File Info
- Filename
- rna_s1221_S42.starfusion.starfusion.fusion_predictions.filtered.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/sm_testing/small_test_SMR_v5_1bb6229e_test/starfusion/rna_s1221_S42.starfusion.starfusion.fusion_predictions.filtered.tsv
- Size
- 4.4 KB
- Workflow Run
- small_test_SMR_v5_1bb6229e_test
- Published
- Feb 26, 2026 5:31 PM
Content
View in new tab| #FusionName | JunctionReadCount | SpanningFragCount | est_J | est_S | SpliceType | LeftGene | LeftBreakpoint | RightGene | RightBreakpoint | JunctionReads | SpanningFrags | LargeAnchorSupport | FFPM | LeftBreakDinuc | LeftBreakEntropy | RightBreakDinuc | RightBreakEntropy | annots | breakpoint_ID | blacklisted | blacklist_reasons | CALL | filter_reason | FILTER | total_reads |
| ZFC3H1--CBWD3 | 1 | 0 | 0.33 | 0.0 | INCL_NON_REF_SPLICE | ZFC3H1^ENSG00000133858.17 | chr12:71663013:- | CBWD3^ENSG00000196873.16 | chr9:68298918:+ | &rna_s1221_S42@LH00166:156:2373MLLT3:8:1211:4393:22358 | . | NO_LDAS | 3.3225 | GT | 1.9329 | AG | 1.9086 | ["INTERCHROMOSOMAL[chr12--chr9]"] | chr12:71663013-chr9:68298918 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| SLC45A3--BRAF | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | SLC45A3^ENSG00000158715.6 | chr1:205680394:- | BRAF^ENSG00000157764.14 | chr7:140794467:- | &rna_s1221_S42@LH00166:156:2373MLLT3:8:1191:44817:12552 | . | YES_LDAS | 10.0681 | GT | 1.5628 | AG | 1.7465 | ["ChimerKB","ChimerPub","Cosmic","ChimerSeq","INTERCHROMOSOMAL[chr1--chr7]"] | chr1:205680394-chr7:140794467 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| SEPTIN14--AL031259.1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | SEPTIN14^ENSG00000154997.9 | chr7:55795924:- | AL031259.1^ENSG00000287411.1 | chr6:170614324:+ | &rna_s1221_S42@LH00166:156:2373MLLT3:6:2189:39538:9300 | . | YES_LDAS | 10.0681 | GT | 1.5546 | AG | 1.9086 | ["INTERCHROMOSOMAL[chr7--chr6]"] | chr7:55795924-chr6:170614324 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| NUP188--TGM1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | NUP188^ENSG00000095319.14 | chr9:129005776:+ | TGM1^ENSG00000092295.12 | chr14:24264404:- | &rna_s1221_S42@LH00166:156:2373MLLT3:1:1140:27305:19506 | . | NO_LDAS | 10.0681 | GT | 1.9086 | AG | 1.6895 | ["INTERCHROMOSOMAL[chr9--chr14]"] | chr9:129005776-chr14:24264404 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| MIB1--VAPA | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | MIB1^ENSG00000101752.12 | chr18:21741812:+ | VAPA^ENSG00000101558.14 | chr18:9931810:+ | &rna_s1221_S42@LH00166:156:2373MLLT3:2:2162:5447:11142 | . | YES_LDAS | 10.0681 | GT | 1.4566 | AG | 1.9219 | ["INTRACHROMOSOMAL[chr18:11.74Mb]"] | chr18:21741812-chr18:9931810 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| LMNA--NTRK1 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | LMNA^ENSG00000160789.23 | chr1:156130773:+ | NTRK1^ENSG00000198400.13 | chr1:156874906:+ | &rna_s1221_S42@LH00166:156:2373MLLT3:1:2116:43014:11190 | . | YES_LDAS | 10.0681 | GT | 1.7465 | AG | 1.5058 | ["ChimerKB","ChimerPub","Cosmic","TCGA_StarF2019","INTRACHROMOSOMAL[chr1:0.68Mb]"] | chr1:156130773-chr1:156874906 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| KIF5B--RET | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | KIF5B^ENSG00000170759.11 | chr10:32017143:- | RET^ENSG00000165731.20 | chr10:43114480:+ | &rna_s1221_S42@LH00166:156:2373MLLT3:3:2268:7250:12440 | . | NO_LDAS | 10.0681 | GT | 1.9656 | AG | 1.9656 | ["ChimerKB","ChimerPub","Cosmic","ChimerSeq","INTRACHROMOSOMAL[chr10:11.02Mb]"] | chr10:32017143-chr10:43114480 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| GPKOW--NIPBL | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | GPKOW^ENSG00000068394.11 | chrX:49115891:- | NIPBL^ENSG00000164190.19 | chr5:36975922:+ | &rna_s1221_S42@LH00166:156:2373MLLT3:2:1139:37226:20259 | . | NO_LDAS | 10.0681 | GT | 1.7465 | AG | 1.7056 | ["INTERCHROMOSOMAL[chrX--chr5]"] | chrX:49115891-chr5:36975922 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| FLYWCH1--SFI1 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | FLYWCH1^ENSG00000059122.17 | chr16:2940092:+ | SFI1^ENSG00000198089.16 | chr22:31580272:+ | &rna_s1221_S42@LH00166:156:2373MLLT3:7:2114:10163:25562 | . | NO_LDAS | 10.0681 | GT | 1.9899 | AG | 1.5546 | ["INTERCHROMOSOMAL[chr16--chr22]"] | chr16:2940092-chr22:31580272 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| EGFR--SEPTIN14 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | EGFR^ENSG00000146648.19 | chr7:55200413:+ | SEPTIN14^ENSG00000154997.9 | chr7:55796092:- | &rna_s1221_S42@LH00166:156:2373MLLT3:6:1134:14462:9396 | . | NO_LDAS | 10.0681 | GT | 1.8892 | AG | 1.9899 | ["INTRACHROMOSOMAL[chr7:0.58Mb]"] | chr7:55200413-chr7:55796092 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| CPT1B--AC103760.1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | CPT1B^ENSG00000205560.13 | chr22:50571154:- | AC103760.1^ENSG00000254231.3 | chr8:86333992:- | &rna_s1221_S42@LH00166:156:2373MLLT3:8:1285:23727:2762 | . | NO_LDAS | 10.0681 | GT | 1.9086 | AG | 1.8256 | ["INTERCHROMOSOMAL[chr22--chr8]"] | chr22:50571154-chr8:86333992 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| AC009403.1--ODR4 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | AC009403.1^ENSG00000216895.9 | chr7:155643468:- | ODR4^ENSG00000157181.16 | chr1:186406083:+ | &rna_s1221_S42@LH00166:156:2373MLLT3:1:1226:18734:11414 | . | YES_LDAS | 10.0681 | GT | 1.6402 | AG | 1.7465 | ["INTERCHROMOSOMAL[chr7--chr1]"] | chr7:155643468-chr1:186406083 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 |
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