Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_H3R-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_H3R-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_H3R-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_H3R-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 79674431 total, 63678 skipped (flags/unmapped)
Fragments: 40024301 total (39536480 tlen-paired, 3301 hash-paired, 4594 singletons, 12161 discordant, 467765 orphans, 17255 too large [>5000 bp], 10304375 duplicates)
Reads: 79200803 total, 67391 skipped (flags/unmapped)
Fragments: 39783390 total (39318943 tlen-paired, 3688 hash-paired, 4765 singletons, 13447 discordant, 442547 orphans, 6972 too large [>5000 bp], 10349947 duplicates)
Reads: 88666331 total, 96202 skipped (flags/unmapped)
Fragments: 44757000 total (43287571 tlen-paired, 3614 hash-paired, 5203 singletons, 288124 discordant, 1172488 orphans, 116910 too large [>5000 bp], 11450419 duplicates)
Reads: 85582573 total, 60316 skipped (flags/unmapped)
Fragments: 42991868 total (42497711 tlen-paired, 3864 hash-paired, 5043 singletons, 9778 discordant, 475472 orphans, 9518 too large [>5000 bp], 10976676 duplicates)