Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_H0A-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_H0A-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_H0A-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_H0A-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 55414498 total, 47786 skipped (flags/unmapped)
Fragments: 27829984 total (27516757 tlen-paired, 2708 hash-paired, 3198 singletons, 8599 discordant, 298722 orphans, 4332 too large [>5000 bp], 6575306 duplicates)
Reads: 58962659 total, 44324 skipped (flags/unmapped)
Fragments: 29613087 total (29282015 tlen-paired, 2733 hash-paired, 3336 singletons, 6320 discordant, 318683 orphans, 7090 too large [>5000 bp], 6867722 duplicates)
Reads: 60755146 total, 46719 skipped (flags/unmapped)
Fragments: 30512137 total (30158041 tlen-paired, 3773 hash-paired, 3367 singletons, 8584 discordant, 338372 orphans, 12946 too large [>5000 bp], 7116158 duplicates)
Reads: 61770240 total, 67777 skipped (flags/unmapped)
Fragments: 31180512 total (30169666 tlen-paired, 1714 hash-paired, 3588 singletons, 193589 discordant, 811955 orphans, 78491 too large [>5000 bp], 7228661 duplicates)