Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BQD7-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BQD7-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BQD7-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BQD7-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 75404906 total, 60365 skipped (flags/unmapped)
Fragments: 37812194 total (37486474 tlen-paired, 6231 hash-paired, 4270 singletons, 10264 discordant, 304955 orphans, 14689 too large [>5000 bp], 9037679 duplicates)
Reads: 75324558 total, 63732 skipped (flags/unmapped)
Fragments: 37775199 total (37457919 tlen-paired, 5102 hash-paired, 4196 singletons, 12114 discordant, 295868 orphans, 5246 too large [>5000 bp], 9127851 duplicates)
Reads: 81385757 total, 58236 skipped (flags/unmapped)
Fragments: 40812793 total (40481339 tlen-paired, 4993 hash-paired, 4495 singletons, 8890 discordant, 313076 orphans, 9753 too large [>5000 bp], 9696121 duplicates)
Reads: 83563884 total, 91143 skipped (flags/unmapped)
Fragments: 42029208 total (41114315 tlen-paired, 5280 hash-paired, 4695 singletons, 175118 discordant, 729800 orphans, 74410 too large [>5000 bp], 10049250 duplicates)