Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_0DT-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_0DT-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_0DT-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_0DT-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 59096487 total, 51438 skipped (flags/unmapped)
Fragments: 29650770 total (29371455 tlen-paired, 4435 hash-paired, 3363 singletons, 9405 discordant, 262112 orphans, 4492 too large [>5000 bp], 6743254 duplicates)
Reads: 63811523 total, 47851 skipped (flags/unmapped)
Fragments: 32013197 total (31720868 tlen-paired, 5245 hash-paired, 3547 singletons, 6666 discordant, 276871 orphans, 8848 too large [>5000 bp], 7171591 duplicates)
Reads: 65284628 total, 49892 skipped (flags/unmapped)
Fragments: 32754561 total (32446183 tlen-paired, 3729 hash-paired, 3620 singletons, 9493 discordant, 291536 orphans, 10385 too large [>5000 bp], 7395088 duplicates)
Reads: 65717563 total, 72497 skipped (flags/unmapped)
Fragments: 33099109 total (32250486 tlen-paired, 3395 hash-paired, 3704 singletons, 159610 discordant, 681914 orphans, 66233 too large [>5000 bp], 7455354 duplicates)