Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_GGQ-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_GGQ-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] Count mode: frac
The index file is older than the data file: 1029_GGQ-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_GGQ-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 70023914 total, 57814 skipped (flags/unmapped)
Fragments: 35113707 total (34826357 tlen-paired, 4983 hash-paired, 3882 singletons, 10989 discordant, 267496 orphans, 5032 too large [>5000 bp], 8225513 duplicates)
Reads: 77846815 total, 79957 skipped (flags/unmapped)
Fragments: 39159865 total (38314922 tlen-paired, 4458 hash-paired, 4380 singletons, 158037 discordant, 678068 orphans, 64788 too large [>5000 bp], 9071375 duplicates)
Reads: 76721879 total, 56410 skipped (flags/unmapped)
Fragments: 38469815 total (38156246 tlen-paired, 5194 hash-paired, 4317 singletons, 10260 discordant, 293798 orphans, 11977 too large [>5000 bp], 8927551 duplicates)
Reads: 75491807 total, 50925 skipped (flags/unmapped)
Fragments: 37857735 total (37557523 tlen-paired, 4466 hash-paired, 4265 singletons, 7688 discordant, 283793 orphans, 6735 too large [>5000 bp], 8714962 duplicates)