.command.sh - Workdir - RECALL:DISCOVER_PRIMARY_TRUTH (truth-discovery-auto)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/4a1724cd25d1024ec69aecea1f625b/.command.sh
Size: 427 bytes
Task: RECALL:DISCOVER_PRIMARY_TRUTH (truth-discovery-auto)
Attempt

Content

#!/bin/bash -euo pipefail
discover_truth_outputs.py \
    --manifest sample_manifest.tsv \
    --truth-source auto \
    --output truth_matches.tsv \
    --audit truth_discover_audit.tsv \
     \
    --truth-roots /code/tests/data/harmonized/truth_run

cat <<-END_VERSIONS > versions.yml
"RECALL:DISCOVER_PRIMARY_TRUTH":
    python: $(python --version 2>&1 | sed 's/Python //')
    discover_truth_outputs: "1.0.0"
END_VERSIONS