Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_BS78-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.baiThe index file is older than the data file: 1029_BS78-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1029_BS78-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BS78-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 56565738 total, 49568 skipped (flags/unmapped)
Fragments: 28373305 total (28121995 tlen-paired, 4153 hash-paired, 3595 singletons, 9159 discordant, 234403 orphans, 3779 too large [>5000 bp], 5954697 duplicates)
Reads: 63072876 total, 68165 skipped (flags/unmapped)
Fragments: 31746318 total (30999286 tlen-paired, 3444 hash-paired, 4055 singletons, 139593 discordant, 599940 orphans, 58035 too large [>5000 bp], 6583285 duplicates)
Reads: 61270526 total, 44284 skipped (flags/unmapped)
Fragments: 30731869 total (30469161 tlen-paired, 4214 hash-paired, 3880 singletons, 6244 discordant, 248370 orphans, 7377 too large [>5000 bp], 6347795 duplicates)
Reads: 62316377 total, 49358 skipped (flags/unmapped)
Fragments: 31257002 total (30975441 tlen-paired, 3316 hash-paired, 3964 singletons, 9056 discordant, 265225 orphans, 11102 too large [>5000 bp], 6489623 duplicates)