Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_DOC-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_DOC-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.baiThe index file is older than the data file: 1029_DOC-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1029_DOC-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 53403004 total, 54585 skipped (flags/unmapped)
Fragments: 27036651 total (26293934 tlen-paired, 2835 hash-paired, 3067 singletons, 6417 discordant, 730398 orphans, 4291 too large [>5000 bp], 7402865 duplicates)
Reads: 57353768 total, 52627 skipped (flags/unmapped)
Fragments: 29049449 total (28227832 tlen-paired, 2856 hash-paired, 3167 singletons, 4656 discordant, 810938 orphans, 8174 too large [>5000 bp], 7719027 duplicates)
Reads: 58786777 total, 55505 skipped (flags/unmapped)
Fragments: 29769944 total (28919628 tlen-paired, 4232 hash-paired, 3171 singletons, 6290 discordant, 836623 orphans, 15589 too large [>5000 bp], 8039735 duplicates)
Reads: 62161984 total, 85079 skipped (flags/unmapped)
Fragments: 31951411 total (29114893 tlen-paired, 1988 hash-paired, 3459 singletons, 560983 discordant, 2270088 orphans, 223815 too large [>5000 bp], 8274939 duplicates)