Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_3OH-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_3OH-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_3OH-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_3OH-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 57531648 total, 44492 skipped (flags/unmapped)
Fragments: 28876008 total (28577100 tlen-paired, 3512 hash-paired, 2874 singletons, 6914 discordant, 285608 orphans, 11811 too large [>5000 bp], 6236851 duplicates)
Reads: 57370535 total, 49013 skipped (flags/unmapped)
Fragments: 28792188 total (28510191 tlen-paired, 2596 hash-paired, 2996 singletons, 8165 discordant, 268240 orphans, 4191 too large [>5000 bp], 6283894 duplicates)
Reads: 63869628 total, 70920 skipped (flags/unmapped)
Fragments: 32185615 total (31293845 tlen-paired, 2816 hash-paired, 3301 singletons, 173186 discordant, 712467 orphans, 71623 too large [>5000 bp], 6922912 duplicates)
Reads: 62393659 total, 43545 skipped (flags/unmapped)
Fragments: 31314917 total (31013045 tlen-paired, 2710 hash-paired, 3125 singletons, 5832 discordant, 290205 orphans, 6805 too large [>5000 bp], 6706094 duplicates)