Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_GS7-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_GS7-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_GS7-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_GS7-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 78713237 total, 64740 skipped (flags/unmapped)
Fragments: 39483495 total (39135333 tlen-paired, 5179 hash-paired, 4623 singletons, 12604 discordant, 325756 orphans, 5943 too large [>5000 bp], 10021944 duplicates)
Reads: 86407836 total, 63394 skipped (flags/unmapped)
Fragments: 43342766 total (42952764 tlen-paired, 5889 hash-paired, 4844 singletons, 12073 discordant, 367196 orphans, 15475 too large [>5000 bp], 10888946 duplicates)
Reads: 84253666 total, 58012 skipped (flags/unmapped)
Fragments: 42263670 total (41900477 tlen-paired, 4109 hash-paired, 4661 singletons, 8828 discordant, 345595 orphans, 9285 too large [>5000 bp], 10563088 duplicates)
Reads: 87487828 total, 89202 skipped (flags/unmapped)
Fragments: 44041986 total (42996018 tlen-paired, 3767 hash-paired, 4919 singletons, 196123 discordant, 841159 orphans, 80366 too large [>5000 bp], 11050198 duplicates)