Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_05O-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_05O-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_05O-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_05O-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 66128969 total, 55188 skipped (flags/unmapped)
Fragments: 33183230 total (32866694 tlen-paired, 3309 hash-paired, 3428 singletons, 10462 discordant, 299337 orphans, 5043 too large [>5000 bp], 8012443 duplicates)
Reads: 70889685 total, 53006 skipped (flags/unmapped)
Fragments: 35569264 total (35238132 tlen-paired, 4226 hash-paired, 3570 singletons, 7561 discordant, 315775 orphans, 8748 too large [>5000 bp], 8435832 duplicates)
Reads: 72914492 total, 53804 skipped (flags/unmapped)
Fragments: 36584701 total (36232972 tlen-paired, 3527 hash-paired, 3576 singletons, 10174 discordant, 334452 orphans, 14657 too large [>5000 bp], 8737318 duplicates)
Reads: 73594545 total, 76641 skipped (flags/unmapped)
Fragments: 37076875 total (36100586 tlen-paired, 3478 hash-paired, 3637 singletons, 184083 discordant, 785091 orphans, 76441 too large [>5000 bp], 8837027 duplicates)