Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_HT5-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_HT5-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_HT5-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_HT5-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 62933849 total, 54372 skipped (flags/unmapped)
Fragments: 31573144 total (31283330 tlen-paired, 3447 hash-paired, 3424 singletons, 9392 discordant, 273551 orphans, 5082 too large [>5000 bp], 7970467 duplicates)
Reads: 67247461 total, 47890 skipped (flags/unmapped)
Fragments: 33739562 total (33436400 tlen-paired, 2508 hash-paired, 3420 singletons, 6395 discordant, 290839 orphans, 7353 too large [>5000 bp], 8349454 duplicates)
Reads: 69173248 total, 54218 skipped (flags/unmapped)
Fragments: 34702194 total (34372527 tlen-paired, 3421 hash-paired, 3662 singletons, 9474 discordant, 313110 orphans, 15707 too large [>5000 bp], 8636451 duplicates)
Reads: 69815927 total, 76715 skipped (flags/unmapped)
Fragments: 35160259 total (34265654 tlen-paired, 2885 hash-paired, 3722 singletons, 168970 discordant, 719028 orphans, 70722 too large [>5000 bp], 8744824 duplicates)