Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BRTT-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BRTT-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BRTT-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BRTT-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 57888843 total, 54956 skipped (flags/unmapped)
Fragments: 29071716 total (28737500 tlen-paired, 3835 hash-paired, 3603 singletons, 9524 discordant, 317254 orphans, 5656 too large [>5000 bp], 6882050 duplicates)
Reads: 62585554 total, 45984 skipped (flags/unmapped)
Fragments: 31435266 total (31080652 tlen-paired, 2408 hash-paired, 3682 singletons, 6672 discordant, 341852 orphans, 7286 too large [>5000 bp], 7289994 duplicates)
Reads: 63743891 total, 50823 skipped (flags/unmapped)
Fragments: 32011236 total (31638799 tlen-paired, 5006 hash-paired, 3712 singletons, 8987 discordant, 354732 orphans, 14520 too large [>5000 bp], 7485053 duplicates)
Reads: 64929019 total, 72177 skipped (flags/unmapped)
Fragments: 32778654 total (31699392 tlen-paired, 2825 hash-paired, 3820 singletons, 207613 discordant, 865004 orphans, 84179 too large [>5000 bp], 7605319 duplicates)