Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BOSD-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BOSD-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BOSD-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BOSD-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 64719973 total, 55667 skipped (flags/unmapped)
Fragments: 32477674 total (32162313 tlen-paired, 3936 hash-paired, 3991 singletons, 11231 discordant, 296203 orphans, 4576 too large [>5000 bp], 7767254 duplicates)
Reads: 64851336 total, 51385 skipped (flags/unmapped)
Fragments: 32542507 total (32223122 tlen-paired, 4611 hash-paired, 4008 singletons, 9663 discordant, 301103 orphans, 10024 too large [>5000 bp], 7703881 duplicates)
Reads: 69846065 total, 50440 skipped (flags/unmapped)
Fragments: 35047243 total (34719550 tlen-paired, 3137 hash-paired, 4277 singletons, 7961 discordant, 312318 orphans, 8867 too large [>5000 bp], 8239138 duplicates)
Reads: 71795911 total, 79859 skipped (flags/unmapped)
Fragments: 36157931 total (35228586 tlen-paired, 3723 hash-paired, 4507 singletons, 178632 discordant, 742483 orphans, 73590 too large [>5000 bp], 8543827 duplicates)