Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_I2U-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
The index file is older than the data file: 1029_I2U-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_I2U-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
The index file is older than the data file: 1029_I2U-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 54176690 total, 46992 skipped (flags/unmapped)
Fragments: 27206519 total (26887679 tlen-paired, 6912 hash-paired, 3129 singletons, 7134 discordant, 301665 orphans, 10727 too large [>5000 bp], 6349958 duplicates)
Reads: 54059561 total, 48233 skipped (flags/unmapped)
Fragments: 27148204 total (26841888 tlen-paired, 2902 hash-paired, 3321 singletons, 8964 discordant, 291129 orphans, 4685 too large [>5000 bp], 6419675 duplicates)
Reads: 58412969 total, 44589 skipped (flags/unmapped)
Fragments: 29335554 total (29008769 tlen-paired, 2537 hash-paired, 3342 singletons, 6384 discordant, 314522 orphans, 7568 too large [>5000 bp], 6767634 duplicates)
Reads: 60567162 total, 68641 skipped (flags/unmapped)
Fragments: 30560192 total (29591440 tlen-paired, 3096 hash-paired, 3571 singletons, 189963 discordant, 772122 orphans, 76915 too large [>5000 bp], 7078867 duplicates)