Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BCB6-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BCB6-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BCB6-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BCB6-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 59331783 total, 57125 skipped (flags/unmapped)
Fragments: 30068393 total (29178610 tlen-paired, 4069 hash-paired, 2951 singletons, 5202 discordant, 877561 orphans, 9192 too large [>5000 bp], 8371843 duplicates)
Reads: 58767870 total, 58700 skipped (flags/unmapped)
Fragments: 29767056 total (28922793 tlen-paired, 3394 hash-paired, 3040 singletons, 5989 discordant, 831840 orphans, 4969 too large [>5000 bp], 8385466 duplicates)
Reads: 64291681 total, 58974 skipped (flags/unmapped)
Fragments: 32598392 total (31610187 tlen-paired, 2719 hash-paired, 3269 singletons, 4895 discordant, 977322 orphans, 8257 too large [>5000 bp], 8939233 duplicates)
Reads: 68746852 total, 95675 skipped (flags/unmapped)
Fragments: 35370984 total (32103807 tlen-paired, 3883 hash-paired, 3549 singletons, 663465 discordant, 2596280 orphans, 254519 too large [>5000 bp], 9413910 duplicates)