Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/114db0d7825e71a42fdd3c583a8645/sample_manifest.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/3e035a0ddf41fa547a7d6b73fa7887/truth_matches.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ba/67b5c69ee63f978b1ef481bef1a0db/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ba/67b5c69ee63f978b1ef481bef1a0db/.command.run
==> STAGING COMPLETE (4 inputs)

Traceback (most recent call last):
  File "/tmp/nxf.rZL5s0yfwL/nextflow-bin/io_utils.py", line 84, in read_csv
    return pd.read_csv(path, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/local/lib/python3.11/site-packages/pandas/io/parsers/readers.py", line 873, in read_csv
    return _read(filepath_or_buffer, kwds)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/local/lib/python3.11/site-packages/pandas/io/parsers/readers.py", line 300, in _read
    parser = TextFileReader(filepath_or_buffer, **kwds)
             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/local/lib/python3.11/site-packages/pandas/io/parsers/readers.py", line 1645, in __init__
    self._engine = self._make_engine(f, self.engine)
                   ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/local/lib/python3.11/site-packages/pandas/io/parsers/readers.py", line 1904, in _make_engine
    self.handles = get_handle(
                   ^^^^^^^^^^^
  File "/usr/local/lib/python3.11/site-packages/pandas/io/common.py", line 776, in get_handle
    ioargs = _get_filepath_or_buffer(
             ^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/local/lib/python3.11/site-packages/pandas/io/common.py", line 454, in _get_filepath_or_buffer
    file_obj = open_file.open()
               ^^^^^^^^^^^^^^^^
  File "/usr/local/lib/python3.11/site-packages/fsspec/core.py", line 147, in open
    return self.__enter__()
           ^^^^^^^^^^^^^^^^
  File "/usr/local/lib/python3.11/site-packages/fsspec/core.py", line 105, in __enter__
    f = self.fs.open(self.path, mode=mode)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/local/lib/python3.11/site-packages/fsspec/spec.py", line 1352, in open
    f = self._open(
        ^^^^^^^^^^^
  File "/usr/local/lib/python3.11/site-packages/s3fs/core.py", line 816, in _open
    return S3File(
           ^^^^^^^
  File "/usr/local/lib/python3.11/site-packages/s3fs/core.py", line 2556, in __init__
    super().__init__(
  File "/usr/local/lib/python3.11/site-packages/fsspec/spec.py", line 1926, in __init__
    self.size = self.details["size"]
                ^^^^^^^^^^^^
  File "/usr/local/lib/python3.11/site-packages/fsspec/spec.py", line 1939, in details
    self._details = self.fs.info(self.path)
                    ^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/local/lib/python3.11/site-packages/fsspec/asyn.py", line 118, in wrapper
    return sync(self.loop, func, *args, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/local/lib/python3.11/site-packages/fsspec/asyn.py", line 103, in sync
    raise return_result
  File "/usr/local/lib/python3.11/site-packages/fsspec/asyn.py", line 56, in _runner
    result[0] = await coro
                ^^^^^^^^^^
  File "/usr/local/lib/python3.11/site-packages/s3fs/core.py", line 1791, in _info
    raise FileNotFoundError(path)
FileNotFoundError: natera-platform-sandbox/pipeline-outputs/aih_dev/altera_exact/hmnz__cgp_rna_exp0034__2fc40342--20260601/659_bdp_T1_TRNA_1_B2372Y3LT4_1/variants/rna_fusion/659_bdp_T1_TRNA_1_B2372Y3LT4_1.rnafusions.sendout_hg38.hmnz.tsv

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/tmp/nxf.rZL5s0yfwL/nextflow-bin/aggregate_harmonized_calls.py", line 66, in <module>
    main()
  File "/tmp/nxf.rZL5s0yfwL/nextflow-bin/aggregate_harmonized_calls.py", line 45, in main
    df = read_csv(fusion_path, sep="\t", dtype=str)
         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/tmp/nxf.rZL5s0yfwL/nextflow-bin/io_utils.py", line 87, in read_csv
    subprocess.run(["aws", "s3", "cp", path, tmp.name], check=True)
  File "/usr/local/lib/python3.11/subprocess.py", line 548, in run
    with Popen(*popenargs, **kwargs) as process:
         ^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/local/lib/python3.11/subprocess.py", line 1026, in __init__
    self._execute_child(args, executable, preexec_fn, close_fds,
  File "/usr/local/lib/python3.11/subprocess.py", line 1955, in _execute_child
    raise child_exception_type(errno_num, err_msg, err_filename)
FileNotFoundError: [Errno 2] No such file or directory: 'aws'