Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_I8V-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_I8V-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_I8V-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_I8V-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 45342698 total, 44834 skipped (flags/unmapped)
Fragments: 22950657 total (22332498 tlen-paired, 2415 hash-paired, 2721 singletons, 5370 discordant, 607653 orphans, 3462 too large [>5000 bp], 6152045 duplicates)
Reads: 48625294 total, 46206 skipped (flags/unmapped)
Fragments: 24618196 total (23941565 tlen-paired, 2466 hash-paired, 2873 singletons, 3891 discordant, 667401 orphans, 6485 too large [>5000 bp], 6407923 duplicates)
Reads: 50269836 total, 46505 skipped (flags/unmapped)
Fragments: 25449283 total (24740669 tlen-paired, 2489 hash-paired, 2939 singletons, 5714 discordant, 697472 orphans, 12588 too large [>5000 bp], 6717374 duplicates)
Reads: 52442496 total, 76216 skipped (flags/unmapped)
Fragments: 26935422 total (24592860 tlen-paired, 3249 hash-paired, 3129 singletons, 459777 discordant, 1876407 orphans, 187486 too large [>5000 bp], 6835330 duplicates)