Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BQKE-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BQKE-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BQKE-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BQKE-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 68031428 total, 53979 skipped (flags/unmapped)
Fragments: 34118807 total (33824520 tlen-paired, 4886 hash-paired, 4522 singletons, 9424 discordant, 275455 orphans, 9906 too large [>5000 bp], 7645424 duplicates)
Reads: 68153695 total, 59727 skipped (flags/unmapped)
Fragments: 34181222 total (33884474 tlen-paired, 5576 hash-paired, 4564 singletons, 11536 discordant, 275072 orphans, 5580 too large [>5000 bp], 7720353 duplicates)
Reads: 73706472 total, 54518 skipped (flags/unmapped)
Fragments: 36962600 total (36653548 tlen-paired, 6073 hash-paired, 4974 singletons, 8631 discordant, 289374 orphans, 10551 too large [>5000 bp], 8223070 duplicates)
Reads: 75566757 total, 79707 skipped (flags/unmapped)
Fragments: 38014989 total (37173956 tlen-paired, 3801 hash-paired, 5004 singletons, 159766 discordant, 672462 orphans, 67269 too large [>5000 bp], 8508609 duplicates)