Processes

COPY_INPUT_TO_OUTDIR
1 1
RNAFUSION:CAT_FASTQ
RNAFUSION:FASTQC
1 1
TRIM_WORKFLOW:FASTP
1 1
TRIM_WORKFLOW:FASTQC_FOR_FASTP
1 1
RNAFUSION:KALLISTO_INDEX
1 1
RNAFUSION:KALLISTO_QUANT
1 1
RNAFUSION:KALLISTO_TO_TX2GENE_QC
1 1
RNAFUSION:KALLISTO_TO_MULTIQC
1 1
RNAFUSION:GTF2BED
1
ARRIBA_WORKFLOW:STAR_FOR_ARRIBA
1 1
ARRIBA_WORKFLOW:ARRIBA
1 1
ARRIBA_WORKFLOW:ARRIBA_FILTER_SAME_GENE
1
ARRIBA_WORKFLOW:SAMTOOLS_SORT_FOR_ARRIBA
1 1
ARRIBA_WORKFLOW:SAMTOOLS_VIEW_FOR_ARRIBA
1
ARRIBA_WORKFLOW:SAMTOOLS_INDEX_FOR_ARRIBA
1
STARFUSION_WORKFLOW:STAR_FOR_STARFUSION
1 1
STARFUSION_WORKFLOW:SAMTOOLS_INDEX_FOR_STARFUSION
1 1
STARFUSION_WORKFLOW:SAMTOOLS_VIEW_FOR_STARFUSION
1
STARFUSION_WORKFLOW:SAMTOOLS_INDEX_FOR_STARFUSION_CRAM
1
STARFUSION_WORKFLOW:STARFUSION
1
STARFUSION_WORKFLOW:STARFUSION_FILTER
1
FUSIONREPORT_WORKFLOW:FUSIONREPORT
1
FUSIONINSPECTOR_WORKFLOW:FUSIONINSPECTOR
1
FUSIONINSPECTOR_WORKFLOW:AGAT_CONVERTSPGFF2TSV
1
FUSIONINSPECTOR_WORKFLOW:VCF_COLLECT
1
FUSIONINSPECTOR_WORKFLOW:ARRIBA_VISUALISATION
1
RNAFUSION:CTATSPLICING_STARTOCANCERINTRONS
1
RNAFUSION:CANCER_INTRONS_TO_VCF
1
QC_WORKFLOW:GATK4_MARKDUPLICATES
1 1
QC_WORKFLOW:PICARD_COLLECTRNASEQMETRICS
1
QC_WORKFLOW:PICARD_COLLECTINSERTSIZEMETRICS
1 1
BAM_RSEQC:RSEQC_BAMSTAT
1
BAM_RSEQC:RSEQC_INNERDISTANCE
1
BAM_RSEQC:RSEQC_INFEREXPERIMENT
1
BAM_RSEQC:RSEQC_JUNCTIONANNOTATION
1
BAM_RSEQC:RSEQC_JUNCTIONSATURATION
1
BAM_RSEQC:RSEQC_READDISTRIBUTION
1
BAM_RSEQC:RSEQC_READDUPLICATION
1
QC_WORKFLOW:SEQTOOL_QC
1
QC_WORKFLOW:SEQTOOL_WHOLE_BAM_SATURATION
1
QC_WORKFLOW:SEQTOOL_TO_MULTIQC
1
QC_WORKFLOW:PRESEQ_LCEXTRAP
1 1
QC_WORKFLOW:PRESEQ_TO_MULTIQC
1
RNA_CONTAMINATION_DETECTION_WORKFLOW:NGSCheckMATE
1
RNA_CONTAMINATION_DETECTION_WORKFLOW:EXTRACT_VAF_FEATURES
1
RNA_CONTAMINATION_DETECTION_WORKFLOW:PREDICT_CONTAMINATION
1
RNAFUSION:CONTAMINATION_TO_MULTIQC
1
RNAFUSION:MULTIQC
1
RNAFUSION:MULTIQC_GENERAL_STATS_TXT_TO_JSON
1
RNAFUSION:MULTIQC_GENERAL_STATS_TXT_TO_TSV
1