Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_BLU1-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
The index file is older than the data file: 1029_BLU1-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BLU1-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BLU1-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 63574103 total, 55470 skipped (flags/unmapped)
Fragments: 31880491 total (31614792 tlen-paired, 4887 hash-paired, 3537 singletons, 9795 discordant, 247480 orphans, 4334 too large [>5000 bp], 7408039 duplicates)
Reads: 68653241 total, 48016 skipped (flags/unmapped)
Fragments: 34429950 total (34148913 tlen-paired, 4370 hash-paired, 3790 singletons, 6978 discordant, 265899 orphans, 7507 too large [>5000 bp], 7897010 duplicates)
Reads: 70402166 total, 78692 skipped (flags/unmapped)
Fragments: 35421038 total (34623541 tlen-paired, 4211 hash-paired, 4021 singletons, 148738 discordant, 640527 orphans, 62973 too large [>5000 bp], 8167313 duplicates)
Reads: 70171835 total, 54045 skipped (flags/unmapped)
Fragments: 35188922 total (34895844 tlen-paired, 4377 hash-paired, 3810 singletons, 9325 discordant, 275566 orphans, 9661 too large [>5000 bp], 8121371 duplicates)