Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_032-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_032-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_032-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_032-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 71181096 total, 48660 skipped (flags/unmapped)
Fragments: 35731088 total (35373179 tlen-paired, 3646 hash-paired, 3752 singletons, 7797 discordant, 342714 orphans, 8363 too large [>5000 bp], 8302224 duplicates)
Reads: 66503874 total, 54202 skipped (flags/unmapped)
Fragments: 33383784 total (33041350 tlen-paired, 3774 hash-paired, 3671 singletons, 11068 discordant, 323921 orphans, 4848 too large [>5000 bp], 7864926 duplicates)
Reads: 73954024 total, 78086 skipped (flags/unmapped)
Fragments: 37284077 total (36219130 tlen-paired, 3174 hash-paired, 3827 singletons, 201231 discordant, 856715 orphans, 84163 too large [>5000 bp], 8673284 duplicates)
Reads: 73210149 total, 54692 skipped (flags/unmapped)
Fragments: 36746295 total (36358674 tlen-paired, 4674 hash-paired, 3929 singletons, 10674 discordant, 368344 orphans, 17570 too large [>5000 bp], 8584158 duplicates)