apiVersion: batch/v1
kind: Job
metadata:
  name: nf-cc80bbaa963cdd5b64d797689d6f7a10-756a4
  namespace: nextflow
  labels: &id001 {nextflow.io/processName: RECALL_DISCOVER_HARMONIZED_OUTPUTS, nextflow.io/queue: Nextflow-OnDemand,
    nextflow.io/runName: smedina-main-2026-06-06t01-37-14z, nextflow.io/sessionId: uuid-725a0bc5-4e2d-40c1-8bf4-91d9e7e264a4,
    pltf/run-name: smedina-main-2026-06-06t01-37-14z, capacityType: on-demand, pltf/run-component: task,
    nextflow.io/app: nextflow, nextflow.io/taskName: RECALL_DISCOVER_HARMONIZED_OUTPUTS_test-discovery,
    pltf/run-id: 4fc3e30a, pltf/run-engine: nextflow, pltf/run-creator: smedina}
  annotations: &id002 {ad.datadoghq.com/nextflow.logs: '[{"source":"nextflow","service":"nextflow-task","log_processing_rules":[{"type":"multi_line","name":"nextflow_task_multiline","pattern":"^\\x00NEVER_MATCH"}]}]',
    ad.datadoghq.com/tags: '{"run_name":"smedina-main-2026-06-06t01-37-14z","run_id":"4fc3e30a","run_creator":"smedina","run_component":"task","task_process":"RECALL:DISCOVER_HARMONIZED_OUTPUTS","task_name":"RECALL:DISCOVER_HARMONIZED_OUTPUTS
      (test-discovery)"}', karpenter.sh/do-not-disrupt: 'true'}
  ownerReferences:
  - {apiVersion: v1, kind: Pod, name: smedina-main-2026-06-06t01-37-14z-4fc3e30a-cj2rn,
    uid: 9b689909-9fe9-4423-b8de-388150463077, controller: true, blockOwnerDeletion: true}
spec:
  backoffLimit: 0
  template:
    metadata:
      name: nf-cc80bbaa963cdd5b64d797689d6f7a10-756a4
      namespace: nextflow
      labels: *id001
      annotations: *id002
    spec:
      restartPolicy: Never
      containers:
      - name: nextflow
        image: 292967571998.dkr.ecr.us-west-2.amazonaws.com/rnafusion-performance-s3-python:1.0.0
        args: [/bin/bash, -o, pipefail, -c, 'trap "{ ret=$?; /opt/s5cmd/bin/s5cmd
            --log error cp .command.log s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/80bbaa963cdd5b64d797689d6f7a10/.command.log||true;
            exit $ret; }" EXIT; /opt/s5cmd/bin/s5cmd --log error cat s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/80bbaa963cdd5b64d797689d6f7a10/.command.run
            | bash 2>&1 | tee .command.log']
        workingDir: /tmp
        imagePullPolicy: Always
        env:
        - {name: SSL_CERT_FILE, value: /opt/s5cmd/ssl/ca-certificates.crt}
        - {name: SSL_CERT_DIR, value: /opt/s5cmd/ssl/certs}
        resources:
          requests: {cpu: 1, memory: 12288Mi, ephemeral-storage: 61440Mi}
          limits: {memory: 12288Mi, ephemeral-storage: 61440Mi}
        volumeMounts:
        - {name: vol-29, mountPath: /app}
        - {name: vol-30, mountPath: /tmp}
        - {name: vol-31, mountPath: /mnt/secrets}
        - {name: vol-32, mountPath: /opt/s5cmd}
      nodeSelector: {workload: nextflow-task, karpenter.sh/capacity-type: on-demand}
      affinity:
        nodeAffinity:
          requiredDuringSchedulingIgnoredDuringExecution:
            nodeSelectorTerms:
            - matchExpressions:
              - {key: eks.amazonaws.com/instance-gpu-count, operator: DoesNotExist}
      serviceAccountName: sa-nextflow
      securityContext: {runAsUser: 1000}
      tolerations:
      - {key: workload, operator: Equal, value: nextflow-task, effect: NoSchedule}
      activeDeadlineSeconds: 43200
      volumes:
      - name: vol-29
        emptyDir: []
      - name: vol-30
        emptyDir: []
      - name: vol-31
        secret: {secretName: aws-secrets-manager}
      - name: vol-32
        hostPath: {path: /opt/s5cmd}
  ttlSecondsAfterFinished: 28800