succeeded COPY_INPUT_TO_OUTDIR (copy_input) 15s 13s - - 0 bytes 60% 68.6 KB 491 bytes 0 bytes 4.0 KB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:ARRIBA_WORKFLOW:ARRIBA (rna_s1221_S42) 53s 2s 29s 22s 4.1 GB 100% 4.3 GB 596.0 KB 0 bytes 592.0 KB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:ARRIBA_WORKFLOW:SAMTOOLS_INDEX_FOR_ARRIBA (rna_s1221_S42) 4s 3s - - 3.2 MB 119% 5.8 MB 5.5 KB 0 bytes 12.0 KB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:ARRIBA_WORKFLOW:SAMTOOLS_SORT_FOR_ARRIBA (rna_s1221_S42) 1m 29s 1m 25s - - 26.3 MB 347% 68.3 MB 11.6 MB 0 bytes 11.6 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:ARRIBA_WORKFLOW:SAMTOOLS_VIEW_FOR_ARRIBA (rna_s1221_S42) 1m 10s 4s 46s 20s 1.5 GB 227% 2.9 GB 5.7 MB 0 bytes 5.7 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:ARRIBA_WORKFLOW:STAR_FOR_ARRIBA (rna_s1221_S42) 4m 19s 4s 1m 39s 2m 36s 32.0 GB 114% 30.0 GB 184.9 MB 2.7 GB 184.9 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:CANCER_INTRONS_TO_VCF (rna_s1221_S42) 7s 6s - - 12.8 MB 106% 1.1 MB 3.0 KB 0 bytes 12.0 KB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:CONTAMINATION_TO_MULTIQC (rna_s1221_S42) 6s 4s 0s 1s 13.5 MB 78% 1.1 MB 1.0 KB 0 bytes 8.0 KB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:CTATSPLICING_STARTOCANCERINTRONS (rna_s1221_S42) 2m 35s 17s 3s 2m 14s 446.6 MB 400% 71.3 MB 2.0 MB 58.0 MB 2.0 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:FASTQC (rna_s1221_S42) 16s 11s 3s 2s 688.1 MB 200% 24.1 MB 4.2 MB 0 bytes 4.5 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:AGAT_CONVERTSPGFF2TSV (rna_s1221_S42) 21s 18s 1s 2s 58.3 MB 101% 7.8 MB 156.6 KB 0 bytes 156.0 KB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:ARRIBA_VISUALISATION (rna_s1221_S42) 55s 41s 5s 9s 495.1 MB 361% 30.9 MB 16.3 KB 0 bytes 20.0 KB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:FUSIONINSPECTOR (rna_s1221_S42) 8m 51s 2s 6m 37s 2m 11s 35.8 GB 101% 29.4 GB 55.9 MB 608.1 MB 23.1 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:VCF_COLLECT (rna_s1221_S42) 13s 10s 1s 2s 183.6 MB 638% 31.0 MB 4.6 KB 0 bytes 20.0 KB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (rna_s1221_S42) 13s 8s 1s 3s 27.0 MB 895% 50.3 MB 3.8 MB 0 bytes 3.8 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:GTF2BED (ref_annot.gtf) 36s 4s 20s 12s 2.9 GB 100% 1.3 GB 27.7 MB 0 bytes 27.7 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:KALLISTO_INDEX (Homo_sapiens.GRCh38.102.cdna.all.fa.gz) 4m 40s 5s 4m 29s 6s 2.7 GB 100% 1.7 GB 605.9 MB 0 bytes 605.9 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:KALLISTO_QUANT (rna_s1221_S42) 24s 4s 12s 8s 1.3 GB 201% 357.6 MB 8.5 MB 0 bytes 8.5 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_MULTIQC (rna_s1221_S42) 3s 1s 0s 1s 12.8 MB 4379% 4.7 MB 3.4 KB 0 bytes 8.0 KB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_TX2GENE_QC (rna_s1221_S42) 9s 6s 1s 2s 228.1 MB 1031% 43.6 MB 1.2 MB 0 bytes 1.2 MB 1
49 items found |