Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_GW0-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_GW0-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.baiThe index file is older than the data file: 1029_GW0-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1029_GW0-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 47480743 total, 45717 skipped (flags/unmapped)
Fragments: 24031864 total (23376013 tlen-paired, 3360 hash-paired, 2441 singletons, 4331 discordant, 645719 orphans, 9729 too large [>5000 bp], 6340887 duplicates)
Reads: 47059375 total, 46596 skipped (flags/unmapped)
Fragments: 23816124 total (23180870 tlen-paired, 2926 hash-paired, 2629 singletons, 5061 discordant, 624638 orphans, 3899 too large [>5000 bp], 6380430 duplicates)
Reads: 51302777 total, 46385 skipped (flags/unmapped)
Fragments: 25973236 total (25264037 tlen-paired, 2461 hash-paired, 2655 singletons, 3944 discordant, 700139 orphans, 6357 too large [>5000 bp], 6731657 duplicates)
Reads: 54772716 total, 71605 skipped (flags/unmapped)
Fragments: 28106013 total (25717356 tlen-paired, 3123 hash-paired, 2838 singletons, 485337 discordant, 1897359 orphans, 194641 too large [>5000 bp], 7119957 duplicates)