Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_5IX-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.baiThe index file is older than the data file: 1029_5IX-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1029_5IX-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_5IX-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 56622704 total, 50226 skipped (flags/unmapped)
Fragments: 28394242 total (28156962 tlen-paired, 4106 hash-paired, 3292 singletons, 9350 discordant, 220532 orphans, 3909 too large [>5000 bp], 6660369 duplicates)
Reads: 56863839 total, 47827 skipped (flags/unmapped)
Fragments: 28513415 total (28264614 tlen-paired, 4755 hash-paired, 3375 singletons, 7872 discordant, 232799 orphans, 12678 too large [>5000 bp], 6616281 duplicates)
Reads: 61737680 total, 45446 skipped (flags/unmapped)
Fragments: 30958111 total (30706947 tlen-paired, 4514 hash-paired, 3466 singletons, 6760 discordant, 236424 orphans, 7951 too large [>5000 bp], 7145953 duplicates)
Reads: 63133857 total, 68245 skipped (flags/unmapped)
Fragments: 31753261 total (31073650 tlen-paired, 2680 hash-paired, 3662 singletons, 129557 discordant, 543712 orphans, 53232 too large [>5000 bp], 7346874 duplicates)