Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BN9Y-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BN9Y-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BN9Y-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BN9Y-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 77318765 total, 62138 skipped (flags/unmapped)
Fragments: 38779637 total (38423336 tlen-paired, 5736 hash-paired, 4223 singletons, 10916 discordant, 335426 orphans, 18501 too large [>5000 bp], 9674880 duplicates)
Reads: 77285956 total, 65140 skipped (flags/unmapped)
Fragments: 38766662 total (38424491 tlen-paired, 5211 hash-paired, 4238 singletons, 12782 discordant, 319940 orphans, 5835 too large [>5000 bp], 9785227 duplicates)
Reads: 83965750 total, 59953 skipped (flags/unmapped)
Fragments: 42115407 total (41756789 tlen-paired, 5192 hash-paired, 4393 singletons, 9311 discordant, 339722 orphans, 9549 too large [>5000 bp], 10398094 duplicates)
Reads: 85921285 total, 94911 skipped (flags/unmapped)
Fragments: 43233245 total (42240833 tlen-paired, 4948 hash-paired, 4612 singletons, 189464 discordant, 793388 orphans, 78942 too large [>5000 bp], 10781160 duplicates)