Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_1G0-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_1G0-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_1G0-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_1G0-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 73256835 total, 60448 skipped (flags/unmapped)
Fragments: 36759026 total (36411602 tlen-paired, 4294 hash-paired, 4335 singletons, 10469 discordant, 328326 orphans, 5498 too large [>5000 bp], 9029280 duplicates)
Reads: 80076740 total, 57427 skipped (flags/unmapped)
Fragments: 40181375 total (39790706 tlen-paired, 5341 hash-paired, 4589 singletons, 10243 discordant, 370496 orphans, 15824 too large [>5000 bp], 9765708 duplicates)
Reads: 78502575 total, 52616 skipped (flags/unmapped)
Fragments: 39393370 total (39029676 tlen-paired, 3013 hash-paired, 4472 singletons, 7218 discordant, 348991 orphans, 8341 too large [>5000 bp], 9529085 duplicates)
Reads: 81660179 total, 84183 skipped (flags/unmapped)
Fragments: 41142316 total (40052104 tlen-paired, 3079 hash-paired, 4677 singletons, 207559 discordant, 874897 orphans, 85469 too large [>5000 bp], 9971705 duplicates)