Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_BSOQ-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
The index file is older than the data file: 1029_BSOQ-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BSOQ-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BSOQ-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 59640301 total, 51220 skipped (flags/unmapped)
Fragments: 29937762 total (29629516 tlen-paired, 2936 hash-paired, 3469 singletons, 9423 discordant, 292418 orphans, 4722 too large [>5000 bp], 7261331 duplicates)
Reads: 64646758 total, 48901 skipped (flags/unmapped)
Fragments: 32451693 total (32120783 tlen-paired, 3145 hash-paired, 3803 singletons, 6490 discordant, 317472 orphans, 7873 too large [>5000 bp], 7696184 duplicates)
Reads: 65786714 total, 51874 skipped (flags/unmapped)
Fragments: 33021708 total (32681873 tlen-paired, 3794 hash-paired, 3768 singletons, 9275 discordant, 322998 orphans, 9095 too large [>5000 bp], 7920485 duplicates)
Reads: 66653143 total, 75116 skipped (flags/unmapped)
Fragments: 33611098 total (32623502 tlen-paired, 2633 hash-paired, 3809 singletons, 188128 discordant, 793026 orphans, 76333 too large [>5000 bp], 8019442 duplicates)