Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BQXQ-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BQXQ-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BQXQ-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BQXQ-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 59957578 total, 47359 skipped (flags/unmapped)
Fragments: 30103095 total (29771353 tlen-paired, 3600 hash-paired, 3305 singletons, 8143 discordant, 316694 orphans, 12014 too large [>5000 bp], 7236435 duplicates)
Reads: 65039205 total, 44394 skipped (flags/unmapped)
Fragments: 32657903 total (32312011 tlen-paired, 2200 hash-paired, 3490 singletons, 7401 discordant, 332801 orphans, 7648 too large [>5000 bp], 7754998 duplicates)
Reads: 59653213 total, 49643 skipped (flags/unmapped)
Fragments: 29952307 total (29629498 tlen-paired, 2797 hash-paired, 3473 singletons, 9842 discordant, 306697 orphans, 4563 too large [>5000 bp], 7293797 duplicates)
Reads: 66723238 total, 68974 skipped (flags/unmapped)
Fragments: 33650925 total (32642994 tlen-paired, 2635 hash-paired, 3688 singletons, 196292 discordant, 805316 orphans, 80709 too large [>5000 bp], 8055748 duplicates)