Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_EDH-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.baiThe index file is older than the data file: 1029_EDH-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1029_EDH-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_EDH-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 61735550 total, 52401 skipped (flags/unmapped)
Fragments: 30985413 total (30677252 tlen-paired, 2652 hash-paired, 3636 singletons, 9332 discordant, 292541 orphans, 4250 too large [>5000 bp], 7511324 duplicates)
Reads: 67723339 total, 55085 skipped (flags/unmapped)
Fragments: 33990002 total (33637792 tlen-paired, 5726 hash-paired, 3763 singletons, 8996 discordant, 333725 orphans, 12869 too large [>5000 bp], 8150763 duplicates)
Reads: 66310900 total, 46947 skipped (flags/unmapped)
Fragments: 33284318 total (32957611 tlen-paired, 2530 hash-paired, 3750 singletons, 6294 discordant, 314133 orphans, 6600 too large [>5000 bp], 7906721 duplicates)
Reads: 68989918 total, 76562 skipped (flags/unmapped)
Fragments: 34776881 total (33787578 tlen-paired, 2824 hash-paired, 4003 singletons, 189295 discordant, 793181 orphans, 78389 too large [>5000 bp], 8306000 duplicates)