Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_4Z2-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_4Z2-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
The index file is older than the data file: 1029_4Z2-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_4Z2-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 69382992 total, 58718 skipped (flags/unmapped)
Fragments: 34847908 total (34448406 tlen-paired, 3687 hash-paired, 4401 singletons, 13687 discordant, 377727 orphans, 5293 too large [>5000 bp], 8313737 duplicates)
Reads: 69517923 total, 56529 skipped (flags/unmapped)
Fragments: 34912327 total (34507860 tlen-paired, 3469 hash-paired, 4210 singletons, 11488 discordant, 385300 orphans, 13125 too large [>5000 bp], 8244035 duplicates)
Reads: 77268373 total, 81061 skipped (flags/unmapped)
Fragments: 38983367 total (37778349 tlen-paired, 3333 hash-paired, 4604 singletons, 232007 discordant, 965074 orphans, 95128 too large [>5000 bp], 9176436 duplicates)
Reads: 75253261 total, 51745 skipped (flags/unmapped)
Fragments: 37795258 total (37376129 tlen-paired, 2948 hash-paired, 4556 singletons, 9597 discordant, 402028 orphans, 8792 too large [>5000 bp], 8852157 duplicates)