Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_I2R-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_I2R-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_I2R-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_I2R-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 64588320 total, 51311 skipped (flags/unmapped)
Fragments: 32414690 total (32087132 tlen-paired, 3047 hash-paired, 3965 singletons, 8790 discordant, 311756 orphans, 11675 too large [>5000 bp], 7465684 duplicates)
Reads: 64551174 total, 52967 skipped (flags/unmapped)
Fragments: 32397868 total (32076760 tlen-paired, 3138 hash-paired, 4120 singletons, 10157 discordant, 303693 orphans, 5142 too large [>5000 bp], 7543563 duplicates)
Reads: 70428268 total, 49215 skipped (flags/unmapped)
Fragments: 35347399 total (35005437 tlen-paired, 3570 hash-paired, 4348 singletons, 7487 discordant, 326557 orphans, 7580 too large [>5000 bp], 8055634 duplicates)
Reads: 72493321 total, 76719 skipped (flags/unmapped)
Fragments: 36523727 total (35540021 tlen-paired, 3105 hash-paired, 4445 singletons, 191493 discordant, 784663 orphans, 79128 too large [>5000 bp], 8365001 duplicates)