multiqc_general_stats.json - Workflow Tracker

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Filename: multiqc_general_stats.json
Full Path: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/sm_testing/small_test_SMR_v3_cd574a28e_test/QC/multiqc/multiqc_data/multiqc_general_stats.json
Size: 28.7 KB
Workflow Run: small_test_SMR_v4_cd574a28e_test
Published: Feb 25, 2026 6:30 PM
Content

{
  "source_file": "multiqc_general_stats.txt",
  "total_samples": 5,
  "metrics": [
    "Sample",
    "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-reads",
    "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-frac_unmapped",
    "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-unique_reads",
    "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-frac_dupes",
    "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-frac_reads_on_target",
    "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-frac_reads_off_target",
    "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-n_q30",
    "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-mean_depth",
    "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-q50_depth",
    "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-frac_bases_gt30x",
    "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-frac_bases_gt100x",
    "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-gc_bias",
    "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean",
    "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median",
    "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts",
    "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts",
    "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts",
    "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts",
    "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm",
    "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm",
    "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm",
    "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm",
    "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads",
    "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct",
    "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated",
    "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct",
    "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median",
    "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean",
    "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION",
    "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES",
    "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES",
    "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent",
    "STAR_mqc-generalstats-star-uniquely_mapped_percent",
    "STAR_mqc-generalstats-star-uniquely_mapped",
    "fastp_mqc-generalstats-fastp-pct_duplication",
    "fastp_mqc-generalstats-fastp-after_filtering_q30_rate",
    "fastp_mqc-generalstats-fastp-after_filtering_q30_bases",
    "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads",
    "fastp_mqc-generalstats-fastp-after_filtering_gc_content",
    "fastp_mqc-generalstats-fastp-pct_surviving",
    "fastp_mqc-generalstats-fastp-pct_adapter",
    "Kallisto_mqc-generalstats-kallisto-fragment_length",
    "Kallisto_mqc-generalstats-kallisto-percent_aligned",
    "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads",
    "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates",
    "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc",
    "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length",
    "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length",
    "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails",
    "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences",
    "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates",
    "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc",
    "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length",
    "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length",
    "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails",
    "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences"
  ],
  "samples": [
    {
      "Sample": "rna_s1221_S42",
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-reads": 198648,
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-frac_unmapped": 0.004047,
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-unique_reads": 197698,
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-frac_dupes": 0.004782,
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-frac_reads_on_target": 0.929013,
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-frac_reads_off_target": 0.06692,
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-n_q30": 0.985339,
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-mean_depth": 0.40779,
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-q50_depth": 0,
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-frac_bases_gt30x": 0.000548,
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-frac_bases_gt100x": 1.4e-05,
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-gc_bias": 0,
      "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": 175.7,
      "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": 160,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": 0.01,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": 4.63,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": 2.77,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": 0,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": 0.01,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": 9.92,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": 2.85,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": 0,
      "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": 9999000000,
      "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": 27648701,
      "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": "Yes",
      "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": 100,
      "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": 257,
      "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": 671.422208,
      "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": 0.004802,
      "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": 0.09709999999999999,
      "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": 95.2501,
      "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": 81.8293889882451,
      "STAR_mqc-generalstats-star-uniquely_mapped_percent": 94.51,
      "STAR_mqc-generalstats-star-uniquely_mapped": 93870,
      "fastp_mqc-generalstats-fastp-pct_duplication": 0.296,
      "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": 0.984327,
      "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": 27074202,
      "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": 198648,
      "fastp_mqc-generalstats-fastp-after_filtering_gc_content": 0.533239,
      "fastp_mqc-generalstats-fastp-pct_surviving": 99.324,
      "fastp_mqc-generalstats-fastp-pct_adapter": 36.754999999999995,
      "Kallisto_mqc-generalstats-kallisto-fragment_length": null,
      "Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
      "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": null,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": null,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": null,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": null,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": null,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": null,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null
    },
    {
      "Sample": "rna_s1221_S42_1",
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-reads": null,
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-frac_unmapped": null,
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-unique_reads": null,
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-frac_dupes": null,
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-frac_reads_on_target": null,
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-frac_reads_off_target": null,
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-n_q30": null,
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-mean_depth": null,
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-q50_depth": null,
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-frac_bases_gt30x": null,
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-frac_bases_gt100x": null,
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-gc_bias": null,
      "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
      "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
      "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
      "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
      "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
      "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
      "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null,
      "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null,
      "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
      "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null,
      "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null,
      "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null,
      "STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
      "STAR_mqc-generalstats-star-uniquely_mapped": null,
      "fastp_mqc-generalstats-fastp-pct_duplication": null,
      "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
      "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
      "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
      "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
      "fastp_mqc-generalstats-fastp-pct_surviving": null,
      "fastp_mqc-generalstats-fastp-pct_adapter": null,
      "Kallisto_mqc-generalstats-kallisto-fragment_length": 175.674,
      "Kallisto_mqc-generalstats-kallisto-percent_aligned": 96.40570254923281,
      "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": 95754,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 7.950999999999993,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 52,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 150,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 150,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 18.181818181818183,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 100000,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null
    },
    {
      "Sample": "rna_s1221_S42_2",
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-reads": null,
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-frac_unmapped": null,
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-unique_reads": null,
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-frac_dupes": null,
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-frac_reads_on_target": null,
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-frac_reads_off_target": null,
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-n_q30": null,
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-mean_depth": null,
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-q50_depth": null,
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-frac_bases_gt30x": null,
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-frac_bases_gt100x": null,
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-gc_bias": null,
      "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
      "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
      "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
      "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
      "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
      "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
      "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null,
      "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null,
      "Picard: Mark Duplicates_mqc-generalstats-picard_mark_duplicates-PERCENT_DUPLICATION": null,
      "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_RIBOSOMAL_BASES": null,
      "Picard: RnaSeqMetrics_mqc-generalstats-picard_rnaseqmetrics-PCT_MRNA_BASES": null,
      "RSeQC_mqc-generalstats-rseqc-proper_pairs_percent": null,
      "STAR_mqc-generalstats-star-uniquely_mapped_percent": null,
      "STAR_mqc-generalstats-star-uniquely_mapped": null,
      "fastp_mqc-generalstats-fastp-pct_duplication": null,
      "fastp_mqc-generalstats-fastp-after_filtering_q30_rate": null,
      "fastp_mqc-generalstats-fastp-after_filtering_q30_bases": null,
      "fastp_mqc-generalstats-fastp-filtering_result_passed_filter_reads": null,
      "fastp_mqc-generalstats-fastp-after_filtering_gc_content": null,
      "fastp_mqc-generalstats-fastp-pct_surviving": null,
      "fastp_mqc-generalstats-fastp-pct_adapter": null,
      "Kallisto_mqc-generalstats-kallisto-fragment_length": null,
      "Kallisto_mqc-generalstats-kallisto-percent_aligned": null,
      "Kallisto_mqc-generalstats-kallisto-pseudoaligned_reads": null,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates": 5.337999999999994,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc": 53,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length": 150,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length": 150,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails": 9.090909090909092,
      "FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences": 100000,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates": null,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc": null,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length": null,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length": null,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails": null,
      "FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences": null
    },
    {
      "Sample": "rna_s1221_S42_trimmed_1",
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-reads": null,
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-frac_unmapped": null,
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-unique_reads": null,
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-frac_dupes": null,
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-frac_reads_on_target": null,
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-frac_reads_off_target": null,
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-n_q30": null,
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-mean_depth": null,
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-q50_depth": null,
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-frac_bases_gt30x": null,
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-frac_bases_gt100x": null,
      "Custom content: SeqTools_mqc-generalstats-custom_content_seqtools-gc_bias": null,
      "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_mean": null,
      "Custom content: Kallisto_mqc-generalstats-custom_content_kallisto-fragment_length_median": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_est_counts": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_est_counts": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_est_counts": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_est_counts": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_mito_tpm": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_ribo_tpm": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_hk_tpm": null,
      "Custom content: Expression QC_mqc-generalstats-custom_content_expression_qc-pct_male_tpm": null,
      "Custom content: Preseq_mqc-generalstats-custom_content_preseq-total_reads": null,
      "Custom content: Preseq_mqc-generalstats-custom_content_preseq-expected_distinct": null,
      "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-is_contaminated": null,
      "Custom content: RNA contamination_mqc-generalstats-custom_content_rna_contamination-contamination_pct": null,
      "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_median": null,
      "Picard: InsertSizeMetrics_mqc-generalstats-picard_insertsizemetrics-summed_mean": null,
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