Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BBOC-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BBOC-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BBOC-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BBOC-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 67842621 total, 61656 skipped (flags/unmapped)
Fragments: 34009511 total (33741834 tlen-paired, 8231 hash-paired, 4177 singletons, 11327 discordant, 243942 orphans, 5031 too large [>5000 bp], 7860247 duplicates)
Reads: 72969460 total, 52541 skipped (flags/unmapped)
Fragments: 36580873 total (36304038 tlen-paired, 8119 hash-paired, 4290 singletons, 7869 discordant, 256557 orphans, 8010 too large [>5000 bp], 8382916 duplicates)
Reads: 74603368 total, 58548 skipped (flags/unmapped)
Fragments: 37396026 total (37094812 tlen-paired, 10238 hash-paired, 4449 singletons, 11022 discordant, 275505 orphans, 16361 too large [>5000 bp], 8600072 duplicates)
Reads: 74973311 total, 87425 skipped (flags/unmapped)
Fragments: 37682912 total (36944249 tlen-paired, 7324 hash-paired, 4539 singletons, 134947 discordant, 591853 orphans, 58227 too large [>5000 bp], 8683106 duplicates)