Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BA0-N2-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BA0-N2-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BA0-N2-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BA0-N2-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 59758683 total, 52251 skipped (flags/unmapped)
Fragments: 29995415 total (29688803 tlen-paired, 3370 hash-paired, 3238 singletons, 10160 discordant, 289844 orphans, 4342 too large [>5000 bp], 6892359 duplicates)
Reads: 66436453 total, 72571 skipped (flags/unmapped)
Fragments: 33493033 total (32541575 tlen-paired, 2473 hash-paired, 3798 singletons, 179271 discordant, 765916 orphans, 73765 too large [>5000 bp], 7585298 duplicates)
Reads: 65839968 total, 50649 skipped (flags/unmapped)
Fragments: 33046588 total (32708857 tlen-paired, 3857 hash-paired, 3645 singletons, 9719 discordant, 320510 orphans, 10149 too large [>5000 bp], 7507105 duplicates)
Reads: 64064224 total, 47456 skipped (flags/unmapped)
Fragments: 32157070 total (31833653 tlen-paired, 2972 hash-paired, 3591 singletons, 6899 discordant, 309955 orphans, 8087 too large [>5000 bp], 7253196 duplicates)