Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BJH0-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BJH0-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BJH0-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BJH0-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 73445462 total, 60909 skipped (flags/unmapped)
Fragments: 36850598 total (36504854 tlen-paired, 4630 hash-paired, 4526 singletons, 12753 discordant, 323835 orphans, 5859 too large [>5000 bp], 8951996 duplicates)
Reads: 73223704 total, 56421 skipped (flags/unmapped)
Fragments: 36737337 total (36389792 tlen-paired, 3885 hash-paired, 4255 singletons, 10149 discordant, 329256 orphans, 13060 too large [>5000 bp], 8837851 duplicates)
Reads: 79604804 total, 53868 skipped (flags/unmapped)
Fragments: 39939391 total (39579644 tlen-paired, 4312 hash-paired, 4732 singletons, 9435 discordant, 341268 orphans, 9077 too large [>5000 bp], 9513454 duplicates)
Reads: 81919868 total, 84519 skipped (flags/unmapped)
Fragments: 41241888 total (40234374 tlen-paired, 3344 hash-paired, 4854 singletons, 194709 discordant, 804607 orphans, 80517 too large [>5000 bp], 9898403 duplicates)