.command.sh - Workdir - RECALL:DISCOVER_HARMONIZED_OUTPUTS (test-discovery)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/feadd70e94b096cab9541794b77e05/.command.sh
Size: 638 bytes
Task: RECALL:DISCOVER_HARMONIZED_OUTPUTS (test-discovery)
Attempt

Content

#!/bin/bash -euo pipefail
discover_harmonized_outputs.py \
    --manifest sample_manifest.tsv \
    --test-dirs s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0016/A23T55JLT4/nfcore_rnafusion__2cae617--20260515-145204/ s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_rna_exp0034/B2372Y3LT4/nfcore_rnafusion__2cae617--20260515-145204/ \
    --output discovered_outputs.tsv \
    --audit discover_audit.tsv

cat <<-END_VERSIONS > versions.yml
"RECALL:DISCOVER_HARMONIZED_OUTPUTS":
    python: $(python --version 2>&1 | sed 's/Python //')
    discover_harmonized_outputs: "1.0.0"
END_VERSIONS