PERCENT_DUPLICATION | PCT_RIBOSOMAL_BASES | PCT_MRNA_BASES | PROPER_PAIRS_PERCENT | UNIQUELY_MAPPED_PERCENT | UNIQUELY_MAPPED | PCT_DUPLICATION | AFTER_FILTERING_Q30_RATE | AFTER_FILTERING_Q30_BASES | FILTERING_RESULT_PASSED_FILTER_READS | AFTER_FILTERING_GC_CONTENT | PCT_SURVIVING | PCT_ADAPTER | FRAGMENT_LENGTH | PERCENT_ALIGNED | PSEUDOALIGNED_READS | PERCENT_DUPLICATES | PERCENT_GC | AVG_SEQUENCE_LENGTH | MEDIAN_SEQUENCE_LENGTH | PERCENT_FAILS | TOTAL_SEQUENCES | PERCENT_DUPLICATES | PERCENT_GC | AVG_SEQUENCE_LENGTH | MEDIAN_SEQUENCE_LENGTH | PERCENT_FAILS | TOTAL_SEQUENCES |
| rna_s1221_S42 | 198648.0 | 0.004047 | 197698.0 | 0.004782 | 0.929013 | 0.06692 | 0.985339 | 0.40779 | 0.0 | 0.000548 | 1.4e-05 | 0.0 | 175.7 | 160.0 | 0.01 | 4.63 | 2.77 | 0.0 | 0.01 | 9.92 | 2.85 | 0.0 | 9999000000.0 | 27648701.0 | Yes | 100.0 | 257 | 671.422208 | 0.004802 | 0.09709999999999999 | 95.2501 | 81.8293889882451 | 94.51 | 93870.0 | 0.296 | 0.984327 | 27074202.0 | 198648.0 | 0.533239 | 99.324 | 36.754999999999995 | |||||||||||||||
| rna_s1221_S42_1 | 175.674 | 96.40570254923281 | 95754.0 | 7.950999999999993 | 52.0 | 150.0 | 150 | 18.181818181818183 | 100000.0 | |||||||||||||||||||||||||||||||||||||||||||||||
| rna_s1221_S42_2 | 5.337999999999994 | 53.0 | 150.0 | 150 | 9.090909090909092 | 100000.0 | ||||||||||||||||||||||||||||||||||||||||||||||||||
| rna_s1221_S42_trimmed_1 | 7.955781080101488 | 53.0 | 138.44392090531997 | 150 | 9.090909090909092 | 99324.0 | 7.955781080101488 | 53.0 | 138.44392090531997 | 150 | 9.090909090909092 | 99324.0 | ||||||||||||||||||||||||||||||||||||||||||||
| rna_s1221_S42_trimmed_2 | 5.217268736659818 | 53.0 | 138.45764367121743 | 150 | 0.0 | 99324.0 | 5.217268736659818 | 53.0 | 138.45764367121743 | 150 | 0.0 | 99324.0 |
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