Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_GZP-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
The index file is older than the data file: 1029_GZP-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_GZP-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_GZP-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 47389911 total, 38277 skipped (flags/unmapped)
Fragments: 23795532 total (23539860 tlen-paired, 1902 hash-paired, 2963 singletons, 7100 discordant, 243707 orphans, 3620 too large [>5000 bp], 5575788 duplicates)
Reads: 47413455 total, 37206 skipped (flags/unmapped)
Fragments: 23805161 total (23539265 tlen-paired, 2051 hash-paired, 2785 singletons, 5990 discordant, 255070 orphans, 11891 too large [>5000 bp], 5495013 duplicates)
Reads: 51467803 total, 36221 skipped (flags/unmapped)
Fragments: 25842537 total (25568303 tlen-paired, 2472 hash-paired, 3016 singletons, 5170 discordant, 263576 orphans, 6550 too large [>5000 bp], 5878101 duplicates)
Reads: 52956597 total, 54013 skipped (flags/unmapped)
Fragments: 26712573 total (25899229 tlen-paired, 1985 hash-paired, 3196 singletons, 158775 discordant, 649388 orphans, 65011 too large [>5000 bp], 6144798 duplicates)