Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_EM-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_EM-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_EM-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_EM-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 59085731 total, 42764 skipped (flags/unmapped)
Fragments: 29643075 total (29376304 tlen-paired, 2804 hash-paired, 3154 singletons, 5692 discordant, 255121 orphans, 7546 too large [>5000 bp], 6641667 duplicates)
Reads: 55029677 total, 48230 skipped (flags/unmapped)
Fragments: 27607789 total (27354653 tlen-paired, 3379 hash-paired, 3087 singletons, 8012 discordant, 238658 orphans, 3807 too large [>5000 bp], 6291952 duplicates)
Reads: 60672217 total, 46520 skipped (flags/unmapped)
Fragments: 30437799 total (30148483 tlen-paired, 4388 hash-paired, 3333 singletons, 7957 discordant, 273638 orphans, 13535 too large [>5000 bp], 6860101 duplicates)
Reads: 61520555 total, 66923 skipped (flags/unmapped)
Fragments: 30983352 total (30191888 tlen-paired, 2652 hash-paired, 3383 singletons, 150340 discordant, 635089 orphans, 62700 too large [>5000 bp], 6962723 duplicates)